data_3KQI # _model_server_result.job_id 6NrmcvKbOdFSoGtEULZVfw _model_server_result.datetime_utc '2024-12-27 03:31:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kqi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":75}' # _entry.id 3KQI # _exptl.entry_id 3KQI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KQI _cell.length_a 77.757 _cell.length_b 77.758 _cell.length_c 72.116 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KQI _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.499994 0.866022 0 0.866037 -0.499994 0 0 0 -1 -38.879 67.340403 -12.019333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C THR 3 B THR 3 1_555 B N M3L 4 B M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 B C M3L 4 B M3L 4 1_555 B N GLN 5 B GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A SG CYS 13 A CYS 8 1_555 D ZN ZN . A ZN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc2 A SG CYS 15 A CYS 10 1_555 D ZN ZN . A ZN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc3 A SG CYS 28 A CYS 23 1_555 C ZN ZN . A ZN 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc4 A SG CYS 31 A CYS 26 1_555 C ZN ZN . A ZN 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc5 A ND1 HIS 36 A HIS 31 1_555 D ZN ZN . A ZN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc6 A SG CYS 39 A CYS 34 1_555 D ZN ZN . A ZN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc7 A SG CYS 55 A CYS 50 1_555 C ZN ZN . A ZN 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc8 A SG CYS 58 A CYS 53 1_555 C ZN ZN . A ZN 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3KQI _atom_sites.fract_transf_matrix[1][1] 0.012861 _atom_sites.fract_transf_matrix[1][2] 0.007425 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01485 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013867 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 71 1 ZN ZN . D 3 ZN A 1 72 2 ZN ZN . E 4 GOL A 1 968 968 GOL GOL . F 5 CL A 1 73 1 CL CL . G 6 MG A 1 74 1 MG MG . H 6 MG A 1 75 1 MG MG . I 7 HOH A 1 76 76 HOH HOH . I 7 HOH A 2 77 77 HOH HOH . I 7 HOH A 3 78 78 HOH HOH . I 7 HOH A 4 79 1 HOH HOH . I 7 HOH A 5 80 2 HOH HOH . I 7 HOH A 6 81 3 HOH HOH . I 7 HOH A 7 82 82 HOH HOH . I 7 HOH A 8 83 83 HOH HOH . I 7 HOH A 9 84 4 HOH HOH . I 7 HOH A 10 85 5 HOH HOH . I 7 HOH A 11 86 6 HOH HOH . I 7 HOH A 12 87 87 HOH HOH . I 7 HOH A 13 88 88 HOH HOH . I 7 HOH A 14 89 7 HOH HOH . I 7 HOH A 15 90 90 HOH HOH . I 7 HOH A 16 91 91 HOH HOH . I 7 HOH A 17 92 92 HOH HOH . I 7 HOH A 18 93 93 HOH HOH . I 7 HOH A 19 94 8 HOH HOH . I 7 HOH A 20 95 95 HOH HOH . I 7 HOH A 21 96 9 HOH HOH . I 7 HOH A 22 97 97 HOH HOH . I 7 HOH A 23 98 98 HOH HOH . I 7 HOH A 24 99 99 HOH HOH . I 7 HOH A 25 100 100 HOH HOH . I 7 HOH A 26 101 10 HOH HOH . I 7 HOH A 27 102 102 HOH HOH . I 7 HOH A 28 103 103 HOH HOH . I 7 HOH A 29 104 104 HOH HOH . I 7 HOH A 30 105 105 HOH HOH . I 7 HOH A 31 106 106 HOH HOH . I 7 HOH A 32 107 107 HOH HOH . I 7 HOH A 33 108 11 HOH HOH . I 7 HOH A 34 109 12 HOH HOH . I 7 HOH A 35 110 110 HOH HOH . I 7 HOH A 36 111 111 HOH HOH . I 7 HOH A 37 112 112 HOH HOH . I 7 HOH A 38 113 13 HOH HOH . I 7 HOH A 39 114 14 HOH HOH . I 7 HOH A 40 115 115 HOH HOH . I 7 HOH A 41 116 116 HOH HOH . I 7 HOH A 42 117 15 HOH HOH . I 7 HOH A 43 118 118 HOH HOH . I 7 HOH A 44 119 16 HOH HOH . I 7 HOH A 45 120 17 HOH HOH . I 7 HOH A 46 121 121 HOH HOH . I 7 HOH A 47 122 18 HOH HOH . I 7 HOH A 48 123 19 HOH HOH . I 7 HOH A 49 124 20 HOH HOH . I 7 HOH A 50 125 21 HOH HOH . I 7 HOH A 51 126 24 HOH HOH . I 7 HOH A 52 127 25 HOH HOH . I 7 HOH A 53 128 128 HOH HOH . I 7 HOH A 54 129 129 HOH HOH . I 7 HOH A 55 130 26 HOH HOH . I 7 HOH A 56 131 131 HOH HOH . I 7 HOH A 57 132 132 HOH HOH . I 7 HOH A 58 133 27 HOH HOH . I 7 HOH A 59 134 28 HOH HOH . I 7 HOH A 60 135 29 HOH HOH . I 7 HOH A 61 136 136 HOH HOH . I 7 HOH A 62 137 30 HOH HOH . I 7 HOH A 63 138 138 HOH HOH . I 7 HOH A 64 139 139 HOH HOH . I 7 HOH A 65 140 31 HOH HOH . I 7 HOH A 66 141 141 HOH HOH . I 7 HOH A 67 142 32 HOH HOH . I 7 HOH A 68 143 143 HOH HOH . I 7 HOH A 69 144 144 HOH HOH . I 7 HOH A 70 145 33 HOH HOH . I 7 HOH A 71 146 35 HOH HOH . I 7 HOH A 72 147 39 HOH HOH . I 7 HOH A 73 148 40 HOH HOH . I 7 HOH A 74 149 149 HOH HOH . I 7 HOH A 75 150 41 HOH HOH . I 7 HOH A 76 151 42 HOH HOH . I 7 HOH A 77 152 43 HOH HOH . I 7 HOH A 78 153 44 HOH HOH . I 7 HOH A 79 154 154 HOH HOH . I 7 HOH A 80 155 45 HOH HOH . I 7 HOH A 81 156 46 HOH HOH . I 7 HOH A 82 157 47 HOH HOH . I 7 HOH A 83 158 158 HOH HOH . I 7 HOH A 84 159 50 HOH HOH . I 7 HOH A 85 160 51 HOH HOH . I 7 HOH A 86 161 52 HOH HOH . I 7 HOH A 87 162 53 HOH HOH . I 7 HOH A 88 163 54 HOH HOH . I 7 HOH A 89 164 55 HOH HOH . I 7 HOH A 90 165 165 HOH HOH . I 7 HOH A 91 166 56 HOH HOH . I 7 HOH A 92 167 167 HOH HOH . I 7 HOH A 93 168 168 HOH HOH . I 7 HOH A 94 169 58 HOH HOH . I 7 HOH A 95 170 59 HOH HOH . I 7 HOH A 96 171 60 HOH HOH . I 7 HOH A 97 172 61 HOH HOH . I 7 HOH A 98 173 62 HOH HOH . I 7 HOH A 99 174 63 HOH HOH . I 7 HOH A 100 175 64 HOH HOH . I 7 HOH A 101 176 65 HOH HOH . I 7 HOH A 102 177 66 HOH HOH . I 7 HOH A 103 178 68 HOH HOH . I 7 HOH A 104 179 69 HOH HOH . I 7 HOH A 105 180 70 HOH HOH . I 7 HOH A 106 181 72 HOH HOH . I 7 HOH A 107 182 75 HOH HOH . J 7 HOH B 1 22 22 HOH HOH . J 7 HOH B 2 23 23 HOH HOH . J 7 HOH B 3 34 34 HOH HOH . J 7 HOH B 4 36 36 HOH HOH . J 7 HOH B 5 37 37 HOH HOH . J 7 HOH B 6 49 49 HOH HOH . J 7 HOH B 7 67 67 HOH HOH . J 7 HOH B 8 71 71 HOH HOH . J 7 HOH B 9 73 73 HOH HOH . J 7 HOH B 10 84 84 HOH HOH . J 7 HOH B 11 96 96 HOH HOH . J 7 HOH B 12 109 109 HOH HOH . J 7 HOH B 13 113 113 HOH HOH . J 7 HOH B 14 124 124 HOH HOH . J 7 HOH B 15 133 133 HOH HOH . J 7 HOH B 16 160 160 HOH HOH . J 7 HOH B 17 164 164 HOH HOH . J 7 HOH B 18 171 171 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 6 _atom_site.Cartn_x -16.661 _atom_site.Cartn_y 45.004 _atom_site.Cartn_z -17.319 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 75 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #