data_3KQQ # _model_server_result.job_id '_ulm_bLlIm4hHn2ygEecxw' _model_server_result.datetime_utc '2024-11-06 15:32:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kqq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2001}' # _entry.id 3KQQ # _exptl.entry_id 3KQQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KQQ _cell.length_a 93.992 _cell.length_b 93.992 _cell.length_c 188.858 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KQQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 48 1_555 B SG CYS 139 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 B SG CYS 48 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 292 n n N HN1 SAH sing 293 n n N HN2 SAH sing 294 n n CA CB SAH sing 295 n n CA C SAH sing 296 n n CA HA SAH sing 297 n n CB CG SAH sing 298 n n CB HB1 SAH sing 299 n n CB HB2 SAH sing 300 n n CG SD SAH sing 301 n n CG HG1 SAH sing 302 n n CG HG2 SAH sing 303 n n SD C5' SAH sing 304 n n C O SAH doub 305 n n C OXT SAH sing 306 n n OXT HXT SAH sing 307 n n C5' C4' SAH sing 308 n n C5' "H5'1" SAH sing 309 n n C5' "H5'2" SAH sing 310 n n C4' O4' SAH sing 311 n n C4' C3' SAH sing 312 n n C4' H4' SAH sing 313 n n O4' C1' SAH sing 314 n n C3' O3' SAH sing 315 n n C3' C2' SAH sing 316 n n C3' H3' SAH sing 317 n n O3' HO3' SAH sing 318 n n C2' O2' SAH sing 319 n n C2' C1' SAH sing 320 n n C2' H2' SAH sing 321 n n O2' HO2' SAH sing 322 n n C1' N9 SAH sing 323 n n C1' H1' SAH sing 324 n n N9 C8 SAH sing 325 n y N9 C4 SAH sing 326 n y C8 N7 SAH doub 327 n y C8 H8 SAH sing 328 n n N7 C5 SAH sing 329 n y C5 C6 SAH sing 330 n y C5 C4 SAH doub 331 n y C6 N6 SAH sing 332 n n C6 N1 SAH doub 333 n y N6 HN61 SAH sing 334 n n N6 HN62 SAH sing 335 n n N1 C2 SAH sing 336 n y C2 N3 SAH doub 337 n y C2 H2 SAH sing 338 n n N3 C4 SAH sing 339 n y # _atom_sites.entry_id 3KQQ _atom_sites.fract_transf_matrix[1][1] 0.010639 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 2001 2001 SAH SAH . D 3 ES6 A 1 290 1 ES6 ES6 . E 2 SAH B 1 2002 2002 SAH SAH . F 3 ES6 B 1 290 2 ES6 ES6 . G 4 HOH A 1 2004 2004 HOH HOH . G 4 HOH A 2 2016 2016 HOH HOH . G 4 HOH A 3 2021 2021 HOH HOH . G 4 HOH A 4 2024 2024 HOH HOH . G 4 HOH A 5 2028 2028 HOH HOH . G 4 HOH A 6 2033 2033 HOH HOH . G 4 HOH A 7 2036 2036 HOH HOH . G 4 HOH A 8 2041 2041 HOH HOH . G 4 HOH A 9 2042 2042 HOH HOH . G 4 HOH A 10 2045 2045 HOH HOH . G 4 HOH A 11 2048 2048 HOH HOH . G 4 HOH A 12 2054 2054 HOH HOH . G 4 HOH A 13 2060 2060 HOH HOH . G 4 HOH A 14 2064 2064 HOH HOH . G 4 HOH A 15 2065 2065 HOH HOH . G 4 HOH A 16 2067 2067 HOH HOH . G 4 HOH A 17 2072 2072 HOH HOH . G 4 HOH A 18 2073 2073 HOH HOH . G 4 HOH A 19 2074 2074 HOH HOH . G 4 HOH A 20 2077 2077 HOH HOH . G 4 HOH A 21 2082 2082 HOH HOH . G 4 HOH A 22 2083 2083 HOH HOH . G 4 HOH A 23 2089 2089 HOH HOH . G 4 HOH A 24 2093 2093 HOH HOH . G 4 HOH A 25 2095 2095 HOH HOH . G 4 HOH A 26 2097 2097 HOH HOH . G 4 HOH A 27 2099 2099 HOH HOH . G 4 HOH A 28 2102 2102 HOH HOH . G 4 HOH A 29 2103 2103 HOH HOH . G 4 HOH A 30 2104 2104 HOH HOH . G 4 HOH A 31 2105 2105 HOH HOH . G 4 HOH A 32 2106 2106 HOH HOH . G 4 HOH A 33 2107 2107 HOH HOH . G 4 HOH A 34 2108 2108 HOH HOH . G 4 HOH A 35 2112 2112 HOH HOH . G 4 HOH A 36 2113 2113 HOH HOH . G 4 HOH A 37 2115 2115 HOH HOH . G 4 HOH A 38 2117 2117 HOH HOH . G 4 HOH A 39 2118 2118 HOH HOH . G 4 HOH A 40 2119 2119 HOH HOH . G 4 HOH A 41 2123 2123 HOH HOH . G 4 HOH A 42 2126 2126 HOH HOH . G 4 HOH A 43 2127 2127 HOH HOH . G 4 HOH A 44 2130 2130 HOH HOH . G 4 HOH A 45 2131 2131 HOH HOH . G 4 HOH A 46 2135 2135 HOH HOH . G 4 HOH A 47 2141 2141 HOH HOH . G 4 HOH A 48 2144 2144 HOH HOH . G 4 HOH A 49 2149 2149 HOH HOH . G 4 HOH A 50 2150 2150 HOH HOH . G 4 HOH A 51 2151 2151 HOH HOH . G 4 HOH A 52 2152 2152 HOH HOH . G 4 HOH A 53 2153 2153 HOH HOH . G 4 HOH A 54 2154 2154 HOH HOH . G 4 HOH A 55 2155 2155 HOH HOH . G 4 HOH A 56 2156 2156 HOH HOH . G 4 HOH A 57 2157 2157 HOH HOH . G 4 HOH A 58 2158 2158 HOH HOH . G 4 HOH A 59 2159 2159 HOH HOH . G 4 HOH A 60 2160 2160 HOH HOH . G 4 HOH A 61 2161 2161 HOH HOH . G 4 HOH A 62 2162 2162 HOH HOH . G 4 HOH A 63 2163 2163 HOH HOH . H 4 HOH B 1 2005 2005 HOH HOH . H 4 HOH B 2 2006 2006 HOH HOH . H 4 HOH B 3 2009 2009 HOH HOH . H 4 HOH B 4 2010 2010 HOH HOH . H 4 HOH B 5 2012 2012 HOH HOH . H 4 HOH B 6 2014 2014 HOH HOH . H 4 HOH B 7 2015 2015 HOH HOH . H 4 HOH B 8 2019 2019 HOH HOH . H 4 HOH B 9 2020 2020 HOH HOH . H 4 HOH B 10 2022 2022 HOH HOH . H 4 HOH B 11 2023 2023 HOH HOH . H 4 HOH B 12 2025 2025 HOH HOH . H 4 HOH B 13 2026 2026 HOH HOH . H 4 HOH B 14 2027 2027 HOH HOH . H 4 HOH B 15 2031 2031 HOH HOH . H 4 HOH B 16 2032 2032 HOH HOH . H 4 HOH B 17 2034 2034 HOH HOH . H 4 HOH B 18 2035 2035 HOH HOH . H 4 HOH B 19 2037 2037 HOH HOH . H 4 HOH B 20 2039 2039 HOH HOH . H 4 HOH B 21 2040 2040 HOH HOH . H 4 HOH B 22 2043 2043 HOH HOH . H 4 HOH B 23 2047 2047 HOH HOH . H 4 HOH B 24 2049 2049 HOH HOH . H 4 HOH B 25 2051 2051 HOH HOH . H 4 HOH B 26 2052 2052 HOH HOH . H 4 HOH B 27 2053 2053 HOH HOH . H 4 HOH B 28 2055 2055 HOH HOH . H 4 HOH B 29 2056 2056 HOH HOH . H 4 HOH B 30 2057 2057 HOH HOH . H 4 HOH B 31 2058 2058 HOH HOH . H 4 HOH B 32 2059 2059 HOH HOH . H 4 HOH B 33 2062 2062 HOH HOH . H 4 HOH B 34 2063 2063 HOH HOH . H 4 HOH B 35 2068 2068 HOH HOH . H 4 HOH B 36 2069 2069 HOH HOH . H 4 HOH B 37 2070 2070 HOH HOH . H 4 HOH B 38 2071 2071 HOH HOH . H 4 HOH B 39 2078 2078 HOH HOH . H 4 HOH B 40 2079 2079 HOH HOH . H 4 HOH B 41 2080 2080 HOH HOH . H 4 HOH B 42 2081 2081 HOH HOH . H 4 HOH B 43 2085 2085 HOH HOH . H 4 HOH B 44 2088 2088 HOH HOH . H 4 HOH B 45 2090 2090 HOH HOH . H 4 HOH B 46 2091 2091 HOH HOH . H 4 HOH B 47 2092 2092 HOH HOH . H 4 HOH B 48 2094 2094 HOH HOH . H 4 HOH B 49 2096 2096 HOH HOH . H 4 HOH B 50 2100 2100 HOH HOH . H 4 HOH B 51 2101 2101 HOH HOH . H 4 HOH B 52 2109 2109 HOH HOH . H 4 HOH B 53 2110 2110 HOH HOH . H 4 HOH B 54 2111 2111 HOH HOH . H 4 HOH B 55 2114 2114 HOH HOH . H 4 HOH B 56 2120 2120 HOH HOH . H 4 HOH B 57 2121 2121 HOH HOH . H 4 HOH B 58 2122 2122 HOH HOH . H 4 HOH B 59 2128 2128 HOH HOH . H 4 HOH B 60 2129 2129 HOH HOH . H 4 HOH B 61 2132 2132 HOH HOH . H 4 HOH B 62 2133 2133 HOH HOH . H 4 HOH B 63 2134 2134 HOH HOH . H 4 HOH B 64 2137 2137 HOH HOH . H 4 HOH B 65 2138 2138 HOH HOH . H 4 HOH B 66 2140 2140 HOH HOH . H 4 HOH B 67 2142 2142 HOH HOH . H 4 HOH B 68 2143 2143 HOH HOH . H 4 HOH B 69 2145 2145 HOH HOH . H 4 HOH B 70 2146 2146 HOH HOH . H 4 HOH B 71 2147 2147 HOH HOH . H 4 HOH B 72 2148 2148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 2 26.99 53.133 17.947 1 44.22 ? N SAH 2001 A 1 HETATM 2 C CA SAH . . . C 2 28.096 52.266 17.549 1 45.65 ? CA SAH 2001 A 1 HETATM 3 C CB SAH . . . C 2 28.445 51.448 18.795 1 61.67 ? CB SAH 2001 A 1 HETATM 4 C CG SAH . . . C 2 29.774 51.912 19.389 1 71.54 ? CG SAH 2001 A 1 HETATM 5 S SD SAH . . . C 2 30.242 50.633 20.594 1 50.61 ? SD SAH 2001 A 1 HETATM 6 C C SAH . . . C 2 27.619 51.241 16.5 1 46.47 ? C SAH 2001 A 1 HETATM 7 O O SAH . . . C 2 26.456 51.074 16.304 1 48.1 ? O SAH 2001 A 1 HETATM 8 O OXT SAH . . . C 2 28.477 50.182 16.207 1 33.32 ? OXT SAH 2001 A 1 HETATM 9 C C5' SAH . . . C 2 29.909 51.253 22.268 1 67.48 ? C5' SAH 2001 A 1 HETATM 10 C C4' SAH . . . C 2 30.107 52.777 22.311 1 65.26 ? C4' SAH 2001 A 1 HETATM 11 O O4' SAH . . . C 2 29.736 53.273 23.633 1 59.27 ? O4' SAH 2001 A 1 HETATM 12 C C3' SAH . . . C 2 31.571 53.199 22.068 1 62.29 ? C3' SAH 2001 A 1 HETATM 13 O O3' SAH . . . C 2 31.659 54.142 21.023 1 53.28 ? O3' SAH 2001 A 1 HETATM 14 C C2' SAH . . . C 2 31.949 53.811 23.39 1 54.71 ? C2' SAH 2001 A 1 HETATM 15 O O2' SAH . . . C 2 33.033 54.712 23.379 1 47.41 ? O2' SAH 2001 A 1 HETATM 16 C C1' SAH . . . C 2 30.635 54.394 23.89 1 54.62 ? C1' SAH 2001 A 1 HETATM 17 N N9 SAH . . . C 2 30.728 54.602 25.323 1 50.58 ? N9 SAH 2001 A 1 HETATM 18 C C8 SAH . . . C 2 31.773 54.027 26.23 1 50.72 ? C8 SAH 2001 A 1 HETATM 19 N N7 SAH . . . C 2 31.464 54.455 27.589 1 52.32 ? N7 SAH 2001 A 1 HETATM 20 C C5 SAH . . . C 2 30.237 55.263 27.532 1 52.18 ? C5 SAH 2001 A 1 HETATM 21 C C6 SAH . . . C 2 29.456 55.958 28.603 1 49.56 ? C6 SAH 2001 A 1 HETATM 22 N N6 SAH . . . C 2 29.92 55.872 29.975 1 48.13 ? N6 SAH 2001 A 1 HETATM 23 N N1 SAH . . . C 2 28.251 56.711 28.252 1 55.11 ? N1 SAH 2001 A 1 HETATM 24 C C2 SAH . . . C 2 27.79 56.797 26.819 1 47.56 ? C2 SAH 2001 A 1 HETATM 25 N N3 SAH . . . C 2 28.576 56.117 25.754 1 44.61 ? N3 SAH 2001 A 1 HETATM 26 C C4 SAH . . . C 2 29.785 55.352 26.118 1 49.96 ? C4 SAH 2001 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 383 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 26 #