data_3KR0 # _model_server_result.job_id pcIFpavGBFSVHFf-WN0gsg _model_server_result.datetime_utc '2024-11-02 12:47:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kr0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 3KR0 # _exptl.entry_id 3KR0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 149.15 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-5-HYDROXY-BENZIMIDAZOLE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KR0 _cell.length_a 94.303 _cell.length_b 94.303 _cell.length_c 188.517 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KR0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 48 1_555 B SG CYS 139 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 B SG CYS 48 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'C7 H7 N3 O' _chem_comp.formula_weight 149.15 _chem_comp.id 172 _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-5-HYDROXY-BENZIMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 172 doub 1 n y C1 C6 172 sing 2 n y C1 O17 172 sing 3 n n C2 C3 172 sing 4 n y C2 HC2 172 sing 5 n n C3 C4 172 doub 6 n y C3 N10 172 sing 7 n y C4 C5 172 sing 8 n y C4 N12 172 sing 9 n y C5 C6 172 doub 10 n y C5 HC5 172 sing 11 n n C6 HC6 172 sing 12 n n N10 C11 172 doub 13 n y C11 N12 172 sing 14 n y C11 N14 172 sing 15 n n N12 H12 172 sing 16 n n N14 H141 172 sing 17 n n N14 H142 172 sing 18 n n O17 H17 172 sing 19 n n # _atom_sites.entry_id 3KR0 _atom_sites.fract_transf_matrix[1][1] 0.010604 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005305 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 3001 3001 SAH SAH . D 3 172 A 1 1001 1001 172 172 . E 2 SAH B 1 3002 3002 SAH SAH . F 3 172 B 1 1002 1002 172 172 . G 4 HOH A 1 290 2 HOH HOH . G 4 HOH A 2 291 3 HOH HOH . G 4 HOH A 3 292 4 HOH HOH . G 4 HOH A 4 293 5 HOH HOH . G 4 HOH A 5 294 6 HOH HOH . G 4 HOH A 6 295 11 HOH HOH . G 4 HOH A 7 296 12 HOH HOH . G 4 HOH A 8 297 13 HOH HOH . G 4 HOH A 9 298 15 HOH HOH . G 4 HOH A 10 299 18 HOH HOH . G 4 HOH A 11 300 24 HOH HOH . G 4 HOH A 12 301 25 HOH HOH . G 4 HOH A 13 302 32 HOH HOH . G 4 HOH A 14 303 34 HOH HOH . G 4 HOH A 15 304 37 HOH HOH . G 4 HOH A 16 305 39 HOH HOH . G 4 HOH A 17 306 40 HOH HOH . G 4 HOH A 18 307 42 HOH HOH . G 4 HOH A 19 308 44 HOH HOH . G 4 HOH A 20 309 45 HOH HOH . G 4 HOH A 21 310 49 HOH HOH . G 4 HOH A 22 311 50 HOH HOH . G 4 HOH A 23 312 54 HOH HOH . G 4 HOH A 24 313 55 HOH HOH . G 4 HOH A 25 314 58 HOH HOH . G 4 HOH A 26 315 66 HOH HOH . G 4 HOH A 27 316 67 HOH HOH . G 4 HOH A 28 317 69 HOH HOH . G 4 HOH A 29 318 72 HOH HOH . G 4 HOH A 30 319 73 HOH HOH . G 4 HOH A 31 320 78 HOH HOH . G 4 HOH A 32 321 82 HOH HOH . G 4 HOH A 33 322 84 HOH HOH . G 4 HOH A 34 323 85 HOH HOH . G 4 HOH A 35 324 88 HOH HOH . G 4 HOH A 36 325 89 HOH HOH . G 4 HOH A 37 326 91 HOH HOH . G 4 HOH A 38 327 93 HOH HOH . G 4 HOH A 39 328 96 HOH HOH . G 4 HOH A 40 329 100 HOH HOH . G 4 HOH A 41 330 108 HOH HOH . G 4 HOH A 42 331 109 HOH HOH . G 4 HOH A 43 332 113 HOH HOH . G 4 HOH A 44 333 114 HOH HOH . G 4 HOH A 45 334 115 HOH HOH . G 4 HOH A 46 335 116 HOH HOH . G 4 HOH A 47 336 117 HOH HOH . G 4 HOH A 48 337 119 HOH HOH . G 4 HOH A 49 338 120 HOH HOH . H 4 HOH B 1 290 1 HOH HOH . H 4 HOH B 2 291 8 HOH HOH . H 4 HOH B 3 292 9 HOH HOH . H 4 HOH B 4 293 10 HOH HOH . H 4 HOH B 5 294 14 HOH HOH . H 4 HOH B 6 295 16 HOH HOH . H 4 HOH B 7 296 19 HOH HOH . H 4 HOH B 8 297 21 HOH HOH . H 4 HOH B 9 298 22 HOH HOH . H 4 HOH B 10 299 26 HOH HOH . H 4 HOH B 11 300 29 HOH HOH . H 4 HOH B 12 301 31 HOH HOH . H 4 HOH B 13 302 36 HOH HOH . H 4 HOH B 14 303 41 HOH HOH . H 4 HOH B 15 304 43 HOH HOH . H 4 HOH B 16 305 46 HOH HOH . H 4 HOH B 17 306 47 HOH HOH . H 4 HOH B 18 307 56 HOH HOH . H 4 HOH B 19 308 57 HOH HOH . H 4 HOH B 20 309 59 HOH HOH . H 4 HOH B 21 310 61 HOH HOH . H 4 HOH B 22 311 62 HOH HOH . H 4 HOH B 23 312 64 HOH HOH . H 4 HOH B 24 313 68 HOH HOH . H 4 HOH B 25 314 70 HOH HOH . H 4 HOH B 26 315 71 HOH HOH . H 4 HOH B 27 316 75 HOH HOH . H 4 HOH B 28 317 76 HOH HOH . H 4 HOH B 29 318 77 HOH HOH . H 4 HOH B 30 319 80 HOH HOH . H 4 HOH B 31 320 83 HOH HOH . H 4 HOH B 32 321 86 HOH HOH . H 4 HOH B 33 322 87 HOH HOH . H 4 HOH B 34 323 98 HOH HOH . H 4 HOH B 35 324 102 HOH HOH . H 4 HOH B 36 325 104 HOH HOH . H 4 HOH B 37 326 106 HOH HOH . H 4 HOH B 38 327 107 HOH HOH . H 4 HOH B 39 328 112 HOH HOH . H 4 HOH B 40 329 121 HOH HOH . H 4 HOH B 41 330 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 172 . . . D 3 27.481 42.883 15.24 1 58.27 ? C1 172 1001 A 1 HETATM 2 C C2 172 . . . D 3 27.981 42.672 16.523 1 67.43 ? C2 172 1001 A 1 HETATM 3 C C3 172 . . . D 3 28.409 43.74 17.293 1 71.7 ? C3 172 1001 A 1 HETATM 4 C C4 172 . . . D 3 28.348 45.042 16.801 1 66.56 ? C4 172 1001 A 1 HETATM 5 C C5 172 . . . D 3 27.845 45.261 15.517 1 58.77 ? C5 172 1001 A 1 HETATM 6 C C6 172 . . . D 3 27.409 44.178 14.731 1 57.29 ? C6 172 1001 A 1 HETATM 7 N N10 172 . . . D 3 28.919 43.78 18.525 1 76.61 ? N10 172 1001 A 1 HETATM 8 C C11 172 . . . D 3 29.177 45.056 18.835 1 75.41 ? C11 172 1001 A 1 HETATM 9 N N12 172 . . . D 3 28.828 45.835 17.78 1 70.87 ? N12 172 1001 A 1 HETATM 10 N N14 172 . . . D 3 29.642 45.437 20.029 1 73.23 ? N14 172 1001 A 1 HETATM 11 O O17 172 . . . D 3 26.997 41.802 14.575 1 49.66 ? O17 172 1001 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #