data_3KR0 # _model_server_result.job_id T4Tdrpo-C2XEys7IOsFoJg _model_server_result.datetime_utc '2024-11-22 20:01:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kr0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":3002}' # _entry.id 3KR0 # _exptl.entry_id 3KR0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KR0 _cell.length_a 94.303 _cell.length_b 94.303 _cell.length_c 188.517 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KR0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 48 1_555 B SG CYS 139 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 B SG CYS 48 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 296 n n N HN1 SAH sing 297 n n N HN2 SAH sing 298 n n CA CB SAH sing 299 n n CA C SAH sing 300 n n CA HA SAH sing 301 n n CB CG SAH sing 302 n n CB HB1 SAH sing 303 n n CB HB2 SAH sing 304 n n CG SD SAH sing 305 n n CG HG1 SAH sing 306 n n CG HG2 SAH sing 307 n n SD C5' SAH sing 308 n n C O SAH doub 309 n n C OXT SAH sing 310 n n OXT HXT SAH sing 311 n n C5' C4' SAH sing 312 n n C5' "H5'1" SAH sing 313 n n C5' "H5'2" SAH sing 314 n n C4' O4' SAH sing 315 n n C4' C3' SAH sing 316 n n C4' H4' SAH sing 317 n n O4' C1' SAH sing 318 n n C3' O3' SAH sing 319 n n C3' C2' SAH sing 320 n n C3' H3' SAH sing 321 n n O3' HO3' SAH sing 322 n n C2' O2' SAH sing 323 n n C2' C1' SAH sing 324 n n C2' H2' SAH sing 325 n n O2' HO2' SAH sing 326 n n C1' N9 SAH sing 327 n n C1' H1' SAH sing 328 n n N9 C8 SAH sing 329 n y N9 C4 SAH sing 330 n y C8 N7 SAH doub 331 n y C8 H8 SAH sing 332 n n N7 C5 SAH sing 333 n y C5 C6 SAH sing 334 n y C5 C4 SAH doub 335 n y C6 N6 SAH sing 336 n n C6 N1 SAH doub 337 n y N6 HN61 SAH sing 338 n n N6 HN62 SAH sing 339 n n N1 C2 SAH sing 340 n y C2 N3 SAH doub 341 n y C2 H2 SAH sing 342 n n N3 C4 SAH sing 343 n y # _atom_sites.entry_id 3KR0 _atom_sites.fract_transf_matrix[1][1] 0.010604 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005305 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 3001 3001 SAH SAH . D 3 172 A 1 1001 1001 172 172 . E 2 SAH B 1 3002 3002 SAH SAH . F 3 172 B 1 1002 1002 172 172 . G 4 HOH A 1 290 2 HOH HOH . G 4 HOH A 2 291 3 HOH HOH . G 4 HOH A 3 292 4 HOH HOH . G 4 HOH A 4 293 5 HOH HOH . G 4 HOH A 5 294 6 HOH HOH . G 4 HOH A 6 295 11 HOH HOH . G 4 HOH A 7 296 12 HOH HOH . G 4 HOH A 8 297 13 HOH HOH . G 4 HOH A 9 298 15 HOH HOH . G 4 HOH A 10 299 18 HOH HOH . G 4 HOH A 11 300 24 HOH HOH . G 4 HOH A 12 301 25 HOH HOH . G 4 HOH A 13 302 32 HOH HOH . G 4 HOH A 14 303 34 HOH HOH . G 4 HOH A 15 304 37 HOH HOH . G 4 HOH A 16 305 39 HOH HOH . G 4 HOH A 17 306 40 HOH HOH . G 4 HOH A 18 307 42 HOH HOH . G 4 HOH A 19 308 44 HOH HOH . G 4 HOH A 20 309 45 HOH HOH . G 4 HOH A 21 310 49 HOH HOH . G 4 HOH A 22 311 50 HOH HOH . G 4 HOH A 23 312 54 HOH HOH . G 4 HOH A 24 313 55 HOH HOH . G 4 HOH A 25 314 58 HOH HOH . G 4 HOH A 26 315 66 HOH HOH . G 4 HOH A 27 316 67 HOH HOH . G 4 HOH A 28 317 69 HOH HOH . G 4 HOH A 29 318 72 HOH HOH . G 4 HOH A 30 319 73 HOH HOH . G 4 HOH A 31 320 78 HOH HOH . G 4 HOH A 32 321 82 HOH HOH . G 4 HOH A 33 322 84 HOH HOH . G 4 HOH A 34 323 85 HOH HOH . G 4 HOH A 35 324 88 HOH HOH . G 4 HOH A 36 325 89 HOH HOH . G 4 HOH A 37 326 91 HOH HOH . G 4 HOH A 38 327 93 HOH HOH . G 4 HOH A 39 328 96 HOH HOH . G 4 HOH A 40 329 100 HOH HOH . G 4 HOH A 41 330 108 HOH HOH . G 4 HOH A 42 331 109 HOH HOH . G 4 HOH A 43 332 113 HOH HOH . G 4 HOH A 44 333 114 HOH HOH . G 4 HOH A 45 334 115 HOH HOH . G 4 HOH A 46 335 116 HOH HOH . G 4 HOH A 47 336 117 HOH HOH . G 4 HOH A 48 337 119 HOH HOH . G 4 HOH A 49 338 120 HOH HOH . H 4 HOH B 1 290 1 HOH HOH . H 4 HOH B 2 291 8 HOH HOH . H 4 HOH B 3 292 9 HOH HOH . H 4 HOH B 4 293 10 HOH HOH . H 4 HOH B 5 294 14 HOH HOH . H 4 HOH B 6 295 16 HOH HOH . H 4 HOH B 7 296 19 HOH HOH . H 4 HOH B 8 297 21 HOH HOH . H 4 HOH B 9 298 22 HOH HOH . H 4 HOH B 10 299 26 HOH HOH . H 4 HOH B 11 300 29 HOH HOH . H 4 HOH B 12 301 31 HOH HOH . H 4 HOH B 13 302 36 HOH HOH . H 4 HOH B 14 303 41 HOH HOH . H 4 HOH B 15 304 43 HOH HOH . H 4 HOH B 16 305 46 HOH HOH . H 4 HOH B 17 306 47 HOH HOH . H 4 HOH B 18 307 56 HOH HOH . H 4 HOH B 19 308 57 HOH HOH . H 4 HOH B 20 309 59 HOH HOH . H 4 HOH B 21 310 61 HOH HOH . H 4 HOH B 22 311 62 HOH HOH . H 4 HOH B 23 312 64 HOH HOH . H 4 HOH B 24 313 68 HOH HOH . H 4 HOH B 25 314 70 HOH HOH . H 4 HOH B 26 315 71 HOH HOH . H 4 HOH B 27 316 75 HOH HOH . H 4 HOH B 28 317 76 HOH HOH . H 4 HOH B 29 318 77 HOH HOH . H 4 HOH B 30 319 80 HOH HOH . H 4 HOH B 31 320 83 HOH HOH . H 4 HOH B 32 321 86 HOH HOH . H 4 HOH B 33 322 87 HOH HOH . H 4 HOH B 34 323 98 HOH HOH . H 4 HOH B 35 324 102 HOH HOH . H 4 HOH B 36 325 104 HOH HOH . H 4 HOH B 37 326 106 HOH HOH . H 4 HOH B 38 327 107 HOH HOH . H 4 HOH B 39 328 112 HOH HOH . H 4 HOH B 40 329 121 HOH HOH . H 4 HOH B 41 330 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 2 28.125 51.134 -27.472 1 42.48 ? N SAH 3002 B 1 HETATM 2 C CA SAH . . . E 2 28.894 52.131 -26.771 1 44.73 ? CA SAH 3002 B 1 HETATM 3 C CB SAH . . . E 2 29.935 52.779 -27.684 1 46.52 ? CB SAH 3002 B 1 HETATM 4 C CG SAH . . . E 2 29.279 53.529 -28.85 1 47.19 ? CG SAH 3002 B 1 HETATM 5 S SD SAH . . . E 2 30.456 54.562 -29.773 1 53.99 ? SD SAH 3002 B 1 HETATM 6 C C SAH . . . E 2 27.981 53.186 -26.154 1 48.46 ? C SAH 3002 B 1 HETATM 7 O O SAH . . . E 2 26.912 52.813 -25.782 1 47.26 ? O SAH 3002 B 1 HETATM 8 O OXT SAH . . . E 2 28.601 54.402 -25.827 1 49.93 ? OXT SAH 3002 B 1 HETATM 9 C C5' SAH . . . E 2 30.356 53.829 -31.444 1 46.15 ? C5' SAH 3002 B 1 HETATM 10 C C4' SAH . . . E 2 31.296 52.675 -31.78 1 50.95 ? C4' SAH 3002 B 1 HETATM 11 O O4' SAH . . . E 2 31.065 52.234 -33.072 1 57.5 ? O4' SAH 3002 B 1 HETATM 12 C C3' SAH . . . E 2 32.801 52.848 -31.718 1 54.12 ? C3' SAH 3002 B 1 HETATM 13 O O3' SAH . . . E 2 33.227 52.047 -30.649 1 57.88 ? O3' SAH 3002 B 1 HETATM 14 C C2' SAH . . . E 2 33.257 52.32 -32.913 1 54.11 ? C2' SAH 3002 B 1 HETATM 15 O O2' SAH . . . E 2 34.446 51.568 -32.798 1 52.85 ? O2' SAH 3002 B 1 HETATM 16 C C1' SAH . . . E 2 32.19 51.496 -33.373 1 56.47 ? C1' SAH 3002 B 1 HETATM 17 N N9 SAH . . . E 2 32.308 51.261 -34.801 1 59 ? N9 SAH 3002 B 1 HETATM 18 C C8 SAH . . . E 2 33.013 52.017 -35.642 1 59.66 ? C8 SAH 3002 B 1 HETATM 19 N N7 SAH . . . E 2 32.893 51.478 -36.904 1 57.11 ? N7 SAH 3002 B 1 HETATM 20 C C5 SAH . . . E 2 32.095 50.375 -36.828 1 62.1 ? C5 SAH 3002 B 1 HETATM 21 C C6 SAH . . . E 2 31.664 49.487 -37.782 1 64.7 ? C6 SAH 3002 B 1 HETATM 22 N N6 SAH . . . E 2 32.049 49.678 -39.175 1 59.12 ? N6 SAH 3002 B 1 HETATM 23 N N1 SAH . . . E 2 30.872 48.47 -37.433 1 65.33 ? N1 SAH 3002 B 1 HETATM 24 C C2 SAH . . . E 2 30.499 48.319 -36.14 1 61.59 ? C2 SAH 3002 B 1 HETATM 25 N N3 SAH . . . E 2 30.932 49.202 -35.203 1 61.12 ? N3 SAH 3002 B 1 HETATM 26 C C4 SAH . . . E 2 31.726 50.226 -35.544 1 61.94 ? C4 SAH 3002 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #