data_3KR1 # _model_server_result.job_id C8J9MG_cQLejiGsuUSDfMg _model_server_result.datetime_utc '2024-11-06 15:29:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kr1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":290}' # _entry.id 3KR1 # _exptl.entry_id 3KR1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 167.596 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-chloro-1H-benzimidazol-2-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KR1 _cell.length_a 94.054 _cell.length_b 94.054 _cell.length_c 189.44 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KR1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 48 1_555 B SG CYS 139 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 B SG CYS 48 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C7 H6 Cl N3' _chem_comp.formula_weight 167.596 _chem_comp.id VGD _chem_comp.mon_nstd_flag . _chem_comp.name 6-chloro-1H-benzimidazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CLA CAH VGD sing 424 n n CAH CAC VGD doub 425 n y CAH CAE VGD sing 426 n y CAC CAD VGD sing 427 n y CAD CAK VGD doub 428 n y CAK CAJ VGD sing 429 n y CAK NAG VGD sing 430 n y CAJ CAE VGD doub 431 n y CAJ NAF VGD sing 432 n y NAG CAI VGD doub 433 n y CAI NAF VGD sing 434 n y CAI NAA VGD sing 435 n n CAC HAC VGD sing 436 n n CAD HAD VGD sing 437 n n CAE HAE VGD sing 438 n n NAF HNAF VGD sing 439 n n NAA HNAA VGD sing 440 n n NAA HNAB VGD sing 441 n n # _atom_sites.entry_id 3KR1 _atom_sites.fract_transf_matrix[1][1] 0.010632 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010632 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005279 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 3001 3001 SAH SAH . D 3 VGD A 1 290 1 VGD VGD . E 2 SAH B 1 3002 3002 SAH SAH . F 3 VGD B 1 290 2 VGD VGD . G 4 HOH A 1 291 1 HOH HOH . G 4 HOH A 2 292 2 HOH HOH . G 4 HOH A 3 293 3 HOH HOH . G 4 HOH A 4 294 5 HOH HOH . G 4 HOH A 5 295 6 HOH HOH . G 4 HOH A 6 296 7 HOH HOH . G 4 HOH A 7 297 12 HOH HOH . G 4 HOH A 8 298 13 HOH HOH . G 4 HOH A 9 299 17 HOH HOH . G 4 HOH A 10 300 18 HOH HOH . G 4 HOH A 11 301 19 HOH HOH . G 4 HOH A 12 302 20 HOH HOH . G 4 HOH A 13 303 25 HOH HOH . G 4 HOH A 14 304 26 HOH HOH . G 4 HOH A 15 305 27 HOH HOH . G 4 HOH A 16 306 31 HOH HOH . G 4 HOH A 17 307 34 HOH HOH . G 4 HOH A 18 308 35 HOH HOH . G 4 HOH A 19 309 37 HOH HOH . G 4 HOH A 20 310 38 HOH HOH . G 4 HOH A 21 311 41 HOH HOH . G 4 HOH A 22 312 43 HOH HOH . G 4 HOH A 23 313 45 HOH HOH . G 4 HOH A 24 314 46 HOH HOH . G 4 HOH A 25 315 47 HOH HOH . G 4 HOH A 26 316 49 HOH HOH . G 4 HOH A 27 317 50 HOH HOH . G 4 HOH A 28 318 51 HOH HOH . G 4 HOH A 29 319 52 HOH HOH . G 4 HOH A 30 320 53 HOH HOH . G 4 HOH A 31 321 60 HOH HOH . G 4 HOH A 32 322 61 HOH HOH . G 4 HOH A 33 323 62 HOH HOH . G 4 HOH A 34 324 65 HOH HOH . G 4 HOH A 35 325 67 HOH HOH . G 4 HOH A 36 326 71 HOH HOH . G 4 HOH A 37 327 72 HOH HOH . G 4 HOH A 38 328 73 HOH HOH . G 4 HOH A 39 329 74 HOH HOH . G 4 HOH A 40 330 77 HOH HOH . G 4 HOH A 41 331 79 HOH HOH . G 4 HOH A 42 332 81 HOH HOH . G 4 HOH A 43 333 83 HOH HOH . G 4 HOH A 44 334 84 HOH HOH . G 4 HOH A 45 335 85 HOH HOH . G 4 HOH A 46 336 89 HOH HOH . G 4 HOH A 47 337 90 HOH HOH . G 4 HOH A 48 338 91 HOH HOH . G 4 HOH A 49 339 95 HOH HOH . G 4 HOH A 50 340 96 HOH HOH . G 4 HOH A 51 341 100 HOH HOH . G 4 HOH A 52 342 102 HOH HOH . G 4 HOH A 53 343 107 HOH HOH . G 4 HOH A 54 344 113 HOH HOH . G 4 HOH A 55 345 115 HOH HOH . G 4 HOH A 56 346 117 HOH HOH . G 4 HOH A 57 347 118 HOH HOH . G 4 HOH A 58 348 119 HOH HOH . G 4 HOH A 59 349 120 HOH HOH . G 4 HOH A 60 350 123 HOH HOH . G 4 HOH A 61 351 124 HOH HOH . G 4 HOH A 62 352 126 HOH HOH . G 4 HOH A 63 353 127 HOH HOH . G 4 HOH A 64 354 128 HOH HOH . G 4 HOH A 65 355 132 HOH HOH . G 4 HOH A 66 356 135 HOH HOH . G 4 HOH A 67 357 140 HOH HOH . G 4 HOH A 68 358 141 HOH HOH . G 4 HOH A 69 359 142 HOH HOH . G 4 HOH A 70 360 143 HOH HOH . G 4 HOH A 71 361 144 HOH HOH . G 4 HOH A 72 362 145 HOH HOH . G 4 HOH A 73 363 146 HOH HOH . H 4 HOH B 1 291 4 HOH HOH . H 4 HOH B 2 292 8 HOH HOH . H 4 HOH B 3 293 9 HOH HOH . H 4 HOH B 4 294 10 HOH HOH . H 4 HOH B 5 295 11 HOH HOH . H 4 HOH B 6 296 14 HOH HOH . H 4 HOH B 7 297 15 HOH HOH . H 4 HOH B 8 298 16 HOH HOH . H 4 HOH B 9 299 21 HOH HOH . H 4 HOH B 10 300 22 HOH HOH . H 4 HOH B 11 301 23 HOH HOH . H 4 HOH B 12 302 24 HOH HOH . H 4 HOH B 13 303 28 HOH HOH . H 4 HOH B 14 304 29 HOH HOH . H 4 HOH B 15 305 30 HOH HOH . H 4 HOH B 16 306 32 HOH HOH . H 4 HOH B 17 307 33 HOH HOH . H 4 HOH B 18 308 36 HOH HOH . H 4 HOH B 19 309 39 HOH HOH . H 4 HOH B 20 310 40 HOH HOH . H 4 HOH B 21 311 42 HOH HOH . H 4 HOH B 22 312 44 HOH HOH . H 4 HOH B 23 313 48 HOH HOH . H 4 HOH B 24 314 54 HOH HOH . H 4 HOH B 25 315 55 HOH HOH . H 4 HOH B 26 316 56 HOH HOH . H 4 HOH B 27 317 57 HOH HOH . H 4 HOH B 28 318 58 HOH HOH . H 4 HOH B 29 319 59 HOH HOH . H 4 HOH B 30 320 63 HOH HOH . H 4 HOH B 31 321 66 HOH HOH . H 4 HOH B 32 322 68 HOH HOH . H 4 HOH B 33 323 69 HOH HOH . H 4 HOH B 34 324 70 HOH HOH . H 4 HOH B 35 325 75 HOH HOH . H 4 HOH B 36 326 76 HOH HOH . H 4 HOH B 37 327 78 HOH HOH . H 4 HOH B 38 328 80 HOH HOH . H 4 HOH B 39 329 82 HOH HOH . H 4 HOH B 40 330 86 HOH HOH . H 4 HOH B 41 331 87 HOH HOH . H 4 HOH B 42 332 88 HOH HOH . H 4 HOH B 43 333 92 HOH HOH . H 4 HOH B 44 334 93 HOH HOH . H 4 HOH B 45 335 94 HOH HOH . H 4 HOH B 46 336 97 HOH HOH . H 4 HOH B 47 337 98 HOH HOH . H 4 HOH B 48 338 99 HOH HOH . H 4 HOH B 49 339 101 HOH HOH . H 4 HOH B 50 340 103 HOH HOH . H 4 HOH B 51 341 104 HOH HOH . H 4 HOH B 52 342 105 HOH HOH . H 4 HOH B 53 343 106 HOH HOH . H 4 HOH B 54 344 108 HOH HOH . H 4 HOH B 55 345 109 HOH HOH . H 4 HOH B 56 346 110 HOH HOH . H 4 HOH B 57 347 111 HOH HOH . H 4 HOH B 58 348 112 HOH HOH . H 4 HOH B 59 349 114 HOH HOH . H 4 HOH B 60 350 116 HOH HOH . H 4 HOH B 61 351 121 HOH HOH . H 4 HOH B 62 352 122 HOH HOH . H 4 HOH B 63 353 125 HOH HOH . H 4 HOH B 64 354 129 HOH HOH . H 4 HOH B 65 355 130 HOH HOH . H 4 HOH B 66 356 131 HOH HOH . H 4 HOH B 67 357 133 HOH HOH . H 4 HOH B 68 358 134 HOH HOH . H 4 HOH B 69 359 136 HOH HOH . H 4 HOH B 70 360 137 HOH HOH . H 4 HOH B 71 361 138 HOH HOH . H 4 HOH B 72 362 139 HOH HOH . H 4 HOH B 73 363 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CLA VGD . . . F 3 23.847 61.07 -24.737 1 64.89 ? CLA VGD 290 B 1 HETATM 2 C CAH VGD . . . F 3 24.986 60.035 -25.643 1 56.55 ? CAH VGD 290 B 1 HETATM 3 C CAC VGD . . . F 3 25.625 58.939 -25.071 1 55.48 ? CAC VGD 290 B 1 HETATM 4 C CAD VGD . . . F 3 26.514 58.147 -25.807 1 57.27 ? CAD VGD 290 B 1 HETATM 5 C CAK VGD . . . F 3 26.77 58.466 -27.137 1 60.22 ? CAK VGD 290 B 1 HETATM 6 C CAJ VGD . . . F 3 26.13 59.57 -27.692 1 60.57 ? CAJ VGD 290 B 1 HETATM 7 C CAE VGD . . . F 3 25.246 60.344 -26.958 1 57.19 ? CAE VGD 290 B 1 HETATM 8 N NAG VGD . . . F 3 27.588 57.889 -28.111 1 62.22 ? NAG VGD 290 B 1 HETATM 9 C CAI VGD . . . F 3 27.43 58.663 -29.267 1 66.4 ? CAI VGD 290 B 1 HETATM 10 N NAF VGD . . . F 3 26.539 59.69 -29.002 1 64.72 ? NAF VGD 290 B 1 HETATM 11 N NAA VGD . . . F 3 28.089 58.52 -30.551 1 66.83 ? NAA VGD 290 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #