data_3KR2
#
_model_server_result.job_id            d8VZhMAMs18vJ57zWsR4iw 
_model_server_result.datetime_utc      '2024-11-26 18:59:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kr2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":3002}' 
#
_entry.id    3KR2 
#
_exptl.entry_id    3KR2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KR2 
_cell.length_a            94.426 
_cell.length_b            94.426 
_cell.length_c            188.185 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KR2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 48 A CYS 48 1_555 B SG CYS 139 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 B SG CYS 48 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 295 n n 
N HN1 SAH sing 296 n n 
N HN2 SAH sing 297 n n 
CA CB SAH sing 298 n n 
CA C SAH sing 299 n n 
CA HA SAH sing 300 n n 
CB CG SAH sing 301 n n 
CB HB1 SAH sing 302 n n 
CB HB2 SAH sing 303 n n 
CG SD SAH sing 304 n n 
CG HG1 SAH sing 305 n n 
CG HG2 SAH sing 306 n n 
SD C5' SAH sing 307 n n 
C O SAH doub 308 n n 
C OXT SAH sing 309 n n 
OXT HXT SAH sing 310 n n 
C5' C4' SAH sing 311 n n 
C5' "H5'1" SAH sing 312 n n 
C5' "H5'2" SAH sing 313 n n 
C4' O4' SAH sing 314 n n 
C4' C3' SAH sing 315 n n 
C4' H4' SAH sing 316 n n 
O4' C1' SAH sing 317 n n 
C3' O3' SAH sing 318 n n 
C3' C2' SAH sing 319 n n 
C3' H3' SAH sing 320 n n 
O3' HO3' SAH sing 321 n n 
C2' O2' SAH sing 322 n n 
C2' C1' SAH sing 323 n n 
C2' H2' SAH sing 324 n n 
O2' HO2' SAH sing 325 n n 
C1' N9 SAH sing 326 n n 
C1' H1' SAH sing 327 n n 
N9 C8 SAH sing 328 n y 
N9 C4 SAH sing 329 n y 
C8 N7 SAH doub 330 n y 
C8 H8 SAH sing 331 n n 
N7 C5 SAH sing 332 n y 
C5 C6 SAH sing 333 n y 
C5 C4 SAH doub 334 n y 
C6 N6 SAH sing 335 n n 
C6 N1 SAH doub 336 n y 
N6 HN61 SAH sing 337 n n 
N6 HN62 SAH sing 338 n n 
N1 C2 SAH sing 339 n y 
C2 N3 SAH doub 340 n y 
C2 H2 SAH sing 341 n n 
N3 C4 SAH sing 342 n y 
#
_atom_sites.entry_id                     3KR2 
_atom_sites.fract_transf_matrix[1][1]    0.01059 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01059 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005314 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 3001 3001 SAH SAH . 
D 3 ET2 A 1 1001 1001 ET2 ET2 . 
E 2 SAH B 1 3002 3002 SAH SAH . 
F 3 ET2 B 1 1002 1002 ET2 ET2 . 
G 4 HOH A 1 290 6 HOH HOH . 
G 4 HOH A 2 291 7 HOH HOH . 
G 4 HOH A 3 292 8 HOH HOH . 
G 4 HOH A 4 293 9 HOH HOH . 
G 4 HOH A 5 294 10 HOH HOH . 
G 4 HOH A 6 295 16 HOH HOH . 
G 4 HOH A 7 296 18 HOH HOH . 
G 4 HOH A 8 297 20 HOH HOH . 
G 4 HOH A 9 298 21 HOH HOH . 
G 4 HOH A 10 299 27 HOH HOH . 
G 4 HOH A 11 300 29 HOH HOH . 
G 4 HOH A 12 301 30 HOH HOH . 
G 4 HOH A 13 302 37 HOH HOH . 
G 4 HOH A 14 303 38 HOH HOH . 
G 4 HOH A 15 304 40 HOH HOH . 
G 4 HOH A 16 305 43 HOH HOH . 
G 4 HOH A 17 306 44 HOH HOH . 
G 4 HOH A 18 307 45 HOH HOH . 
G 4 HOH A 19 308 46 HOH HOH . 
G 4 HOH A 20 309 51 HOH HOH . 
G 4 HOH A 21 310 52 HOH HOH . 
G 4 HOH A 22 311 53 HOH HOH . 
G 4 HOH A 23 312 54 HOH HOH . 
G 4 HOH A 24 313 56 HOH HOH . 
G 4 HOH A 25 314 57 HOH HOH . 
G 4 HOH A 26 315 59 HOH HOH . 
G 4 HOH A 27 316 60 HOH HOH . 
G 4 HOH A 28 317 62 HOH HOH . 
G 4 HOH A 29 318 63 HOH HOH . 
G 4 HOH A 30 319 66 HOH HOH . 
G 4 HOH A 31 320 67 HOH HOH . 
G 4 HOH A 32 321 74 HOH HOH . 
G 4 HOH A 33 322 76 HOH HOH . 
G 4 HOH A 34 323 80 HOH HOH . 
G 4 HOH A 35 324 83 HOH HOH . 
G 4 HOH A 36 325 85 HOH HOH . 
G 4 HOH A 37 326 86 HOH HOH . 
G 4 HOH A 38 327 88 HOH HOH . 
G 4 HOH A 39 328 92 HOH HOH . 
G 4 HOH A 40 329 94 HOH HOH . 
G 4 HOH A 41 330 95 HOH HOH . 
G 4 HOH A 42 331 96 HOH HOH . 
G 4 HOH A 43 332 99 HOH HOH . 
G 4 HOH A 44 333 101 HOH HOH . 
G 4 HOH A 45 334 107 HOH HOH . 
G 4 HOH A 46 335 110 HOH HOH . 
G 4 HOH A 47 336 111 HOH HOH . 
G 4 HOH A 48 337 116 HOH HOH . 
G 4 HOH A 49 338 118 HOH HOH . 
G 4 HOH A 50 339 120 HOH HOH . 
G 4 HOH A 51 340 123 HOH HOH . 
G 4 HOH A 52 341 125 HOH HOH . 
G 4 HOH A 53 342 130 HOH HOH . 
G 4 HOH A 54 343 131 HOH HOH . 
G 4 HOH A 55 344 138 HOH HOH . 
G 4 HOH A 56 345 139 HOH HOH . 
G 4 HOH A 57 346 145 HOH HOH . 
G 4 HOH A 58 347 146 HOH HOH . 
G 4 HOH A 59 348 148 HOH HOH . 
G 4 HOH A 60 349 150 HOH HOH . 
G 4 HOH A 61 350 153 HOH HOH . 
G 4 HOH A 62 351 154 HOH HOH . 
G 4 HOH A 63 352 155 HOH HOH . 
G 4 HOH A 64 353 156 HOH HOH . 
G 4 HOH A 65 354 157 HOH HOH . 
G 4 HOH A 66 355 158 HOH HOH . 
G 4 HOH A 67 356 159 HOH HOH . 
G 4 HOH A 68 357 162 HOH HOH . 
G 4 HOH A 69 358 166 HOH HOH . 
G 4 HOH A 70 359 167 HOH HOH . 
G 4 HOH A 71 360 168 HOH HOH . 
G 4 HOH A 72 361 169 HOH HOH . 
G 4 HOH A 73 362 170 HOH HOH . 
H 4 HOH B 1 290 1 HOH HOH . 
H 4 HOH B 2 291 2 HOH HOH . 
H 4 HOH B 3 292 3 HOH HOH . 
H 4 HOH B 4 293 4 HOH HOH . 
H 4 HOH B 5 294 5 HOH HOH . 
H 4 HOH B 6 295 11 HOH HOH . 
H 4 HOH B 7 296 12 HOH HOH . 
H 4 HOH B 8 297 13 HOH HOH . 
H 4 HOH B 9 298 14 HOH HOH . 
H 4 HOH B 10 299 15 HOH HOH . 
H 4 HOH B 11 300 17 HOH HOH . 
H 4 HOH B 12 301 19 HOH HOH . 
H 4 HOH B 13 302 22 HOH HOH . 
H 4 HOH B 14 303 23 HOH HOH . 
H 4 HOH B 15 304 24 HOH HOH . 
H 4 HOH B 16 305 25 HOH HOH . 
H 4 HOH B 17 306 26 HOH HOH . 
H 4 HOH B 18 307 28 HOH HOH . 
H 4 HOH B 19 308 31 HOH HOH . 
H 4 HOH B 20 309 32 HOH HOH . 
H 4 HOH B 21 310 33 HOH HOH . 
H 4 HOH B 22 311 34 HOH HOH . 
H 4 HOH B 23 312 35 HOH HOH . 
H 4 HOH B 24 313 36 HOH HOH . 
H 4 HOH B 25 314 39 HOH HOH . 
H 4 HOH B 26 315 42 HOH HOH . 
H 4 HOH B 27 316 47 HOH HOH . 
H 4 HOH B 28 317 48 HOH HOH . 
H 4 HOH B 29 318 49 HOH HOH . 
H 4 HOH B 30 319 50 HOH HOH . 
H 4 HOH B 31 320 58 HOH HOH . 
H 4 HOH B 32 321 61 HOH HOH . 
H 4 HOH B 33 322 64 HOH HOH . 
H 4 HOH B 34 323 65 HOH HOH . 
H 4 HOH B 35 324 68 HOH HOH . 
H 4 HOH B 36 325 69 HOH HOH . 
H 4 HOH B 37 326 70 HOH HOH . 
H 4 HOH B 38 327 72 HOH HOH . 
H 4 HOH B 39 328 73 HOH HOH . 
H 4 HOH B 40 329 75 HOH HOH . 
H 4 HOH B 41 330 77 HOH HOH . 
H 4 HOH B 42 331 81 HOH HOH . 
H 4 HOH B 43 332 82 HOH HOH . 
H 4 HOH B 44 333 84 HOH HOH . 
H 4 HOH B 45 334 87 HOH HOH . 
H 4 HOH B 46 335 91 HOH HOH . 
H 4 HOH B 47 336 93 HOH HOH . 
H 4 HOH B 48 337 98 HOH HOH . 
H 4 HOH B 49 338 100 HOH HOH . 
H 4 HOH B 50 339 102 HOH HOH . 
H 4 HOH B 51 340 113 HOH HOH . 
H 4 HOH B 52 341 114 HOH HOH . 
H 4 HOH B 53 342 117 HOH HOH . 
H 4 HOH B 54 343 119 HOH HOH . 
H 4 HOH B 55 344 121 HOH HOH . 
H 4 HOH B 56 345 124 HOH HOH . 
H 4 HOH B 57 346 126 HOH HOH . 
H 4 HOH B 58 347 128 HOH HOH . 
H 4 HOH B 59 348 133 HOH HOH . 
H 4 HOH B 60 349 136 HOH HOH . 
H 4 HOH B 61 350 140 HOH HOH . 
H 4 HOH B 62 351 141 HOH HOH . 
H 4 HOH B 63 352 143 HOH HOH . 
H 4 HOH B 64 353 147 HOH HOH . 
H 4 HOH B 65 354 151 HOH HOH . 
H 4 HOH B 66 355 152 HOH HOH . 
H 4 HOH B 67 356 160 HOH HOH . 
H 4 HOH B 68 357 161 HOH HOH . 
H 4 HOH B 69 358 163 HOH HOH . 
H 4 HOH B 70 359 164 HOH HOH . 
H 4 HOH B 71 360 165 HOH HOH . 
H 4 HOH B 72 361 171 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . E 2 28.035 51.208 -27.591 1 43.25 ? N SAH 3002 B 1 
HETATM 2 C CA SAH . . . E 2 28.958 52.07 -26.864 1 44.68 ? CA SAH 3002 B 1 
HETATM 3 C CB SAH . . . E 2 29.977 52.771 -27.784 1 44.57 ? CB SAH 3002 B 1 
HETATM 4 C CG SAH . . . E 2 29.315 53.525 -28.95 1 44.79 ? CG SAH 3002 B 1 
HETATM 5 S SD SAH . . . E 2 30.446 54.669 -29.818 1 48.95 ? SD SAH 3002 B 1 
HETATM 6 C C SAH . . . E 2 28.172 53.103 -26.069 1 41.46 ? C SAH 3002 B 1 
HETATM 7 O O SAH . . . E 2 27.024 52.879 -25.877 1 39.9 ? O SAH 3002 B 1 
HETATM 8 O OXT SAH . . . E 2 28.862 54.252 -25.675 1 43.07 ? OXT SAH 3002 B 1 
HETATM 9 C C5' SAH . . . E 2 30.387 53.998 -31.517 1 43.7 ? C5' SAH 3002 B 1 
HETATM 10 C C4' SAH . . . E 2 31.216 52.728 -31.767 1 46.66 ? C4' SAH 3002 B 1 
HETATM 11 O O4' SAH . . . E 2 31.049 52.26 -33.068 1 52.31 ? O4' SAH 3002 B 1 
HETATM 12 C C3' SAH . . . E 2 32.726 52.785 -31.57 1 48.95 ? C3' SAH 3002 B 1 
HETATM 13 O O3' SAH . . . E 2 33.036 51.884 -30.529 1 43.77 ? O3' SAH 3002 B 1 
HETATM 14 C C2' SAH . . . E 2 33.217 52.347 -32.8 1 49.73 ? C2' SAH 3002 B 1 
HETATM 15 O O2' SAH . . . E 2 34.447 51.663 -32.768 1 49.4 ? O2' SAH 3002 B 1 
HETATM 16 C C1' SAH . . . E 2 32.187 51.515 -33.332 1 49.6 ? C1' SAH 3002 B 1 
HETATM 17 N N9 SAH . . . E 2 32.343 51.269 -34.754 1 53.15 ? N9 SAH 3002 B 1 
HETATM 18 C C8 SAH . . . E 2 33.014 52.043 -35.615 1 54.86 ? C8 SAH 3002 B 1 
HETATM 19 N N7 SAH . . . E 2 32.886 51.517 -36.883 1 49.69 ? N7 SAH 3002 B 1 
HETATM 20 C C5 SAH . . . E 2 32.111 50.398 -36.805 1 56.61 ? C5 SAH 3002 B 1 
HETATM 21 C C6 SAH . . . E 2 31.67 49.512 -37.758 1 60.13 ? C6 SAH 3002 B 1 
HETATM 22 N N6 SAH . . . E 2 31.999 49.691 -39.166 1 57.6 ? N6 SAH 3002 B 1 
HETATM 23 N N1 SAH . . . E 2 30.909 48.485 -37.396 1 61.98 ? N1 SAH 3002 B 1 
HETATM 24 C C2 SAH . . . E 2 30.565 48.326 -36.1 1 54.77 ? C2 SAH 3002 B 1 
HETATM 25 N N3 SAH . . . E 2 30.994 49.202 -35.163 1 51.37 ? N3 SAH 3002 B 1 
HETATM 26 C C4 SAH . . . E 2 31.763 50.234 -35.51 1 56.59 ? C4 SAH 3002 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#