data_3KR3 # _model_server_result.job_id lkXjQoRkMxWuVm_-H1fHNw _model_server_result.datetime_utc '2024-12-27 13:37:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kr3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":252}' # _entry.id 3KR3 # _exptl.entry_id 3KR3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KR3 _cell.length_a 50.667 _cell.length_b 106.921 _cell.length_c 110.657 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KR3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 D CYS 9 1_555 A SG CYS 47 D CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 21 D CYS 21 1_555 A SG CYS 60 D CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf3 A SG CYS 46 D CYS 46 1_555 A SG CYS 51 D CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf5 B SG CYS 149 H CYS 149 1_555 B SG CYS 205 H CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf6 C SG CYS 24 L CYS 24 1_555 C SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 C SG CYS 135 L CYS 135 1_555 C SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3KR3 _atom_sites.fract_transf_matrix[1][1] 0.019737 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009353 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009037 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO H 1 252 2 EDO EDO . E 4 EDO H 1 253 3 EDO EDO . F 4 EDO H 1 254 4 EDO EDO . G 4 EDO L 1 216 1 EDO EDO . H 5 HOH D 1 68 5 HOH HOH . H 5 HOH D 2 69 12 HOH HOH . H 5 HOH D 3 70 28 HOH HOH . H 5 HOH D 4 71 34 HOH HOH . H 5 HOH D 5 72 48 HOH HOH . H 5 HOH D 6 73 49 HOH HOH . H 5 HOH D 7 74 61 HOH HOH . H 5 HOH D 8 75 65 HOH HOH . H 5 HOH D 9 76 66 HOH HOH . H 5 HOH D 10 79 79 HOH HOH . H 5 HOH D 11 89 89 HOH HOH . H 5 HOH D 12 92 92 HOH HOH . H 5 HOH D 13 94 94 HOH HOH . H 5 HOH D 14 95 95 HOH HOH . H 5 HOH D 15 96 96 HOH HOH . H 5 HOH D 16 97 97 HOH HOH . H 5 HOH D 17 98 98 HOH HOH . H 5 HOH D 18 117 117 HOH HOH . H 5 HOH D 19 131 131 HOH HOH . H 5 HOH D 20 132 132 HOH HOH . H 5 HOH D 21 133 133 HOH HOH . H 5 HOH D 22 134 134 HOH HOH . H 5 HOH D 23 150 150 HOH HOH . H 5 HOH D 24 157 157 HOH HOH . H 5 HOH D 25 170 170 HOH HOH . H 5 HOH D 26 172 172 HOH HOH . H 5 HOH D 27 173 173 HOH HOH . H 5 HOH D 28 184 184 HOH HOH . H 5 HOH D 29 185 185 HOH HOH . I 5 HOH H 1 255 1 HOH HOH . I 5 HOH H 2 256 6 HOH HOH . I 5 HOH H 3 257 9 HOH HOH . I 5 HOH H 4 258 11 HOH HOH . I 5 HOH H 5 259 15 HOH HOH . I 5 HOH H 6 260 16 HOH HOH . I 5 HOH H 7 261 17 HOH HOH . I 5 HOH H 8 262 18 HOH HOH . I 5 HOH H 9 263 19 HOH HOH . I 5 HOH H 10 264 20 HOH HOH . I 5 HOH H 11 265 25 HOH HOH . I 5 HOH H 12 266 27 HOH HOH . I 5 HOH H 13 267 33 HOH HOH . I 5 HOH H 14 268 37 HOH HOH . I 5 HOH H 15 269 38 HOH HOH . I 5 HOH H 16 270 40 HOH HOH . I 5 HOH H 17 271 41 HOH HOH . I 5 HOH H 18 272 42 HOH HOH . I 5 HOH H 19 273 43 HOH HOH . I 5 HOH H 20 274 44 HOH HOH . I 5 HOH H 21 275 45 HOH HOH . I 5 HOH H 22 276 46 HOH HOH . I 5 HOH H 23 277 50 HOH HOH . I 5 HOH H 24 278 52 HOH HOH . I 5 HOH H 25 279 53 HOH HOH . I 5 HOH H 26 280 54 HOH HOH . I 5 HOH H 27 281 57 HOH HOH . I 5 HOH H 28 282 59 HOH HOH . I 5 HOH H 29 283 68 HOH HOH . I 5 HOH H 30 284 73 HOH HOH . I 5 HOH H 31 285 74 HOH HOH . I 5 HOH H 32 286 82 HOH HOH . I 5 HOH H 33 287 86 HOH HOH . I 5 HOH H 34 288 90 HOH HOH . I 5 HOH H 35 289 91 HOH HOH . I 5 HOH H 36 290 93 HOH HOH . I 5 HOH H 37 291 99 HOH HOH . I 5 HOH H 38 292 100 HOH HOH . I 5 HOH H 39 293 101 HOH HOH . I 5 HOH H 40 294 102 HOH HOH . I 5 HOH H 41 295 104 HOH HOH . I 5 HOH H 42 296 106 HOH HOH . I 5 HOH H 43 297 107 HOH HOH . I 5 HOH H 44 298 108 HOH HOH . I 5 HOH H 45 299 109 HOH HOH . I 5 HOH H 46 300 110 HOH HOH . I 5 HOH H 47 301 130 HOH HOH . I 5 HOH H 48 302 135 HOH HOH . I 5 HOH H 49 303 136 HOH HOH . I 5 HOH H 50 304 137 HOH HOH . I 5 HOH H 51 305 138 HOH HOH . I 5 HOH H 52 306 139 HOH HOH . I 5 HOH H 53 307 140 HOH HOH . I 5 HOH H 54 308 141 HOH HOH . I 5 HOH H 55 309 149 HOH HOH . I 5 HOH H 56 310 151 HOH HOH . I 5 HOH H 57 311 159 HOH HOH . I 5 HOH H 58 312 160 HOH HOH . I 5 HOH H 59 313 161 HOH HOH . I 5 HOH H 60 314 162 HOH HOH . I 5 HOH H 61 315 165 HOH HOH . I 5 HOH H 62 316 167 HOH HOH . I 5 HOH H 63 317 169 HOH HOH . I 5 HOH H 64 318 171 HOH HOH . I 5 HOH H 65 319 174 HOH HOH . I 5 HOH H 66 320 179 HOH HOH . I 5 HOH H 67 321 181 HOH HOH . I 5 HOH H 68 322 183 HOH HOH . I 5 HOH H 69 323 186 HOH HOH . I 5 HOH H 70 324 187 HOH HOH . I 5 HOH H 71 325 194 HOH HOH . J 5 HOH L 1 217 2 HOH HOH . J 5 HOH L 2 218 3 HOH HOH . J 5 HOH L 3 219 4 HOH HOH . J 5 HOH L 4 220 7 HOH HOH . J 5 HOH L 5 221 8 HOH HOH . J 5 HOH L 6 222 10 HOH HOH . J 5 HOH L 7 223 13 HOH HOH . J 5 HOH L 8 224 14 HOH HOH . J 5 HOH L 9 225 21 HOH HOH . J 5 HOH L 10 226 22 HOH HOH . J 5 HOH L 11 227 23 HOH HOH . J 5 HOH L 12 228 24 HOH HOH . J 5 HOH L 13 229 26 HOH HOH . J 5 HOH L 14 230 29 HOH HOH . J 5 HOH L 15 231 30 HOH HOH . J 5 HOH L 16 232 31 HOH HOH . J 5 HOH L 17 233 32 HOH HOH . J 5 HOH L 18 234 35 HOH HOH . J 5 HOH L 19 235 36 HOH HOH . J 5 HOH L 20 236 39 HOH HOH . J 5 HOH L 21 237 47 HOH HOH . J 5 HOH L 22 238 51 HOH HOH . J 5 HOH L 23 239 55 HOH HOH . J 5 HOH L 24 240 56 HOH HOH . J 5 HOH L 25 241 58 HOH HOH . J 5 HOH L 26 242 60 HOH HOH . J 5 HOH L 27 243 62 HOH HOH . J 5 HOH L 28 244 63 HOH HOH . J 5 HOH L 29 245 64 HOH HOH . J 5 HOH L 30 246 67 HOH HOH . J 5 HOH L 31 247 69 HOH HOH . J 5 HOH L 32 248 70 HOH HOH . J 5 HOH L 33 249 71 HOH HOH . J 5 HOH L 34 250 72 HOH HOH . J 5 HOH L 35 251 75 HOH HOH . J 5 HOH L 36 252 76 HOH HOH . J 5 HOH L 37 253 77 HOH HOH . J 5 HOH L 38 254 78 HOH HOH . J 5 HOH L 39 255 80 HOH HOH . J 5 HOH L 40 256 81 HOH HOH . J 5 HOH L 41 257 83 HOH HOH . J 5 HOH L 42 258 84 HOH HOH . J 5 HOH L 43 259 85 HOH HOH . J 5 HOH L 44 260 87 HOH HOH . J 5 HOH L 45 261 88 HOH HOH . J 5 HOH L 46 262 103 HOH HOH . J 5 HOH L 47 263 105 HOH HOH . J 5 HOH L 48 264 111 HOH HOH . J 5 HOH L 49 265 112 HOH HOH . J 5 HOH L 50 266 113 HOH HOH . J 5 HOH L 51 267 114 HOH HOH . J 5 HOH L 52 268 115 HOH HOH . J 5 HOH L 53 269 116 HOH HOH . J 5 HOH L 54 270 118 HOH HOH . J 5 HOH L 55 271 119 HOH HOH . J 5 HOH L 56 272 120 HOH HOH . J 5 HOH L 57 273 121 HOH HOH . J 5 HOH L 58 274 122 HOH HOH . J 5 HOH L 59 275 123 HOH HOH . J 5 HOH L 60 276 124 HOH HOH . J 5 HOH L 61 277 125 HOH HOH . J 5 HOH L 62 278 126 HOH HOH . J 5 HOH L 63 279 127 HOH HOH . J 5 HOH L 64 280 128 HOH HOH . J 5 HOH L 65 281 129 HOH HOH . J 5 HOH L 66 282 142 HOH HOH . J 5 HOH L 67 283 143 HOH HOH . J 5 HOH L 68 284 144 HOH HOH . J 5 HOH L 69 285 145 HOH HOH . J 5 HOH L 70 286 146 HOH HOH . J 5 HOH L 71 287 147 HOH HOH . J 5 HOH L 72 288 148 HOH HOH . J 5 HOH L 73 289 152 HOH HOH . J 5 HOH L 74 290 153 HOH HOH . J 5 HOH L 75 291 154 HOH HOH . J 5 HOH L 76 292 155 HOH HOH . J 5 HOH L 77 293 156 HOH HOH . J 5 HOH L 78 294 158 HOH HOH . J 5 HOH L 79 295 163 HOH HOH . J 5 HOH L 80 296 164 HOH HOH . J 5 HOH L 81 297 166 HOH HOH . J 5 HOH L 82 298 168 HOH HOH . J 5 HOH L 83 299 175 HOH HOH . J 5 HOH L 84 300 176 HOH HOH . J 5 HOH L 85 301 177 HOH HOH . J 5 HOH L 86 302 178 HOH HOH . J 5 HOH L 87 303 180 HOH HOH . J 5 HOH L 88 304 182 HOH HOH . J 5 HOH L 89 305 188 HOH HOH . J 5 HOH L 90 306 189 HOH HOH . J 5 HOH L 91 307 190 HOH HOH . J 5 HOH L 92 308 191 HOH HOH . J 5 HOH L 93 309 192 HOH HOH . J 5 HOH L 94 310 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 20.488 18.893 6.501 1 35.06 ? C1 EDO 252 H 1 HETATM 2 O O1 EDO . . . D 4 21.432 19.929 6.197 1 35 ? O1 EDO 252 H 1 HETATM 3 C C2 EDO . . . D 4 20.198 18.829 7.989 1 35 ? C2 EDO 252 H 1 HETATM 4 O O2 EDO . . . D 4 21.376 18.389 8.676 1 41.33 ? O2 EDO 252 H 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #