data_3KSZ
#
_model_server_result.job_id            rTMovRXRnaAw4_c5qoOOwQ 
_model_server_result.datetime_utc      '2024-11-23 12:33:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ksz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":0}' 
#
_entry.id    3KSZ 
#
_exptl.entry_id    3KSZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.61 
_cell.angle_gamma         90 
_cell.entry_id            3KSZ 
_cell.length_a            67.872 
_cell.length_b            93.596 
_cell.length_c            89.884 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KSZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 254 n n 
PA O2A NAD sing 255 n n 
PA O5B NAD sing 256 n n 
PA O3 NAD sing 257 n n 
O2A HOA2 NAD sing 258 n n 
O5B C5B NAD sing 259 n n 
C5B C4B NAD sing 260 n n 
C5B H51A NAD sing 261 n n 
C5B H52A NAD sing 262 n n 
C4B O4B NAD sing 263 n n 
C4B C3B NAD sing 264 n n 
C4B H4B NAD sing 265 n n 
O4B C1B NAD sing 266 n n 
C3B O3B NAD sing 267 n n 
C3B C2B NAD sing 268 n n 
C3B H3B NAD sing 269 n n 
O3B HO3A NAD sing 270 n n 
C2B O2B NAD sing 271 n n 
C2B C1B NAD sing 272 n n 
C2B H2B NAD sing 273 n n 
O2B HO2A NAD sing 274 n n 
C1B N9A NAD sing 275 n n 
C1B H1B NAD sing 276 n n 
N9A C8A NAD sing 277 n y 
N9A C4A NAD sing 278 n y 
C8A N7A NAD doub 279 n y 
C8A H8A NAD sing 280 n n 
N7A C5A NAD sing 281 n y 
C5A C6A NAD sing 282 n y 
C5A C4A NAD doub 283 n y 
C6A N6A NAD sing 284 n n 
C6A N1A NAD doub 285 n y 
N6A H61A NAD sing 286 n n 
N6A H62A NAD sing 287 n n 
N1A C2A NAD sing 288 n y 
C2A N3A NAD doub 289 n y 
C2A H2A NAD sing 290 n n 
N3A C4A NAD sing 291 n y 
O3 PN NAD sing 292 n n 
PN O1N NAD doub 293 n n 
PN O2N NAD sing 294 n n 
PN O5D NAD sing 295 n n 
O5D C5D NAD sing 296 n n 
C5D C4D NAD sing 297 n n 
C5D H51N NAD sing 298 n n 
C5D H52N NAD sing 299 n n 
C4D O4D NAD sing 300 n n 
C4D C3D NAD sing 301 n n 
C4D H4D NAD sing 302 n n 
O4D C1D NAD sing 303 n n 
C3D O3D NAD sing 304 n n 
C3D C2D NAD sing 305 n n 
C3D H3D NAD sing 306 n n 
O3D HO3N NAD sing 307 n n 
C2D O2D NAD sing 308 n n 
C2D C1D NAD sing 309 n n 
C2D H2D NAD sing 310 n n 
O2D HO2N NAD sing 311 n n 
C1D N1N NAD sing 312 n n 
C1D H1D NAD sing 313 n n 
N1N C2N NAD sing 314 n y 
N1N C6N NAD doub 315 n y 
C2N C3N NAD doub 316 n y 
C2N H2N NAD sing 317 n n 
C3N C7N NAD sing 318 n n 
C3N C4N NAD sing 319 n y 
C7N O7N NAD doub 320 n n 
C7N N7N NAD sing 321 n n 
N7N H71N NAD sing 322 n n 
N7N H72N NAD sing 323 n n 
C4N C5N NAD doub 324 n y 
C4N H4N NAD sing 325 n n 
C5N C6N NAD sing 326 n y 
C5N H5N NAD sing 327 n n 
C6N H6N NAD sing 328 n n 
#
_atom_sites.entry_id                     3KSZ 
_atom_sites.fract_transf_matrix[1][1]    0.014734 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004677 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010684 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011672 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD O 1 0 0 NAD NAD . 
F 3 3PG O 1 337 337 3PG 3PG . 
G 2 NAD P 1 0 0 NAD NAD . 
H 3 3PG P 1 337 337 3PG 3PG . 
I 2 NAD R 1 0 0 NAD NAD . 
J 3 3PG R 1 337 337 3PG 3PG . 
K 2 NAD Q 1 0 0 NAD NAD . 
L 3 3PG Q 1 337 337 3PG 3PG . 
M 4 HOH O 1 338 338 HOH HOH . 
M 4 HOH O 2 339 339 HOH HOH . 
M 4 HOH O 3 340 340 HOH HOH . 
M 4 HOH O 4 341 341 HOH HOH . 
M 4 HOH O 5 342 342 HOH HOH . 
M 4 HOH O 6 343 343 HOH HOH . 
M 4 HOH O 7 344 344 HOH HOH . 
M 4 HOH O 8 345 345 HOH HOH . 
M 4 HOH O 9 346 346 HOH HOH . 
M 4 HOH O 10 347 347 HOH HOH . 
M 4 HOH O 11 348 348 HOH HOH . 
M 4 HOH O 12 349 349 HOH HOH . 
M 4 HOH O 13 350 350 HOH HOH . 
M 4 HOH O 14 351 351 HOH HOH . 
M 4 HOH O 15 352 352 HOH HOH . 
M 4 HOH O 16 353 353 HOH HOH . 
M 4 HOH O 17 354 354 HOH HOH . 
M 4 HOH O 18 355 355 HOH HOH . 
M 4 HOH O 19 356 356 HOH HOH . 
M 4 HOH O 20 357 357 HOH HOH . 
M 4 HOH O 21 358 358 HOH HOH . 
M 4 HOH O 22 359 359 HOH HOH . 
M 4 HOH O 23 360 360 HOH HOH . 
M 4 HOH O 24 361 361 HOH HOH . 
M 4 HOH O 25 362 362 HOH HOH . 
M 4 HOH O 26 363 363 HOH HOH . 
N 4 HOH P 1 338 338 HOH HOH . 
N 4 HOH P 2 339 339 HOH HOH . 
N 4 HOH P 3 340 340 HOH HOH . 
N 4 HOH P 4 341 341 HOH HOH . 
N 4 HOH P 5 342 342 HOH HOH . 
N 4 HOH P 6 343 343 HOH HOH . 
N 4 HOH P 7 344 344 HOH HOH . 
N 4 HOH P 8 345 345 HOH HOH . 
N 4 HOH P 9 346 346 HOH HOH . 
N 4 HOH P 10 347 347 HOH HOH . 
N 4 HOH P 11 348 348 HOH HOH . 
N 4 HOH P 12 349 349 HOH HOH . 
N 4 HOH P 13 350 350 HOH HOH . 
N 4 HOH P 14 351 351 HOH HOH . 
N 4 HOH P 15 352 352 HOH HOH . 
N 4 HOH P 16 353 353 HOH HOH . 
N 4 HOH P 17 354 354 HOH HOH . 
N 4 HOH P 18 355 355 HOH HOH . 
N 4 HOH P 19 356 356 HOH HOH . 
N 4 HOH P 20 357 357 HOH HOH . 
N 4 HOH P 21 358 358 HOH HOH . 
N 4 HOH P 22 359 359 HOH HOH . 
N 4 HOH P 23 360 360 HOH HOH . 
N 4 HOH P 24 361 361 HOH HOH . 
N 4 HOH P 25 362 362 HOH HOH . 
N 4 HOH P 26 363 363 HOH HOH . 
N 4 HOH P 27 364 364 HOH HOH . 
N 4 HOH P 28 365 365 HOH HOH . 
N 4 HOH P 29 366 366 HOH HOH . 
N 4 HOH P 30 367 367 HOH HOH . 
N 4 HOH P 31 368 368 HOH HOH . 
N 4 HOH P 32 369 369 HOH HOH . 
O 4 HOH R 1 338 338 HOH HOH . 
O 4 HOH R 2 339 339 HOH HOH . 
O 4 HOH R 3 340 340 HOH HOH . 
O 4 HOH R 4 341 341 HOH HOH . 
O 4 HOH R 5 342 342 HOH HOH . 
O 4 HOH R 6 343 343 HOH HOH . 
O 4 HOH R 7 344 344 HOH HOH . 
O 4 HOH R 8 345 345 HOH HOH . 
O 4 HOH R 9 346 346 HOH HOH . 
O 4 HOH R 10 347 347 HOH HOH . 
O 4 HOH R 11 348 348 HOH HOH . 
O 4 HOH R 12 349 349 HOH HOH . 
O 4 HOH R 13 350 350 HOH HOH . 
O 4 HOH R 14 351 351 HOH HOH . 
O 4 HOH R 15 352 352 HOH HOH . 
O 4 HOH R 16 353 353 HOH HOH . 
O 4 HOH R 17 354 354 HOH HOH . 
O 4 HOH R 18 355 355 HOH HOH . 
P 4 HOH Q 1 338 338 HOH HOH . 
P 4 HOH Q 2 339 339 HOH HOH . 
P 4 HOH Q 3 340 340 HOH HOH . 
P 4 HOH Q 4 341 341 HOH HOH . 
P 4 HOH Q 5 342 342 HOH HOH . 
P 4 HOH Q 6 343 343 HOH HOH . 
P 4 HOH Q 7 344 344 HOH HOH . 
P 4 HOH Q 8 345 345 HOH HOH . 
P 4 HOH Q 9 346 346 HOH HOH . 
P 4 HOH Q 10 347 347 HOH HOH . 
P 4 HOH Q 11 348 348 HOH HOH . 
P 4 HOH Q 12 349 349 HOH HOH . 
P 4 HOH Q 13 350 350 HOH HOH . 
P 4 HOH Q 14 351 351 HOH HOH . 
P 4 HOH Q 15 352 352 HOH HOH . 
P 4 HOH Q 16 353 353 HOH HOH . 
P 4 HOH Q 17 354 354 HOH HOH . 
P 4 HOH Q 18 355 355 HOH HOH . 
P 4 HOH Q 19 356 356 HOH HOH . 
P 4 HOH Q 20 357 357 HOH HOH . 
P 4 HOH Q 21 358 358 HOH HOH . 
P 4 HOH Q 22 359 359 HOH HOH . 
P 4 HOH Q 23 360 360 HOH HOH . 
P 4 HOH Q 24 361 361 HOH HOH . 
P 4 HOH Q 25 362 362 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . K 2 25.476 -28.795 30.291 1 42.45 ? PA NAD 0 Q 1 
HETATM 2 O O1A NAD . . . K 2 24.448 -29.708 29.784 1 46.08 ? O1A NAD 0 Q 1 
HETATM 3 O O2A NAD . . . K 2 25.706 -27.609 29.436 1 50.25 ? O2A NAD 0 Q 1 
HETATM 4 O O5B NAD . . . K 2 26.851 -29.593 30.392 1 43.49 ? O5B NAD 0 Q 1 
HETATM 5 C C5B NAD . . . K 2 27.027 -30.95 30.732 1 39 ? C5B NAD 0 Q 1 
HETATM 6 C C4B NAD . . . K 2 28.144 -31.338 29.792 1 37.22 ? C4B NAD 0 Q 1 
HETATM 7 O O4B NAD . . . K 2 28.809 -32.504 30.167 1 41.22 ? O4B NAD 0 Q 1 
HETATM 8 C C3B NAD . . . K 2 27.609 -31.574 28.4 1 39.94 ? C3B NAD 0 Q 1 
HETATM 9 O O3B NAD . . . K 2 28.547 -30.933 27.541 1 40.99 ? O3B NAD 0 Q 1 
HETATM 10 C C2B NAD . . . K 2 27.556 -33.097 28.302 1 36.9 ? C2B NAD 0 Q 1 
HETATM 11 O O2B NAD . . . K 2 27.747 -33.581 27.001 1 33.41 ? O2B NAD 0 Q 1 
HETATM 12 C C1B NAD . . . K 2 28.684 -33.56 29.209 1 43.4 ? C1B NAD 0 Q 1 
HETATM 13 N N9A NAD . . . K 2 28.41 -34.806 29.982 1 49.73 ? N9A NAD 0 Q 1 
HETATM 14 C C8A NAD . . . K 2 27.211 -35.164 30.549 1 51.09 ? C8A NAD 0 Q 1 
HETATM 15 N N7A NAD . . . K 2 27.375 -36.32 31.225 1 55.6 ? N7A NAD 0 Q 1 
HETATM 16 C C5A NAD . . . K 2 28.665 -36.707 31.133 1 53.95 ? C5A NAD 0 Q 1 
HETATM 17 C C6A NAD . . . K 2 29.368 -37.817 31.632 1 50.57 ? C6A NAD 0 Q 1 
HETATM 18 N N6A NAD . . . K 2 28.735 -38.777 32.279 1 50 ? N6A NAD 0 Q 1 
HETATM 19 N N1A NAD . . . K 2 30.708 -37.969 31.381 1 42.3 ? N1A NAD 0 Q 1 
HETATM 20 C C2A NAD . . . K 2 31.327 -37.018 30.627 1 44.23 ? C2A NAD 0 Q 1 
HETATM 21 N N3A NAD . . . K 2 30.634 -35.915 30.134 1 47.27 ? N3A NAD 0 Q 1 
HETATM 22 C C4A NAD . . . K 2 29.322 -35.754 30.367 1 47.85 ? C4A NAD 0 Q 1 
HETATM 23 O O3 NAD . . . K 2 25.065 -28.426 31.785 1 45.61 ? O3 NAD 0 Q 1 
HETATM 24 P PN NAD . . . K 2 25.554 -27.075 32.502 1 46.15 ? PN NAD 0 Q 1 
HETATM 25 O O1N NAD . . . K 2 24.351 -26.191 32.45 1 29.69 ? O1N NAD 0 Q 1 
HETATM 26 O O2N NAD . . . K 2 26.897 -26.731 31.936 1 34.57 ? O2N NAD 0 Q 1 
HETATM 27 O O5D NAD . . . K 2 25.762 -27.422 34.078 1 35.67 ? O5D NAD 0 Q 1 
HETATM 28 C C5D NAD . . . K 2 26.323 -28.612 34.593 1 40.1 ? C5D NAD 0 Q 1 
HETATM 29 C C4D NAD . . . K 2 26.312 -28.615 36.14 1 42.09 ? C4D NAD 0 Q 1 
HETATM 30 O O4D NAD . . . K 2 26.581 -27.304 36.613 1 42.59 ? O4D NAD 0 Q 1 
HETATM 31 C C3D NAD . . . K 2 24.959 -29 36.733 1 41.95 ? C3D NAD 0 Q 1 
HETATM 32 O O3D NAD . . . K 2 25.08 -29.697 37.948 1 45.15 ? O3D NAD 0 Q 1 
HETATM 33 C C2D NAD . . . K 2 24.333 -27.667 37.064 1 44.83 ? C2D NAD 0 Q 1 
HETATM 34 O O2D NAD . . . K 2 23.442 -27.775 38.138 1 50.6 ? O2D NAD 0 Q 1 
HETATM 35 C C1D NAD . . . K 2 25.531 -26.812 37.433 1 42.51 ? C1D NAD 0 Q 1 
HETATM 36 N N1N NAD . . . K 2 25.256 -25.356 37.288 1 47.53 ? N1N NAD 0 Q 1 
HETATM 37 C C2N NAD . . . K 2 24.526 -24.852 36.223 1 46.76 ? C2N NAD 0 Q 1 
HETATM 38 C C3N NAD . . . K 2 24.28 -23.475 36.121 1 41.37 ? C3N NAD 0 Q 1 
HETATM 39 C C7N NAD . . . K 2 23.687 -22.925 34.859 1 32.38 ? C7N NAD 0 Q 1 
HETATM 40 O O7N NAD . . . K 2 23.935 -23.628 33.684 1 35.83 ? O7N NAD 0 Q 1 
HETATM 41 N N7N NAD . . . K 2 22.95 -21.82 34.859 1 27.94 ? N7N NAD 0 Q 1 
HETATM 42 C C4N NAD . . . K 2 24.774 -22.607 37.102 1 42.16 ? C4N NAD 0 Q 1 
HETATM 43 C C5N NAD . . . K 2 25.501 -23.112 38.173 1 39.36 ? C5N NAD 0 Q 1 
HETATM 44 C C6N NAD . . . K 2 25.728 -24.49 38.252 1 46.29 ? C6N NAD 0 Q 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#