data_3KU1 # _model_server_result.job_id jdTV1TyZs8n-QBXBBseyfw _model_server_result.datetime_utc '2024-11-04 22:54:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ku1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":226}' # _entry.id 3KU1 # _exptl.entry_id 3KU1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KU1 _cell.length_a 142.752 _cell.length_b 142.752 _cell.length_c 148.163 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KU1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 PISA monomeric 1 author_and_software_defined_assembly 7 PISA monomeric 1 author_and_software_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,I 1 1 B 2 1 C,J 3 1 D 4 1 E 5 1 F 6 1 G,K 7 1 H,L 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 262 n n N HN1 SAM sing 263 n n N HN2 SAM sing 264 n n CA C SAM sing 265 n n CA CB SAM sing 266 n n CA HA SAM sing 267 n n C O SAM doub 268 n n C OXT SAM sing 269 n n CB CG SAM sing 270 n n CB HB1 SAM sing 271 n n CB HB2 SAM sing 272 n n CG SD SAM sing 273 n n CG HG1 SAM sing 274 n n CG HG2 SAM sing 275 n n SD CE SAM sing 276 n n SD C5' SAM sing 277 n n CE HE1 SAM sing 278 n n CE HE2 SAM sing 279 n n CE HE3 SAM sing 280 n n C5' C4' SAM sing 281 n n C5' "H5'1" SAM sing 282 n n C5' "H5'2" SAM sing 283 n n C4' O4' SAM sing 284 n n C4' C3' SAM sing 285 n n C4' H4' SAM sing 286 n n O4' C1' SAM sing 287 n n C3' O3' SAM sing 288 n n C3' C2' SAM sing 289 n n C3' H3' SAM sing 290 n n O3' HO3' SAM sing 291 n n C2' O2' SAM sing 292 n n C2' C1' SAM sing 293 n n C2' H2' SAM sing 294 n n O2' HO2' SAM sing 295 n n C1' N9 SAM sing 296 n n C1' H1' SAM sing 297 n n N9 C8 SAM sing 298 n y N9 C4 SAM sing 299 n y C8 N7 SAM doub 300 n y C8 H8 SAM sing 301 n n N7 C5 SAM sing 302 n y C5 C6 SAM sing 303 n y C5 C4 SAM doub 304 n y C6 N6 SAM sing 305 n n C6 N1 SAM doub 306 n y N6 HN61 SAM sing 307 n n N6 HN62 SAM sing 308 n n N1 C2 SAM sing 309 n y C2 N3 SAM doub 310 n y C2 H2 SAM sing 311 n n N3 C4 SAM sing 312 n y # _atom_sites.entry_id 3KU1 _atom_sites.fract_transf_matrix[1][1] 0.007005 _atom_sites.fract_transf_matrix[1][2] 0.004044 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008089 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 SAM A 1 226 1 SAM SAM . J 2 SAM C 1 226 1 SAM SAM . K 2 SAM G 1 226 1 SAM SAM . L 2 SAM H 1 226 1 SAM SAM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . I 2 39.138 33.582 -3.606 1 80.21 ? N SAM 226 A 1 HETATM 2 C CA SAM . . . I 2 40.542 33.222 -3.162 1 80.19 ? CA SAM 226 A 1 HETATM 3 C C SAM . . . I 2 40.492 32.434 -1.876 1 80.25 ? C SAM 226 A 1 HETATM 4 O O SAM . . . I 2 41.272 31.521 -1.66 1 80.22 ? O SAM 226 A 1 HETATM 5 O OXT SAM . . . I 2 39.666 32.704 -1.014 1 81.15 ? OXT SAM 226 A 1 HETATM 6 C CB SAM . . . I 2 41.505 34.382 -2.915 1 79.53 ? CB SAM 226 A 1 HETATM 7 C CG SAM . . . I 2 41.444 34.945 -1.503 1 79.79 ? CG SAM 226 A 1 HETATM 8 S SD SAM . . . I 2 42.576 36.31 -1.111 1 81.72 ? SD SAM 226 A 1 HETATM 9 C CE SAM . . . I 2 42.306 36.43 0.683 1 81.15 ? CE SAM 226 A 1 HETATM 10 C C5' SAM . . . I 2 41.879 37.826 -1.798 1 77.37 ? C5' SAM 226 A 1 HETATM 11 C C4' SAM . . . I 2 42.125 37.939 -3.296 1 75.92 ? C4' SAM 226 A 1 HETATM 12 O O4' SAM . . . I 2 41.026 38.592 -3.902 1 75.87 ? O4' SAM 226 A 1 HETATM 13 C C3' SAM . . . I 2 43.336 38.785 -3.698 1 75.99 ? C3' SAM 226 A 1 HETATM 14 O O3' SAM . . . I 2 44.162 38.022 -4.551 1 78.45 ? O3' SAM 226 A 1 HETATM 15 C C2' SAM . . . I 2 42.785 39.946 -4.501 1 73.6 ? C2' SAM 226 A 1 HETATM 16 O O2' SAM . . . I 2 43.714 40.312 -5.488 1 70.11 ? O2' SAM 226 A 1 HETATM 17 C C1' SAM . . . I 2 41.553 39.23 -5.031 1 71.02 ? C1' SAM 226 A 1 HETATM 18 N N9 SAM . . . I 2 40.575 39.974 -5.847 1 70.43 ? N9 SAM 226 A 1 HETATM 19 C C8 SAM . . . I 2 40.264 39.622 -7.162 1 71.62 ? C8 SAM 226 A 1 HETATM 20 N N7 SAM . . . I 2 39.343 40.449 -7.733 1 69.28 ? N7 SAM 226 A 1 HETATM 21 C C5 SAM . . . I 2 39.087 41.316 -6.764 1 67.4 ? C5 SAM 226 A 1 HETATM 22 C C6 SAM . . . I 2 38.242 42.318 -6.892 1 66.72 ? C6 SAM 226 A 1 HETATM 23 N N6 SAM . . . I 2 37.691 42.377 -8.061 1 67.3 ? N6 SAM 226 A 1 HETATM 24 N N1 SAM . . . I 2 38.063 43.145 -5.832 1 69.48 ? N1 SAM 226 A 1 HETATM 25 C C2 SAM . . . I 2 38.803 42.887 -4.648 1 69.84 ? C2 SAM 226 A 1 HETATM 26 N N3 SAM . . . I 2 39.698 41.837 -4.502 1 64.99 ? N3 SAM 226 A 1 HETATM 27 C C4 SAM . . . I 2 39.822 41.072 -5.579 1 67.59 ? C4 SAM 226 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #