data_3KU1
#
_model_server_result.job_id            YajdUzdrNdWBMkPpjPSW1g 
_model_server_result.datetime_utc      '2024-11-04 22:55:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ku1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":226}' 
#
_entry.id    3KU1 
#
_exptl.entry_id    3KU1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3KU1 
_cell.length_a            142.752 
_cell.length_b            142.752 
_cell.length_c            148.163 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KU1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        143 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
PISA monomeric 1 author_and_software_defined_assembly 7 
PISA monomeric 1 author_and_software_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I 1 1 
B 2 1 
C,J 3 1 
D 4 1 
E 5 1 
F 6 1 
G,K 7 1 
H,L 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 262 n n 
N HN1 SAM sing 263 n n 
N HN2 SAM sing 264 n n 
CA C SAM sing 265 n n 
CA CB SAM sing 266 n n 
CA HA SAM sing 267 n n 
C O SAM doub 268 n n 
C OXT SAM sing 269 n n 
CB CG SAM sing 270 n n 
CB HB1 SAM sing 271 n n 
CB HB2 SAM sing 272 n n 
CG SD SAM sing 273 n n 
CG HG1 SAM sing 274 n n 
CG HG2 SAM sing 275 n n 
SD CE SAM sing 276 n n 
SD C5' SAM sing 277 n n 
CE HE1 SAM sing 278 n n 
CE HE2 SAM sing 279 n n 
CE HE3 SAM sing 280 n n 
C5' C4' SAM sing 281 n n 
C5' "H5'1" SAM sing 282 n n 
C5' "H5'2" SAM sing 283 n n 
C4' O4' SAM sing 284 n n 
C4' C3' SAM sing 285 n n 
C4' H4' SAM sing 286 n n 
O4' C1' SAM sing 287 n n 
C3' O3' SAM sing 288 n n 
C3' C2' SAM sing 289 n n 
C3' H3' SAM sing 290 n n 
O3' HO3' SAM sing 291 n n 
C2' O2' SAM sing 292 n n 
C2' C1' SAM sing 293 n n 
C2' H2' SAM sing 294 n n 
O2' HO2' SAM sing 295 n n 
C1' N9 SAM sing 296 n n 
C1' H1' SAM sing 297 n n 
N9 C8 SAM sing 298 n y 
N9 C4 SAM sing 299 n y 
C8 N7 SAM doub 300 n y 
C8 H8 SAM sing 301 n n 
N7 C5 SAM sing 302 n y 
C5 C6 SAM sing 303 n y 
C5 C4 SAM doub 304 n y 
C6 N6 SAM sing 305 n n 
C6 N1 SAM doub 306 n y 
N6 HN61 SAM sing 307 n n 
N6 HN62 SAM sing 308 n n 
N1 C2 SAM sing 309 n y 
C2 N3 SAM doub 310 n y 
C2 H2 SAM sing 311 n n 
N3 C4 SAM sing 312 n y 
#
_atom_sites.entry_id                     3KU1 
_atom_sites.fract_transf_matrix[1][1]    0.007005 
_atom_sites.fract_transf_matrix[1][2]    0.004044 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008089 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006749 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 SAM A 1 226 1 SAM SAM . 
J 2 SAM C 1 226 1 SAM SAM . 
K 2 SAM G 1 226 1 SAM SAM . 
L 2 SAM H 1 226 1 SAM SAM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . K 2 22.124 105.971 -35.146 1 156.04 ? N SAM 226 G 1 
HETATM 2 C CA SAM . . . K 2 22.178 104.725 -35.863 1 156.42 ? CA SAM 226 G 1 
HETATM 3 C C SAM . . . K 2 23.425 104.678 -36.682 1 156.92 ? C SAM 226 G 1 
HETATM 4 O O SAM . . . K 2 23.287 104.572 -37.881 1 157.23 ? O SAM 226 G 1 
HETATM 5 O OXT SAM . . . K 2 24.536 104.781 -36.163 1 156.88 ? OXT SAM 226 G 1 
HETATM 6 C CB SAM . . . K 2 21.031 104.648 -36.83 1 156.12 ? CB SAM 226 G 1 
HETATM 7 C CG SAM . . . K 2 19.771 105.247 -36.257 1 155.03 ? CG SAM 226 G 1 
HETATM 8 S SD SAM . . . K 2 18.392 105.075 -37.38 1 152.3 ? SD SAM 226 G 1 
HETATM 9 C CE SAM . . . K 2 18.947 106.027 -38.799 1 153.63 ? CE SAM 226 G 1 
HETATM 10 C C5' SAM . . . K 2 17.247 106.255 -36.636 1 151.2 ? C5' SAM 226 G 1 
HETATM 11 C C4' SAM . . . K 2 17.196 106.276 -35.12 1 149.58 ? C4' SAM 226 G 1 
HETATM 12 O O4' SAM . . . K 2 17.027 107.576 -34.651 1 147.5 ? O4' SAM 226 G 1 
HETATM 13 C C3' SAM . . . K 2 16 105.582 -34.509 1 150.14 ? C3' SAM 226 G 1 
HETATM 14 O O3' SAM . . . K 2 16.385 104.281 -34.217 1 151.66 ? O3' SAM 226 G 1 
HETATM 15 C C2' SAM . . . K 2 15.748 106.297 -33.21 1 148.48 ? C2' SAM 226 G 1 
HETATM 16 O O2' SAM . . . K 2 16.115 105.481 -32.119 1 147.22 ? O2' SAM 226 G 1 
HETATM 17 C C1' SAM . . . K 2 16.799 107.367 -33.294 1 145.31 ? C1' SAM 226 G 1 
HETATM 18 N N9 SAM . . . K 2 16.577 108.574 -32.489 1 144.03 ? N9 SAM 226 G 1 
HETATM 19 C C8 SAM . . . K 2 16.989 108.681 -31.203 1 144.27 ? C8 SAM 226 G 1 
HETATM 20 N N7 SAM . . . K 2 16.685 109.884 -30.715 1 143.84 ? N7 SAM 226 G 1 
HETATM 21 C C5 SAM . . . K 2 16.088 110.534 -31.687 1 142.62 ? C5 SAM 226 G 1 
HETATM 22 C C6 SAM . . . K 2 15.602 111.777 -31.674 1 143.01 ? C6 SAM 226 G 1 
HETATM 23 N N6 SAM . . . K 2 15.704 112.481 -30.573 1 143.38 ? N6 SAM 226 G 1 
HETATM 24 N N1 SAM . . . K 2 15.023 112.249 -32.796 1 143.92 ? N1 SAM 226 G 1 
HETATM 25 C C2 SAM . . . K 2 14.948 111.451 -33.908 1 144.19 ? C2 SAM 226 G 1 
HETATM 26 N N3 SAM . . . K 2 15.45 110.189 -33.912 1 142.79 ? N3 SAM 226 G 1 
HETATM 27 C C4 SAM . . . K 2 16.007 109.744 -32.804 1 142.58 ? C4 SAM 226 G 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#