data_3KU1
#
_model_server_result.job_id            AZked5G6l3BlFaD0X4vX3g 
_model_server_result.datetime_utc      '2024-11-04 22:56:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ku1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":226}' 
#
_entry.id    3KU1 
#
_exptl.entry_id    3KU1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3KU1 
_cell.length_a            142.752 
_cell.length_b            142.752 
_cell.length_c            148.163 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KU1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        143 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
PISA monomeric 1 author_and_software_defined_assembly 7 
PISA monomeric 1 author_and_software_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I 1 1 
B 2 1 
C,J 3 1 
D 4 1 
E 5 1 
F 6 1 
G,K 7 1 
H,L 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 262 n n 
N HN1 SAM sing 263 n n 
N HN2 SAM sing 264 n n 
CA C SAM sing 265 n n 
CA CB SAM sing 266 n n 
CA HA SAM sing 267 n n 
C O SAM doub 268 n n 
C OXT SAM sing 269 n n 
CB CG SAM sing 270 n n 
CB HB1 SAM sing 271 n n 
CB HB2 SAM sing 272 n n 
CG SD SAM sing 273 n n 
CG HG1 SAM sing 274 n n 
CG HG2 SAM sing 275 n n 
SD CE SAM sing 276 n n 
SD C5' SAM sing 277 n n 
CE HE1 SAM sing 278 n n 
CE HE2 SAM sing 279 n n 
CE HE3 SAM sing 280 n n 
C5' C4' SAM sing 281 n n 
C5' "H5'1" SAM sing 282 n n 
C5' "H5'2" SAM sing 283 n n 
C4' O4' SAM sing 284 n n 
C4' C3' SAM sing 285 n n 
C4' H4' SAM sing 286 n n 
O4' C1' SAM sing 287 n n 
C3' O3' SAM sing 288 n n 
C3' C2' SAM sing 289 n n 
C3' H3' SAM sing 290 n n 
O3' HO3' SAM sing 291 n n 
C2' O2' SAM sing 292 n n 
C2' C1' SAM sing 293 n n 
C2' H2' SAM sing 294 n n 
O2' HO2' SAM sing 295 n n 
C1' N9 SAM sing 296 n n 
C1' H1' SAM sing 297 n n 
N9 C8 SAM sing 298 n y 
N9 C4 SAM sing 299 n y 
C8 N7 SAM doub 300 n y 
C8 H8 SAM sing 301 n n 
N7 C5 SAM sing 302 n y 
C5 C6 SAM sing 303 n y 
C5 C4 SAM doub 304 n y 
C6 N6 SAM sing 305 n n 
C6 N1 SAM doub 306 n y 
N6 HN61 SAM sing 307 n n 
N6 HN62 SAM sing 308 n n 
N1 C2 SAM sing 309 n y 
C2 N3 SAM doub 310 n y 
C2 H2 SAM sing 311 n n 
N3 C4 SAM sing 312 n y 
#
_atom_sites.entry_id                     3KU1 
_atom_sites.fract_transf_matrix[1][1]    0.007005 
_atom_sites.fract_transf_matrix[1][2]    0.004044 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008089 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006749 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 SAM A 1 226 1 SAM SAM . 
J 2 SAM C 1 226 1 SAM SAM . 
K 2 SAM G 1 226 1 SAM SAM . 
L 2 SAM H 1 226 1 SAM SAM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . L 2 49.377 17.549 39.362 1 81.33 ? N SAM 226 H 1 
HETATM 2 C CA SAM . . . L 2 49.361 18.865 38.656 1 81.17 ? CA SAM 226 H 1 
HETATM 3 C C SAM . . . L 2 48.377 18.719 37.534 1 80.89 ? C SAM 226 H 1 
HETATM 4 O O SAM . . . L 2 48.387 19.426 36.548 1 80.35 ? O SAM 226 H 1 
HETATM 5 O OXT SAM . . . L 2 47.533 17.847 37.627 1 81.52 ? OXT SAM 226 H 1 
HETATM 6 C CB SAM . . . L 2 50.72 19.259 38.117 1 81.09 ? CB SAM 226 H 1 
HETATM 7 C CG SAM . . . L 2 51.136 18.405 36.94 1 81.8 ? CG SAM 226 H 1 
HETATM 8 S SD SAM . . . L 2 52.824 18.781 36.45 1 82.73 ? SD SAM 226 H 1 
HETATM 9 C CE SAM . . . L 2 52.647 18.582 34.646 1 82.54 ? CE SAM 226 H 1 
HETATM 10 C C5' SAM . . . L 2 53.73 17.338 37.068 1 80.53 ? C5' SAM 226 H 1 
HETATM 11 C C4' SAM . . . L 2 53.947 17.374 38.585 1 79.46 ? C4' SAM 226 H 1 
HETATM 12 O O4' SAM . . . L 2 54.182 16.071 39.084 1 79.05 ? O4' SAM 226 H 1 
HETATM 13 C C3' SAM . . . L 2 55.164 18.171 39.095 1 79.64 ? C3' SAM 226 H 1 
HETATM 14 O O3' SAM . . . L 2 54.712 19.187 39.973 1 80.82 ? O3' SAM 226 H 1 
HETATM 15 C C2' SAM . . . L 2 56.003 17.162 39.872 1 77.14 ? C2' SAM 226 H 1 
HETATM 16 O O2' SAM . . . L 2 56.685 17.756 40.947 1 75.81 ? O2' SAM 226 H 1 
HETATM 17 C C1' SAM . . . L 2 54.809 16.344 40.307 1 74.45 ? C1' SAM 226 H 1 
HETATM 18 N N9 SAM . . . L 2 54.953 15.188 41.21 1 74.23 ? N9 SAM 226 H 1 
HETATM 19 C C8 SAM . . . L 2 54.461 15.156 42.519 1 74.89 ? C8 SAM 226 H 1 
HETATM 20 N N7 SAM . . . L 2 54.699 13.965 43.137 1 73.45 ? N7 SAM 226 H 1 
HETATM 21 C C5 SAM . . . L 2 55.331 13.262 42.198 1 71.06 ? C5 SAM 226 H 1 
HETATM 22 C C6 SAM . . . L 2 55.762 12.028 42.352 1 70.46 ? C6 SAM 226 H 1 
HETATM 23 N N6 SAM . . . L 2 55.547 11.518 43.523 1 71.93 ? N6 SAM 226 H 1 
HETATM 24 N N1 SAM . . . L 2 56.377 11.436 41.304 1 72.66 ? N1 SAM 226 H 1 
HETATM 25 C C2 SAM . . . L 2 56.533 12.169 40.11 1 72.73 ? C2 SAM 226 H 1 
HETATM 26 N N3 SAM . . . L 2 56.096 13.461 39.937 1 67.43 ? N3 SAM 226 H 1 
HETATM 27 C C4 SAM . . . L 2 55.503 13.974 40.995 1 70.59 ? C4 SAM 226 H 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#