data_3KU2 # _model_server_result.job_id ZQdG-dcX--HSBPyOxuMWLw _model_server_result.datetime_utc '2024-10-12 16:32:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ku2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":508}' # _entry.id 3KU2 # _exptl.entry_id 3KU2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.26 _cell.angle_gamma 90 _cell.entry_id 3KU2 _cell.length_a 48.01 _cell.length_b 72.912 _cell.length_c 65.018 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KU2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3KU2 _atom_sites.fract_transf_matrix[1][1] 0.020829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002285 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013715 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 508 1 ANP ANP . C 3 UNX A 1 509 1 UNX UNX . D 3 UNX A 1 510 1 UNX UNX . E 3 UNX A 1 511 1 UNX UNX . F 4 HOH A 1 512 1 HOH HOH . F 4 HOH A 2 513 2 HOH HOH . F 4 HOH A 3 514 3 HOH HOH . F 4 HOH A 4 515 5 HOH HOH . F 4 HOH A 5 516 6 HOH HOH . F 4 HOH A 6 517 7 HOH HOH . F 4 HOH A 7 518 8 HOH HOH . F 4 HOH A 8 519 9 HOH HOH . F 4 HOH A 9 520 10 HOH HOH . F 4 HOH A 10 521 11 HOH HOH . F 4 HOH A 11 522 12 HOH HOH . F 4 HOH A 12 523 13 HOH HOH . F 4 HOH A 13 524 14 HOH HOH . F 4 HOH A 14 525 15 HOH HOH . F 4 HOH A 15 526 16 HOH HOH . F 4 HOH A 16 527 17 HOH HOH . F 4 HOH A 17 528 18 HOH HOH . F 4 HOH A 18 529 19 HOH HOH . F 4 HOH A 19 530 20 HOH HOH . F 4 HOH A 20 531 21 HOH HOH . F 4 HOH A 21 532 22 HOH HOH . F 4 HOH A 22 533 23 HOH HOH . F 4 HOH A 23 534 24 HOH HOH . F 4 HOH A 24 535 25 HOH HOH . F 4 HOH A 25 536 26 HOH HOH . F 4 HOH A 26 537 27 HOH HOH . F 4 HOH A 27 538 28 HOH HOH . F 4 HOH A 28 539 29 HOH HOH . F 4 HOH A 29 540 30 HOH HOH . F 4 HOH A 30 541 31 HOH HOH . F 4 HOH A 31 542 32 HOH HOH . F 4 HOH A 32 543 33 HOH HOH . F 4 HOH A 33 544 34 HOH HOH . F 4 HOH A 34 545 35 HOH HOH . F 4 HOH A 35 546 36 HOH HOH . F 4 HOH A 36 547 38 HOH HOH . F 4 HOH A 37 548 39 HOH HOH . F 4 HOH A 38 549 40 HOH HOH . F 4 HOH A 39 550 41 HOH HOH . F 4 HOH A 40 551 42 HOH HOH . F 4 HOH A 41 552 43 HOH HOH . F 4 HOH A 42 553 44 HOH HOH . F 4 HOH A 43 554 45 HOH HOH . F 4 HOH A 44 555 46 HOH HOH . F 4 HOH A 45 556 47 HOH HOH . F 4 HOH A 46 557 48 HOH HOH . F 4 HOH A 47 558 51 HOH HOH . F 4 HOH A 48 559 52 HOH HOH . F 4 HOH A 49 560 53 HOH HOH . F 4 HOH A 50 561 54 HOH HOH . F 4 HOH A 51 562 55 HOH HOH . F 4 HOH A 52 563 56 HOH HOH . F 4 HOH A 53 564 57 HOH HOH . F 4 HOH A 54 565 59 HOH HOH . F 4 HOH A 55 566 60 HOH HOH . F 4 HOH A 56 567 61 HOH HOH . F 4 HOH A 57 568 62 HOH HOH . F 4 HOH A 58 569 63 HOH HOH . F 4 HOH A 59 570 64 HOH HOH . F 4 HOH A 60 571 65 HOH HOH . F 4 HOH A 61 572 66 HOH HOH . F 4 HOH A 62 573 67 HOH HOH . F 4 HOH A 63 574 68 HOH HOH . F 4 HOH A 64 575 69 HOH HOH . F 4 HOH A 65 576 70 HOH HOH . F 4 HOH A 66 577 71 HOH HOH . F 4 HOH A 67 578 73 HOH HOH . F 4 HOH A 68 579 74 HOH HOH . F 4 HOH A 69 580 75 HOH HOH . F 4 HOH A 70 581 76 HOH HOH . F 4 HOH A 71 582 77 HOH HOH . F 4 HOH A 72 583 78 HOH HOH . F 4 HOH A 73 584 79 HOH HOH . F 4 HOH A 74 585 80 HOH HOH . F 4 HOH A 75 586 81 HOH HOH . F 4 HOH A 76 587 82 HOH HOH . F 4 HOH A 77 588 83 HOH HOH . F 4 HOH A 78 589 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 -1.602 -3.901 32.895 1 83.98 ? PG ANP 508 A 1 HETATM 2 P PB ANP . . . B 2 0.081 -1.545 32.395 1 81.56 ? PB ANP 508 A 1 HETATM 3 O O1B ANP . . . B 2 0.722 -0.51 33.247 1 80.93 ? O1B ANP 508 A 1 HETATM 4 O O2B ANP . . . B 2 -0.697 -0.851 31.119 1 81.74 ? O2B ANP 508 A 1 HETATM 5 N N3B ANP . . . B 2 -1.052 -2.376 33.411 1 81.63 ? N3B ANP 508 A 1 HETATM 6 P PA ANP . . . B 2 1.632 -2.737 30.304 1 78.15 ? PA ANP 508 A 1 HETATM 7 O O1A ANP . . . B 2 1.727 -1.373 29.696 1 78.87 ? O1A ANP 508 A 1 HETATM 8 O O2A ANP . . . B 2 0.516 -3.635 29.58 1 78.17 ? O2A ANP 508 A 1 HETATM 9 O O3A ANP . . . B 2 1.316 -2.533 31.909 1 80.16 ? O3A ANP 508 A 1 HETATM 10 O O5' ANP . . . B 2 3.044 -3.532 30.167 1 73.38 ? O5' ANP 508 A 1 HETATM 11 C C5' ANP . . . B 2 4.106 -2.752 30.733 1 71.29 ? C5' ANP 508 A 1 HETATM 12 C C4' ANP . . . B 2 5.381 -3.587 30.835 1 69.69 ? C4' ANP 508 A 1 HETATM 13 O O4' ANP . . . B 2 5.123 -4.849 31.514 1 69.08 ? O4' ANP 508 A 1 HETATM 14 C C3' ANP . . . B 2 6.072 -3.88 29.477 1 70.05 ? C3' ANP 508 A 1 HETATM 15 O O3' ANP . . . B 2 7.503 -3.697 29.652 1 71 ? O3' ANP 508 A 1 HETATM 16 C C2' ANP . . . B 2 5.889 -5.391 29.29 1 69.33 ? C2' ANP 508 A 1 HETATM 17 O O2' ANP . . . B 2 5.247 -5.785 28.125 1 70.56 ? O2' ANP 508 A 1 HETATM 18 C C1' ANP . . . B 2 5.425 -5.976 30.658 1 67.74 ? C1' ANP 508 A 1 HETATM 19 N N9 ANP . . . B 2 4.445 -7.096 30.722 1 66.13 ? N9 ANP 508 A 1 HETATM 20 C C8 ANP . . . B 2 3.078 -6.984 30.858 1 65.65 ? C8 ANP 508 A 1 HETATM 21 N N7 ANP . . . B 2 2.518 -8.143 30.926 1 65.09 ? N7 ANP 508 A 1 HETATM 22 C C5 ANP . . . B 2 3.47 -9.092 30.881 1 65.54 ? C5 ANP 508 A 1 HETATM 23 C C6 ANP . . . B 2 3.472 -10.523 30.93 1 65.19 ? C6 ANP 508 A 1 HETATM 24 N N6 ANP . . . B 2 2.299 -11.188 31.043 1 64.55 ? N6 ANP 508 A 1 HETATM 25 N N1 ANP . . . B 2 4.633 -11.195 30.856 1 66.16 ? N1 ANP 508 A 1 HETATM 26 C C2 ANP . . . B 2 5.793 -10.534 30.774 1 66.08 ? C2 ANP 508 A 1 HETATM 27 N N3 ANP . . . B 2 5.862 -9.188 30.714 1 65.83 ? N3 ANP 508 A 1 HETATM 28 C C4 ANP . . . B 2 4.73 -8.432 30.752 1 65.5 ? C4 ANP 508 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #