data_3KU9 # _model_server_result.job_id uYOM2xRq5jhWIbeVxD37yQ _model_server_result.datetime_utc '2024-11-18 18:39:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ku9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":500}' # _entry.id 3KU9 # _exptl.entry_id 3KU9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KU9 _cell.length_a 138.957 _cell.length_b 138.957 _cell.length_c 189.8 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KU9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,K 1 1 B,C,G,H,I,J,L 2 1 A,B,C,D,E,F,G,H,I,J,K,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG B 600 NAG 2 n C NAG 2 C 2 NAG B 601 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 457 A CYS 457 1_555 A SG CYS 463 A CYS 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf2 B SG CYS 457 B CYS 457 1_555 B SG CYS 463 B CYS 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? covale ? covale1 A ND2 ASN 77 A ASN 77 1_555 E C1 NAG . A NAG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.521 ? covale ? covale2 B ND2 ASN 77 B ASN 77 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 3KU9 _atom_sites.fract_transf_matrix[1][1] 0.007196 _atom_sites.fract_transf_matrix[1][2] 0.004155 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00831 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005269 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 FAD A 1 500 500 FAD FAD . E 4 NAG A 1 600 600 NAG NAG . F 5 SPM A 1 700 700 SPM SPM . G 3 FAD B 1 500 500 FAD FAD . H 5 SPM B 1 700 700 SPM SPM . I 6 CL B 1 479 1 CL CL . J 7 SO4 B 1 480 1 SO4 SO4 . K 8 HOH A 1 479 1 HOH HOH . K 8 HOH A 2 480 2 HOH HOH . K 8 HOH A 3 481 3 HOH HOH . K 8 HOH A 4 482 4 HOH HOH . K 8 HOH A 5 483 5 HOH HOH . K 8 HOH A 6 484 11 HOH HOH . K 8 HOH A 7 485 12 HOH HOH . K 8 HOH A 8 486 22 HOH HOH . K 8 HOH A 9 487 23 HOH HOH . K 8 HOH A 10 488 25 HOH HOH . K 8 HOH A 11 489 26 HOH HOH . K 8 HOH A 12 490 27 HOH HOH . K 8 HOH A 13 491 28 HOH HOH . K 8 HOH A 14 492 30 HOH HOH . K 8 HOH A 15 493 31 HOH HOH . K 8 HOH A 16 494 35 HOH HOH . K 8 HOH A 17 495 37 HOH HOH . K 8 HOH A 18 496 38 HOH HOH . K 8 HOH A 19 497 40 HOH HOH . K 8 HOH A 20 498 44 HOH HOH . K 8 HOH A 21 499 46 HOH HOH . K 8 HOH A 22 501 48 HOH HOH . K 8 HOH A 23 502 52 HOH HOH . K 8 HOH A 24 503 53 HOH HOH . L 8 HOH B 1 481 6 HOH HOH . L 8 HOH B 2 482 7 HOH HOH . L 8 HOH B 3 483 8 HOH HOH . L 8 HOH B 4 484 9 HOH HOH . L 8 HOH B 5 485 10 HOH HOH . L 8 HOH B 6 486 13 HOH HOH . L 8 HOH B 7 487 14 HOH HOH . L 8 HOH B 8 488 15 HOH HOH . L 8 HOH B 9 489 16 HOH HOH . L 8 HOH B 10 490 17 HOH HOH . L 8 HOH B 11 491 18 HOH HOH . L 8 HOH B 12 492 19 HOH HOH . L 8 HOH B 13 493 20 HOH HOH . L 8 HOH B 14 494 21 HOH HOH . L 8 HOH B 15 495 24 HOH HOH . L 8 HOH B 16 496 29 HOH HOH . L 8 HOH B 17 497 32 HOH HOH . L 8 HOH B 18 498 33 HOH HOH . L 8 HOH B 19 499 34 HOH HOH . L 8 HOH B 20 501 36 HOH HOH . L 8 HOH B 21 502 39 HOH HOH . L 8 HOH B 22 503 41 HOH HOH . L 8 HOH B 23 504 42 HOH HOH . L 8 HOH B 24 505 43 HOH HOH . L 8 HOH B 25 506 45 HOH HOH . L 8 HOH B 26 507 49 HOH HOH . L 8 HOH B 27 508 54 HOH HOH . L 8 HOH B 28 509 55 HOH HOH . L 8 HOH B 29 510 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . G 3 -100.332 37.63 19.303 1 16.12 ? PA FAD 500 B 1 HETATM 2 O O1A FAD . . . G 3 -98.939 37.436 18.752 1 15.53 ? O1A FAD 500 B 1 HETATM 3 O O2A FAD . . . G 3 -101.32 36.602 18.792 1 16.67 ? O2A FAD 500 B 1 HETATM 4 O O5B FAD . . . G 3 -100.874 39.129 19.004 1 17.91 ? O5B FAD 500 B 1 HETATM 5 C C5B FAD . . . G 3 -100.103 40.192 18.456 1 18.03 ? C5B FAD 500 B 1 HETATM 6 C C4B FAD . . . G 3 -100.723 40.627 17.128 1 18.63 ? C4B FAD 500 B 1 HETATM 7 O O4B FAD . . . G 3 -100.238 41.895 16.74 1 18.06 ? O4B FAD 500 B 1 HETATM 8 C C3B FAD . . . G 3 -100.36 39.652 16.019 1 19.39 ? C3B FAD 500 B 1 HETATM 9 O O3B FAD . . . G 3 -101.51 39.258 15.308 1 19.47 ? O3B FAD 500 B 1 HETATM 10 C C2B FAD . . . G 3 -99.403 40.426 15.139 1 19.52 ? C2B FAD 500 B 1 HETATM 11 O O2B FAD . . . G 3 -99.559 40.069 13.796 1 19.03 ? O2B FAD 500 B 1 HETATM 12 C C1B FAD . . . G 3 -99.775 41.875 15.404 1 20.16 ? C1B FAD 500 B 1 HETATM 13 N N9A FAD . . . G 3 -98.629 42.807 15.231 1 22.58 ? N9A FAD 500 B 1 HETATM 14 C C8A FAD . . . G 3 -97.307 42.594 15.577 1 23.3 ? C8A FAD 500 B 1 HETATM 15 N N7A FAD . . . G 3 -96.594 43.695 15.233 1 22.94 ? N7A FAD 500 B 1 HETATM 16 C C5A FAD . . . G 3 -97.471 44.716 15.119 1 23.19 ? C5A FAD 500 B 1 HETATM 17 C C6A FAD . . . G 3 -97.308 46.036 14.715 1 23.61 ? C6A FAD 500 B 1 HETATM 18 N N6A FAD . . . G 3 -96.101 46.586 14.675 1 23.33 ? N6A FAD 500 B 1 HETATM 19 N N1A FAD . . . G 3 -98.384 46.708 14.161 1 24.07 ? N1A FAD 500 B 1 HETATM 20 C C2A FAD . . . G 3 -99.662 46.195 14.285 1 23.22 ? C2A FAD 500 B 1 HETATM 21 N N3A FAD . . . G 3 -99.835 44.948 14.844 1 22.38 ? N3A FAD 500 B 1 HETATM 22 C C4A FAD . . . G 3 -98.754 44.166 15.085 1 22.76 ? C4A FAD 500 B 1 HETATM 23 N N1 FAD . . . G 3 -100.599 28.351 24.006 1 21.53 ? N1 FAD 500 B 1 HETATM 24 C C2 FAD . . . G 3 -101.47 27.368 24.447 1 22.23 ? C2 FAD 500 B 1 HETATM 25 O O2 FAD . . . G 3 -102.434 27.679 25.153 1 22.66 ? O2 FAD 500 B 1 HETATM 26 N N3 FAD . . . G 3 -101.439 26.114 23.855 1 22.17 ? N3 FAD 500 B 1 HETATM 27 C C4 FAD . . . G 3 -100.424 25.775 22.975 1 22.37 ? C4 FAD 500 B 1 HETATM 28 O O4 FAD . . . G 3 -100.506 24.692 22.383 1 22.43 ? O4 FAD 500 B 1 HETATM 29 C C4X FAD . . . G 3 -99.475 26.751 22.608 1 22.32 ? C4X FAD 500 B 1 HETATM 30 N N5 FAD . . . G 3 -98.441 26.481 21.714 1 22.11 ? N5 FAD 500 B 1 HETATM 31 C C5X FAD . . . G 3 -97.66 27.504 21.184 1 21.26 ? C5X FAD 500 B 1 HETATM 32 C C6 FAD . . . G 3 -96.725 27.211 20.187 1 20.86 ? C6 FAD 500 B 1 HETATM 33 C C7 FAD . . . G 3 -96.506 28.113 19.145 1 20.33 ? C7 FAD 500 B 1 HETATM 34 C C7M FAD . . . G 3 -95.571 27.719 18.036 1 18.92 ? C7M FAD 500 B 1 HETATM 35 C C8 FAD . . . G 3 -96.936 29.439 19.316 1 20.48 ? C8 FAD 500 B 1 HETATM 36 C C8M FAD . . . G 3 -96.447 30.528 18.406 1 20.92 ? C8M FAD 500 B 1 HETATM 37 C C9 FAD . . . G 3 -97.664 29.798 20.451 1 19.76 ? C9 FAD 500 B 1 HETATM 38 C C9A FAD . . . G 3 -98.036 28.834 21.393 1 20.85 ? C9A FAD 500 B 1 HETATM 39 N N10 FAD . . . G 3 -98.989 29.106 22.371 1 21.38 ? N10 FAD 500 B 1 HETATM 40 C C10 FAD . . . G 3 -99.672 28.076 23.011 1 21.75 ? C10 FAD 500 B 1 HETATM 41 C C1' FAD . . . G 3 -99.067 30.471 22.968 1 21.39 ? C1' FAD 500 B 1 HETATM 42 C C2' FAD . . . G 3 -100.255 31.191 22.365 1 22.44 ? C2' FAD 500 B 1 HETATM 43 O O2' FAD . . . G 3 -100.206 31.104 20.953 1 23.16 ? O2' FAD 500 B 1 HETATM 44 C C3' FAD . . . G 3 -100.167 32.636 22.803 1 23.09 ? C3' FAD 500 B 1 HETATM 45 O O3' FAD . . . G 3 -100.186 32.674 24.202 1 24.43 ? O3' FAD 500 B 1 HETATM 46 C C4' FAD . . . G 3 -101.308 33.486 22.281 1 23.12 ? C4' FAD 500 B 1 HETATM 47 O O4' FAD . . . G 3 -101.912 32.862 21.167 1 24.52 ? O4' FAD 500 B 1 HETATM 48 C C5' FAD . . . G 3 -100.717 34.821 21.866 1 22.41 ? C5' FAD 500 B 1 HETATM 49 O O5' FAD . . . G 3 -101.739 35.746 21.589 1 21.08 ? O5' FAD 500 B 1 HETATM 50 P P FAD . . . G 3 -101.431 37.289 21.889 1 19.83 ? P FAD 500 B 1 HETATM 51 O O1P FAD . . . G 3 -102.666 38.127 21.602 1 18.91 ? O1P FAD 500 B 1 HETATM 52 O O2P FAD . . . G 3 -100.938 37.478 23.312 1 20.37 ? O2P FAD 500 B 1 HETATM 53 O O3P FAD . . . G 3 -100.204 37.585 20.898 1 17.44 ? O3P FAD 500 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 53 #