data_3KUD # _model_server_result.job_id HypTjfuhi6-snGt9IHYcqQ _model_server_result.datetime_utc '2024-12-26 17:50:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kud # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":171}' # _entry.id 3KUD # _exptl.entry_id 3KUD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KUD _cell.length_a 91.13 _cell.length_b 91.13 _cell.length_c 277.98 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KUD _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3KUD _atom_sites.fract_transf_matrix[1][1] 0.010973 _atom_sites.fract_transf_matrix[1][2] 0.006335 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003597 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GDP A 1 170 170 GDP GDP . D 4 MG A 1 171 171 MG MG . E 5 HOH A 1 500 500 HOH HOH . E 5 HOH A 2 501 501 HOH HOH . E 5 HOH A 3 503 503 HOH HOH . E 5 HOH A 4 506 506 HOH HOH . E 5 HOH A 5 507 507 HOH HOH . E 5 HOH A 6 509 509 HOH HOH . E 5 HOH A 7 510 510 HOH HOH . E 5 HOH A 8 511 511 HOH HOH . E 5 HOH A 9 512 512 HOH HOH . E 5 HOH A 10 515 515 HOH HOH . E 5 HOH A 11 516 516 HOH HOH . E 5 HOH A 12 517 517 HOH HOH . E 5 HOH A 13 518 518 HOH HOH . E 5 HOH A 14 519 519 HOH HOH . E 5 HOH A 15 522 522 HOH HOH . E 5 HOH A 16 525 525 HOH HOH . E 5 HOH A 17 533 533 HOH HOH . E 5 HOH A 18 537 537 HOH HOH . E 5 HOH A 19 539 539 HOH HOH . E 5 HOH A 20 541 541 HOH HOH . E 5 HOH A 21 542 542 HOH HOH . E 5 HOH A 22 544 544 HOH HOH . E 5 HOH A 23 545 545 HOH HOH . E 5 HOH A 24 546 546 HOH HOH . E 5 HOH A 25 547 547 HOH HOH . E 5 HOH A 26 548 548 HOH HOH . F 5 HOH B 1 502 502 HOH HOH . F 5 HOH B 2 504 504 HOH HOH . F 5 HOH B 3 505 505 HOH HOH . F 5 HOH B 4 513 513 HOH HOH . F 5 HOH B 5 514 514 HOH HOH . F 5 HOH B 6 521 521 HOH HOH . F 5 HOH B 7 524 524 HOH HOH . F 5 HOH B 8 526 526 HOH HOH . F 5 HOH B 9 528 528 HOH HOH . F 5 HOH B 10 529 529 HOH HOH . F 5 HOH B 11 531 531 HOH HOH . F 5 HOH B 12 534 534 HOH HOH . F 5 HOH B 13 535 535 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -27.579 _atom_site.Cartn_y -23.604 _atom_site.Cartn_z -24.779 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 171 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #