data_3KUF # _model_server_result.job_id nfx5hQUBw_JfrhscLdT0Sw _model_server_result.datetime_utc '2024-11-22 23:39:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kuf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":132}' # _entry.id 3KUF # _exptl.entry_id 3KUF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KUF _cell.length_a 73.102 _cell.length_b 73.102 _cell.length_c 94.412 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KUF _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 83 n n S1 HS1 DTT sing 84 n n C1 C2 DTT sing 85 n n C1 H11 DTT sing 86 n n C1 H12 DTT sing 87 n n C2 O2 DTT sing 88 n n C2 C3 DTT sing 89 n n C2 H2 DTT sing 90 n n O2 HO2 DTT sing 91 n n C3 O3 DTT sing 92 n n C3 C4 DTT sing 93 n n C3 H3 DTT sing 94 n n O3 HO3 DTT sing 95 n n C4 S4 DTT sing 96 n n C4 H41 DTT sing 97 n n C4 H42 DTT sing 98 n n S4 HS2 DTT sing 99 n n # _atom_sites.entry_id 3KUF _atom_sites.fract_transf_matrix[1][1] 0.01368 _atom_sites.fract_transf_matrix[1][2] 0.007898 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015796 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DTT A 1 132 1 DTT DTT . C 3 GOL A 1 133 2 GOL GOL . D 3 GOL A 1 134 3 GOL GOL . E 3 GOL A 1 135 4 GOL GOL . F 3 GOL A 1 136 5 GOL GOL . G 3 GOL A 1 137 6 GOL GOL . H 4 HOH A 1 138 1 HOH HOH . H 4 HOH A 2 139 2 HOH HOH . H 4 HOH A 3 140 3 HOH HOH . H 4 HOH A 4 141 4 HOH HOH . H 4 HOH A 5 142 7 HOH HOH . H 4 HOH A 6 143 8 HOH HOH . H 4 HOH A 7 144 9 HOH HOH . H 4 HOH A 8 145 10 HOH HOH . H 4 HOH A 9 146 11 HOH HOH . H 4 HOH A 10 147 13 HOH HOH . H 4 HOH A 11 148 18 HOH HOH . H 4 HOH A 12 149 21 HOH HOH . H 4 HOH A 13 150 23 HOH HOH . H 4 HOH A 14 151 25 HOH HOH . H 4 HOH A 15 152 26 HOH HOH . H 4 HOH A 16 153 27 HOH HOH . H 4 HOH A 17 154 29 HOH HOH . H 4 HOH A 18 155 30 HOH HOH . H 4 HOH A 19 156 31 HOH HOH . H 4 HOH A 20 157 32 HOH HOH . H 4 HOH A 21 158 33 HOH HOH . H 4 HOH A 22 159 34 HOH HOH . H 4 HOH A 23 160 35 HOH HOH . H 4 HOH A 24 161 36 HOH HOH . H 4 HOH A 25 162 39 HOH HOH . H 4 HOH A 26 163 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . B 2 21.289 29.554 -22.845 1 133.18 ? S1 DTT 132 A 1 HETATM 2 C C1 DTT . . . B 2 19.837 29.223 -21.779 1 132.49 ? C1 DTT 132 A 1 HETATM 3 C C2 DTT . . . B 2 19.721 27.747 -21.396 1 133.26 ? C2 DTT 132 A 1 HETATM 4 O O2 DTT . . . B 2 19.16 27.013 -22.488 1 133.32 ? O2 DTT 132 A 1 HETATM 5 C C3 DTT . . . B 2 18.852 27.559 -20.15 1 133.49 ? C3 DTT 132 A 1 HETATM 6 O O3 DTT . . . B 2 18.322 26.23 -20.146 1 135.06 ? O3 DTT 132 A 1 HETATM 7 C C4 DTT . . . B 2 19.661 27.794 -18.87 1 132.46 ? C4 DTT 132 A 1 HETATM 8 S S4 DTT . . . B 2 18.771 27.317 -17.341 1 129.83 ? S4 DTT 132 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #