data_3KV1
#
_model_server_result.job_id            A0bzMwo4RWFpezBGvmWQlA 
_model_server_result.datetime_utc      '2024-11-05 00:59:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kv1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":271}' 
#
_entry.id    3KV1 
#
_exptl.entry_id    3KV1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.15 
_cell.angle_gamma         90 
_cell.entry_id            3KV1 
_cell.length_a            129.382 
_cell.length_b            43.474 
_cell.length_c            47.536 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KV1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 117.761288 0 46.093713 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 57 A MSE 54 1_555 A N ALA 58 A ALA 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? 
covale ? covale2 A C MSE 134 A MSE 131 1_555 A N GLU 135 A GLU 132 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 A C MSE 134 A MSE 131 1_555 A N GLU 135 A GLU 132 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 A C MSE 159 A MSE 156 1_555 A N ASP 160 A ASP 157 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C MSE 159 A MSE 156 1_555 A N ASP 160 A ASP 157 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 A C MSE 165 A MSE 162 1_555 A N VAL 166 A VAL 163 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 A C MSE 165 A MSE 162 1_555 A N VAL 166 A VAL 163 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale8 A C MSE 206 A MSE 203 1_555 A N ARG 207 A ARG 204 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.325 ? 
covale ? covale9 A C MSE 206 A MSE 203 1_555 A N ARG 207 A ARG 204 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.326 ? 
covale ? covale10 A C MSE 215 A MSE 212 1_555 A N GLU 216 A GLU 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale11 A C MSE 227 A MSE 224 1_555 A N ALA 228 A ALA 225 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale12 A C MSE 227 A MSE 224 1_555 A N ALA 228 A ALA 225 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale13 A C MSE 238 A MSE 235 1_555 A N GLY 239 A GLY 236 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale14 A C MSE 238 A MSE 235 1_555 A N GLY 239 A GLY 236 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale15 A C MSE 257 A MSE 254 1_555 A N ALA 258 A ALA 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
_atom_sites.entry_id                     3KV1 
_atom_sites.fract_transf_matrix[1][1]    0.007729 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001949 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023002 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021695 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 271 271 GOL GOL . 
C 2 GOL A 1 282 282 GOL GOL . 
D 2 GOL A 1 283 283 GOL GOL . 
E 2 GOL A 1 284 284 GOL GOL . 
F 2 GOL A 1 285 285 GOL GOL . 
G 3 HOH A 1 265 1 HOH HOH . 
G 3 HOH A 2 266 2 HOH HOH . 
G 3 HOH A 3 267 3 HOH HOH . 
G 3 HOH A 4 268 4 HOH HOH . 
G 3 HOH A 5 269 5 HOH HOH . 
G 3 HOH A 6 270 6 HOH HOH . 
G 3 HOH A 7 272 7 HOH HOH . 
G 3 HOH A 8 273 8 HOH HOH . 
G 3 HOH A 9 274 9 HOH HOH . 
G 3 HOH A 10 275 10 HOH HOH . 
G 3 HOH A 11 276 11 HOH HOH . 
G 3 HOH A 12 277 12 HOH HOH . 
G 3 HOH A 13 278 13 HOH HOH . 
G 3 HOH A 14 279 14 HOH HOH . 
G 3 HOH A 15 280 15 HOH HOH . 
G 3 HOH A 16 281 16 HOH HOH . 
G 3 HOH A 17 286 17 HOH HOH . 
G 3 HOH A 18 287 18 HOH HOH . 
G 3 HOH A 19 288 19 HOH HOH . 
G 3 HOH A 20 289 20 HOH HOH . 
G 3 HOH A 21 290 21 HOH HOH . 
G 3 HOH A 22 291 22 HOH HOH . 
G 3 HOH A 23 292 23 HOH HOH . 
G 3 HOH A 24 293 24 HOH HOH . 
G 3 HOH A 25 294 25 HOH HOH . 
G 3 HOH A 26 295 26 HOH HOH . 
G 3 HOH A 27 296 27 HOH HOH . 
G 3 HOH A 28 297 28 HOH HOH . 
G 3 HOH A 29 298 29 HOH HOH . 
G 3 HOH A 30 299 30 HOH HOH . 
G 3 HOH A 31 300 31 HOH HOH . 
G 3 HOH A 32 301 32 HOH HOH . 
G 3 HOH A 33 302 33 HOH HOH . 
G 3 HOH A 34 303 34 HOH HOH . 
G 3 HOH A 35 304 35 HOH HOH . 
G 3 HOH A 36 305 36 HOH HOH . 
G 3 HOH A 37 306 37 HOH HOH . 
G 3 HOH A 38 307 38 HOH HOH . 
G 3 HOH A 39 308 39 HOH HOH . 
G 3 HOH A 40 309 40 HOH HOH . 
G 3 HOH A 41 310 41 HOH HOH . 
G 3 HOH A 42 311 42 HOH HOH . 
G 3 HOH A 43 312 43 HOH HOH . 
G 3 HOH A 44 313 44 HOH HOH . 
G 3 HOH A 45 314 45 HOH HOH . 
G 3 HOH A 46 315 46 HOH HOH . 
G 3 HOH A 47 316 47 HOH HOH . 
G 3 HOH A 48 317 48 HOH HOH . 
G 3 HOH A 49 318 49 HOH HOH . 
G 3 HOH A 50 319 50 HOH HOH . 
G 3 HOH A 51 320 51 HOH HOH . 
G 3 HOH A 52 321 52 HOH HOH . 
G 3 HOH A 53 322 53 HOH HOH . 
G 3 HOH A 54 323 54 HOH HOH . 
G 3 HOH A 55 324 55 HOH HOH . 
G 3 HOH A 56 325 56 HOH HOH . 
G 3 HOH A 57 326 57 HOH HOH . 
G 3 HOH A 58 327 58 HOH HOH . 
G 3 HOH A 59 328 59 HOH HOH . 
G 3 HOH A 60 329 60 HOH HOH . 
G 3 HOH A 61 330 61 HOH HOH . 
G 3 HOH A 62 331 62 HOH HOH . 
G 3 HOH A 63 332 63 HOH HOH . 
G 3 HOH A 64 333 64 HOH HOH . 
G 3 HOH A 65 334 65 HOH HOH . 
G 3 HOH A 66 335 66 HOH HOH . 
G 3 HOH A 67 336 67 HOH HOH . 
G 3 HOH A 68 337 68 HOH HOH . 
G 3 HOH A 69 338 69 HOH HOH . 
G 3 HOH A 70 339 70 HOH HOH . 
G 3 HOH A 71 340 71 HOH HOH . 
G 3 HOH A 72 341 72 HOH HOH . 
G 3 HOH A 73 342 73 HOH HOH . 
G 3 HOH A 74 343 74 HOH HOH . 
G 3 HOH A 75 344 75 HOH HOH . 
G 3 HOH A 76 345 76 HOH HOH . 
G 3 HOH A 77 346 77 HOH HOH . 
G 3 HOH A 78 347 78 HOH HOH . 
G 3 HOH A 79 348 79 HOH HOH . 
G 3 HOH A 80 349 80 HOH HOH . 
G 3 HOH A 81 350 81 HOH HOH . 
G 3 HOH A 82 351 82 HOH HOH . 
G 3 HOH A 83 352 83 HOH HOH . 
G 3 HOH A 84 353 84 HOH HOH . 
G 3 HOH A 85 354 85 HOH HOH . 
G 3 HOH A 86 355 86 HOH HOH . 
G 3 HOH A 87 356 87 HOH HOH . 
G 3 HOH A 88 357 88 HOH HOH . 
G 3 HOH A 89 358 89 HOH HOH . 
G 3 HOH A 90 359 90 HOH HOH . 
G 3 HOH A 91 360 91 HOH HOH . 
G 3 HOH A 92 361 92 HOH HOH . 
G 3 HOH A 93 362 93 HOH HOH . 
G 3 HOH A 94 363 94 HOH HOH . 
G 3 HOH A 95 364 95 HOH HOH . 
G 3 HOH A 96 365 96 HOH HOH . 
G 3 HOH A 97 366 97 HOH HOH . 
G 3 HOH A 98 367 98 HOH HOH . 
G 3 HOH A 99 368 99 HOH HOH . 
G 3 HOH A 100 369 100 HOH HOH . 
G 3 HOH A 101 370 101 HOH HOH . 
G 3 HOH A 102 371 102 HOH HOH . 
G 3 HOH A 103 372 103 HOH HOH . 
G 3 HOH A 104 373 104 HOH HOH . 
G 3 HOH A 105 374 105 HOH HOH . 
G 3 HOH A 106 375 106 HOH HOH . 
G 3 HOH A 107 376 107 HOH HOH . 
G 3 HOH A 108 377 108 HOH HOH . 
G 3 HOH A 109 378 109 HOH HOH . 
G 3 HOH A 110 379 110 HOH HOH . 
G 3 HOH A 111 380 111 HOH HOH . 
G 3 HOH A 112 381 112 HOH HOH . 
G 3 HOH A 113 382 113 HOH HOH . 
G 3 HOH A 114 383 114 HOH HOH . 
G 3 HOH A 115 384 115 HOH HOH . 
G 3 HOH A 116 385 116 HOH HOH . 
G 3 HOH A 117 386 117 HOH HOH . 
G 3 HOH A 118 387 118 HOH HOH . 
G 3 HOH A 119 388 119 HOH HOH . 
G 3 HOH A 120 389 120 HOH HOH . 
G 3 HOH A 121 390 121 HOH HOH . 
G 3 HOH A 122 391 122 HOH HOH . 
G 3 HOH A 123 392 123 HOH HOH . 
G 3 HOH A 124 393 124 HOH HOH . 
G 3 HOH A 125 394 125 HOH HOH . 
G 3 HOH A 126 395 126 HOH HOH . 
G 3 HOH A 127 396 127 HOH HOH . 
G 3 HOH A 128 397 128 HOH HOH . 
G 3 HOH A 129 398 129 HOH HOH . 
G 3 HOH A 130 399 130 HOH HOH . 
G 3 HOH A 131 400 131 HOH HOH . 
G 3 HOH A 132 401 132 HOH HOH . 
G 3 HOH A 133 402 133 HOH HOH . 
G 3 HOH A 134 403 134 HOH HOH . 
G 3 HOH A 135 404 135 HOH HOH . 
G 3 HOH A 136 405 136 HOH HOH . 
G 3 HOH A 137 406 137 HOH HOH . 
G 3 HOH A 138 407 138 HOH HOH . 
G 3 HOH A 139 408 139 HOH HOH . 
G 3 HOH A 140 409 140 HOH HOH . 
G 3 HOH A 141 410 141 HOH HOH . 
G 3 HOH A 142 411 142 HOH HOH . 
G 3 HOH A 143 412 143 HOH HOH . 
G 3 HOH A 144 413 144 HOH HOH . 
G 3 HOH A 145 414 145 HOH HOH . 
G 3 HOH A 146 415 146 HOH HOH . 
G 3 HOH A 147 416 147 HOH HOH . 
G 3 HOH A 148 417 148 HOH HOH . 
G 3 HOH A 149 418 149 HOH HOH . 
G 3 HOH A 150 419 150 HOH HOH . 
G 3 HOH A 151 420 151 HOH HOH . 
G 3 HOH A 152 421 152 HOH HOH . 
G 3 HOH A 153 422 153 HOH HOH . 
G 3 HOH A 154 423 154 HOH HOH . 
G 3 HOH A 155 424 155 HOH HOH . 
G 3 HOH A 156 425 156 HOH HOH . 
G 3 HOH A 157 426 157 HOH HOH . 
G 3 HOH A 158 427 158 HOH HOH . 
G 3 HOH A 159 428 159 HOH HOH . 
G 3 HOH A 160 429 160 HOH HOH . 
G 3 HOH A 161 430 161 HOH HOH . 
G 3 HOH A 162 431 162 HOH HOH . 
G 3 HOH A 163 432 163 HOH HOH . 
G 3 HOH A 164 433 164 HOH HOH . 
G 3 HOH A 165 434 165 HOH HOH . 
G 3 HOH A 166 435 166 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 44.916 33.979 12.557 1 40.1 ? C1 GOL 271 A 1 
HETATM 2 O O1 GOL . . . B 2 44.98 35.387 12.412 1 45.05 ? O1 GOL 271 A 1 
HETATM 3 C C2 GOL . . . B 2 44.586 33.396 11.185 1 42.57 ? C2 GOL 271 A 1 
HETATM 4 O O2 GOL . . . B 2 43.751 34.301 10.473 1 47.31 ? O2 GOL 271 A 1 
HETATM 5 C C3 GOL . . . B 2 45.909 33.259 10.443 1 34.84 ? C3 GOL 271 A 1 
HETATM 6 O O3 GOL . . . B 2 45.71 33.073 9.06 1 28.46 ? O3 GOL 271 A 1 
#
_model_server_stats.io_time_ms              38 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#