data_3KV4 # _model_server_result.job_id w1Y-n5m2akr1GiwwfKtkAw _model_server_result.datetime_utc '2024-12-02 20:58:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":460}' # _entry.id 3KV4 # _exptl.entry_id 3KV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KV4 _cell.length_a 73.5 _cell.length_b 73.5 _cell.length_c 210.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C THR 3 B THR 3 1_555 B N M3L 4 B M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B C M3L 4 B M3L 4 1_555 B N GLN 5 B GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 B C ARG 8 B ARG 8 1_555 B N MLY 9 B MLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C MLY 9 B MLY 9 1_555 B N SER 10 B SER 10 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? covale ? covale5 B C MLY 9 B MLY 9 1_555 B N SER 10 B SER 10 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A SG CYS 8 A CYS 8 1_555 C ZN ZN . A ZN 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 A SG CYS 10 A CYS 10 1_555 C ZN ZN . A ZN 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc3 A SG CYS 23 A CYS 23 1_555 D ZN ZN . A ZN 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc4 A SG CYS 26 A CYS 26 1_555 D ZN ZN . A ZN 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc5 A ND1 HIS 31 A HIS 31 1_555 C ZN ZN . A ZN 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc6 A SG CYS 34 A CYS 34 1_555 C ZN ZN . A ZN 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc7 A SG CYS 50 A CYS 50 1_555 D ZN ZN . A ZN 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc8 A SG CYS 53 A CYS 53 1_555 D ZN ZN . A ZN 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc9 A NE2 HIS 247 A HIS 247 1_555 E FE FE2 . A FE2 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc10 A OD2 ASP 249 A ASP 249 1_555 E FE FE2 . A FE2 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc11 A NE2 HIS 319 A HIS 319 1_555 E FE FE2 . A FE2 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc12 E FE FE2 . A FE2 450 1_555 U O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc13 E FE FE2 . A FE2 450 1_555 T O2 OGA . A OGA 5798 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc14 E FE FE2 . A FE2 450 1_555 T O2' OGA . A OGA 5798 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3KV4 _atom_sites.fract_transf_matrix[1][1] 0.013605 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013605 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004744 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 448 448 ZN ZN . D 3 ZN A 1 449 449 ZN ZN . E 4 FE2 A 1 450 450 FE2 FE2 . F 5 NI A 1 451 451 NI NI . G 6 EDO A 1 452 452 EDO EDO . H 6 EDO A 1 453 453 EDO EDO . I 6 EDO A 1 454 454 EDO EDO . J 6 EDO A 1 455 455 EDO EDO . K 6 EDO A 1 456 456 EDO EDO . L 6 EDO A 1 457 457 EDO EDO . M 6 EDO A 1 458 458 EDO EDO . N 6 EDO A 1 459 459 EDO EDO . O 6 EDO A 1 460 460 EDO EDO . P 6 EDO A 1 461 461 EDO EDO . Q 6 EDO A 1 462 462 EDO EDO . R 6 EDO A 1 463 463 EDO EDO . S 6 EDO A 1 464 464 EDO EDO . T 7 OGA A 1 5798 5798 OGA OGA . U 8 HOH A 1 465 465 HOH HOH . U 8 HOH A 2 466 466 HOH HOH . U 8 HOH A 3 467 467 HOH HOH . U 8 HOH A 4 468 468 HOH HOH . U 8 HOH A 5 469 469 HOH HOH . U 8 HOH A 6 470 470 HOH HOH . U 8 HOH A 7 471 471 HOH HOH . U 8 HOH A 8 472 472 HOH HOH . U 8 HOH A 9 473 473 HOH HOH . U 8 HOH A 10 474 474 HOH HOH . U 8 HOH A 11 475 475 HOH HOH . U 8 HOH A 12 476 476 HOH HOH . U 8 HOH A 13 477 477 HOH HOH . U 8 HOH A 14 478 478 HOH HOH . U 8 HOH A 15 479 479 HOH HOH . U 8 HOH A 16 480 480 HOH HOH . U 8 HOH A 17 481 481 HOH HOH . U 8 HOH A 18 482 482 HOH HOH . U 8 HOH A 19 483 483 HOH HOH . U 8 HOH A 20 484 484 HOH HOH . U 8 HOH A 21 485 485 HOH HOH . U 8 HOH A 22 486 486 HOH HOH . U 8 HOH A 23 487 487 HOH HOH . U 8 HOH A 24 488 488 HOH HOH . U 8 HOH A 25 489 489 HOH HOH . U 8 HOH A 26 490 490 HOH HOH . U 8 HOH A 27 491 491 HOH HOH . U 8 HOH A 28 492 492 HOH HOH . U 8 HOH A 29 493 493 HOH HOH . U 8 HOH A 30 494 494 HOH HOH . U 8 HOH A 31 495 495 HOH HOH . U 8 HOH A 32 496 496 HOH HOH . U 8 HOH A 33 497 497 HOH HOH . U 8 HOH A 34 498 498 HOH HOH . U 8 HOH A 35 499 499 HOH HOH . U 8 HOH A 36 500 500 HOH HOH . U 8 HOH A 37 501 501 HOH HOH . U 8 HOH A 38 502 502 HOH HOH . U 8 HOH A 39 503 503 HOH HOH . U 8 HOH A 40 504 504 HOH HOH . U 8 HOH A 41 505 505 HOH HOH . U 8 HOH A 42 506 506 HOH HOH . U 8 HOH A 43 507 507 HOH HOH . U 8 HOH A 44 508 508 HOH HOH . U 8 HOH A 45 509 509 HOH HOH . U 8 HOH A 46 510 510 HOH HOH . U 8 HOH A 47 511 511 HOH HOH . U 8 HOH A 48 512 512 HOH HOH . U 8 HOH A 49 513 513 HOH HOH . U 8 HOH A 50 514 514 HOH HOH . U 8 HOH A 51 515 515 HOH HOH . U 8 HOH A 52 516 516 HOH HOH . U 8 HOH A 53 517 517 HOH HOH . U 8 HOH A 54 518 518 HOH HOH . U 8 HOH A 55 519 519 HOH HOH . U 8 HOH A 56 520 520 HOH HOH . U 8 HOH A 57 521 521 HOH HOH . U 8 HOH A 58 522 522 HOH HOH . U 8 HOH A 59 523 523 HOH HOH . U 8 HOH A 60 524 524 HOH HOH . U 8 HOH A 61 525 525 HOH HOH . U 8 HOH A 62 526 526 HOH HOH . U 8 HOH A 63 527 527 HOH HOH . U 8 HOH A 64 528 528 HOH HOH . U 8 HOH A 65 529 529 HOH HOH . U 8 HOH A 66 530 530 HOH HOH . U 8 HOH A 67 531 531 HOH HOH . U 8 HOH A 68 532 532 HOH HOH . U 8 HOH A 69 533 533 HOH HOH . U 8 HOH A 70 534 534 HOH HOH . U 8 HOH A 71 535 535 HOH HOH . U 8 HOH A 72 536 536 HOH HOH . U 8 HOH A 73 537 537 HOH HOH . U 8 HOH A 74 538 538 HOH HOH . U 8 HOH A 75 539 539 HOH HOH . U 8 HOH A 76 540 540 HOH HOH . U 8 HOH A 77 541 541 HOH HOH . U 8 HOH A 78 542 542 HOH HOH . U 8 HOH A 79 543 543 HOH HOH . U 8 HOH A 80 544 544 HOH HOH . U 8 HOH A 81 545 545 HOH HOH . U 8 HOH A 82 546 546 HOH HOH . U 8 HOH A 83 547 547 HOH HOH . U 8 HOH A 84 548 548 HOH HOH . U 8 HOH A 85 549 549 HOH HOH . U 8 HOH A 86 550 550 HOH HOH . U 8 HOH A 87 551 551 HOH HOH . U 8 HOH A 88 552 552 HOH HOH . U 8 HOH A 89 553 553 HOH HOH . U 8 HOH A 90 554 554 HOH HOH . U 8 HOH A 91 555 555 HOH HOH . U 8 HOH A 92 556 556 HOH HOH . U 8 HOH A 93 557 557 HOH HOH . U 8 HOH A 94 558 558 HOH HOH . U 8 HOH A 95 559 559 HOH HOH . U 8 HOH A 96 560 560 HOH HOH . U 8 HOH A 97 561 561 HOH HOH . U 8 HOH A 98 562 562 HOH HOH . U 8 HOH A 99 563 563 HOH HOH . U 8 HOH A 100 564 564 HOH HOH . U 8 HOH A 101 565 565 HOH HOH . U 8 HOH A 102 566 566 HOH HOH . U 8 HOH A 103 567 567 HOH HOH . U 8 HOH A 104 568 568 HOH HOH . U 8 HOH A 105 569 569 HOH HOH . U 8 HOH A 106 570 570 HOH HOH . U 8 HOH A 107 571 571 HOH HOH . U 8 HOH A 108 572 572 HOH HOH . U 8 HOH A 109 573 573 HOH HOH . U 8 HOH A 110 574 574 HOH HOH . U 8 HOH A 111 575 575 HOH HOH . U 8 HOH A 112 576 576 HOH HOH . U 8 HOH A 113 577 577 HOH HOH . U 8 HOH A 114 578 578 HOH HOH . U 8 HOH A 115 579 579 HOH HOH . U 8 HOH A 116 580 580 HOH HOH . U 8 HOH A 117 581 581 HOH HOH . U 8 HOH A 118 582 582 HOH HOH . U 8 HOH A 119 583 583 HOH HOH . U 8 HOH A 120 584 584 HOH HOH . U 8 HOH A 121 585 585 HOH HOH . U 8 HOH A 122 586 586 HOH HOH . U 8 HOH A 123 587 587 HOH HOH . U 8 HOH A 124 588 588 HOH HOH . U 8 HOH A 125 589 589 HOH HOH . U 8 HOH A 126 590 590 HOH HOH . U 8 HOH A 127 591 591 HOH HOH . U 8 HOH A 128 592 592 HOH HOH . U 8 HOH A 129 593 593 HOH HOH . U 8 HOH A 130 594 594 HOH HOH . U 8 HOH A 131 595 595 HOH HOH . U 8 HOH A 132 596 596 HOH HOH . U 8 HOH A 133 597 597 HOH HOH . U 8 HOH A 134 598 598 HOH HOH . U 8 HOH A 135 599 599 HOH HOH . U 8 HOH A 136 600 600 HOH HOH . U 8 HOH A 137 601 601 HOH HOH . U 8 HOH A 138 602 602 HOH HOH . U 8 HOH A 139 603 603 HOH HOH . U 8 HOH A 140 604 604 HOH HOH . U 8 HOH A 141 605 605 HOH HOH . U 8 HOH A 142 606 606 HOH HOH . U 8 HOH A 143 607 607 HOH HOH . U 8 HOH A 144 608 608 HOH HOH . U 8 HOH A 145 609 609 HOH HOH . U 8 HOH A 146 610 610 HOH HOH . U 8 HOH A 147 611 611 HOH HOH . U 8 HOH A 148 612 612 HOH HOH . U 8 HOH A 149 613 613 HOH HOH . U 8 HOH A 150 614 614 HOH HOH . U 8 HOH A 151 615 615 HOH HOH . U 8 HOH A 152 616 616 HOH HOH . U 8 HOH A 153 617 617 HOH HOH . U 8 HOH A 154 618 618 HOH HOH . U 8 HOH A 155 619 619 HOH HOH . U 8 HOH A 156 620 620 HOH HOH . U 8 HOH A 157 621 621 HOH HOH . U 8 HOH A 158 622 622 HOH HOH . U 8 HOH A 159 623 623 HOH HOH . U 8 HOH A 160 624 624 HOH HOH . U 8 HOH A 161 625 625 HOH HOH . U 8 HOH A 162 626 626 HOH HOH . U 8 HOH A 163 627 627 HOH HOH . U 8 HOH A 164 628 628 HOH HOH . U 8 HOH A 165 629 629 HOH HOH . U 8 HOH A 166 630 630 HOH HOH . U 8 HOH A 167 631 631 HOH HOH . U 8 HOH A 168 633 633 HOH HOH . U 8 HOH A 169 634 634 HOH HOH . U 8 HOH A 170 635 635 HOH HOH . U 8 HOH A 171 636 636 HOH HOH . U 8 HOH A 172 637 637 HOH HOH . U 8 HOH A 173 638 638 HOH HOH . U 8 HOH A 174 639 639 HOH HOH . U 8 HOH A 175 640 640 HOH HOH . U 8 HOH A 176 641 641 HOH HOH . U 8 HOH A 177 642 642 HOH HOH . U 8 HOH A 178 643 643 HOH HOH . U 8 HOH A 179 644 644 HOH HOH . U 8 HOH A 180 645 645 HOH HOH . U 8 HOH A 181 646 646 HOH HOH . U 8 HOH A 182 647 647 HOH HOH . U 8 HOH A 183 648 648 HOH HOH . U 8 HOH A 184 649 649 HOH HOH . U 8 HOH A 185 650 650 HOH HOH . U 8 HOH A 186 651 651 HOH HOH . U 8 HOH A 187 652 652 HOH HOH . U 8 HOH A 188 653 653 HOH HOH . U 8 HOH A 189 654 654 HOH HOH . U 8 HOH A 190 655 655 HOH HOH . U 8 HOH A 191 656 656 HOH HOH . U 8 HOH A 192 657 657 HOH HOH . U 8 HOH A 193 658 658 HOH HOH . V 8 HOH B 1 659 659 HOH HOH . V 8 HOH B 2 660 660 HOH HOH . V 8 HOH B 3 661 661 HOH HOH . V 8 HOH B 4 662 662 HOH HOH . V 8 HOH B 5 663 663 HOH HOH . V 8 HOH B 6 664 664 HOH HOH . V 8 HOH B 7 665 665 HOH HOH . V 8 HOH B 8 666 666 HOH HOH . V 8 HOH B 9 667 667 HOH HOH . V 8 HOH B 10 668 668 HOH HOH . V 8 HOH B 11 669 669 HOH HOH . V 8 HOH B 12 670 670 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . O 6 -57.208 -8.903 -0.059 1 27.32 ? C1 EDO 460 A 1 HETATM 2 O O1 EDO . . . O 6 -57.74 -10.168 -0.469 1 30.17 ? O1 EDO 460 A 1 HETATM 3 C C2 EDO . . . O 6 -57.919 -7.79 -0.823 1 29.51 ? C2 EDO 460 A 1 HETATM 4 O O2 EDO . . . O 6 -58.513 -6.868 0.1 1 30.28 ? O2 EDO 460 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #