data_3KV6 # _model_server_result.job_id X7-A8NDhcdzbAs77rKAEnQ _model_server_result.datetime_utc '2024-12-02 18:37:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kv6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":490}' # _entry.id 3KV6 # _exptl.entry_id 3KV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KV6 _cell.length_a 63.4 _cell.length_b 125.2 _cell.length_c 206 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 A,C,D,E,F,G,M 3 1 B,H,I,J,K,L,N 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_665 x+1,y+1,z 1 0 0 0 1 0 0 0 1 63.4 125.2 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 40 A CYS 40 1_555 D ZN ZN . A ZN 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc2 A SG CYS 42 A CYS 42 1_555 D ZN ZN . A ZN 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc3 A SG CYS 55 A CYS 55 1_555 C ZN ZN . A ZN 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc4 A SG CYS 58 A CYS 58 1_555 C ZN ZN . A ZN 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc5 A ND1 HIS 63 A HIS 63 1_555 D ZN ZN . A ZN 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? metalc ? metalc6 A SG CYS 66 A CYS 66 1_555 D ZN ZN . A ZN 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc7 A SG CYS 82 A CYS 82 1_555 C ZN ZN . A ZN 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc8 A SG CYS 85 A CYS 85 1_555 C ZN ZN . A ZN 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc9 A NE2 HIS 282 A HIS 282 1_555 E FE FE2 . A FE2 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc10 A OD2 ASP 284 A ASP 284 1_555 E FE FE2 . A FE2 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc11 A NE2 HIS 354 A HIS 354 1_555 E FE FE2 . A FE2 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc12 E FE FE2 . A FE2 491 1_555 G O2 AKG . A AKG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc13 B SG CYS 40 D CYS 40 1_555 I ZN ZN . D ZN 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc14 B SG CYS 42 D CYS 42 1_555 I ZN ZN . D ZN 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc15 B SG CYS 55 D CYS 55 1_555 H ZN ZN . D ZN 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc16 B SG CYS 58 D CYS 58 1_555 H ZN ZN . D ZN 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc17 B ND1 HIS 63 D HIS 63 1_555 I ZN ZN . D ZN 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc18 B SG CYS 66 D CYS 66 1_555 I ZN ZN . D ZN 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc19 B SG CYS 82 D CYS 82 1_555 H ZN ZN . D ZN 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc20 B SG CYS 85 D CYS 85 1_555 H ZN ZN . D ZN 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc21 B NE2 HIS 282 D HIS 282 1_555 J FE FE2 . D FE2 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc22 B OD1 ASP 284 D ASP 284 1_555 J FE FE2 . D FE2 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc23 B NE2 HIS 354 D HIS 354 1_555 J FE FE2 . D FE2 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc24 J FE FE2 . D FE2 491 1_555 L O2 AKG . D AKG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc25 J FE FE2 . D FE2 491 1_555 L O5 AKG . D AKG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3KV6 _atom_sites.fract_transf_matrix[1][1] 0.015773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004854 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 489 489 ZN ZN . D 2 ZN A 1 490 490 ZN ZN . E 3 FE2 A 1 491 491 FE2 FE2 . F 4 OXY A 1 492 492 OXY OXY . G 5 AKG A 1 702 702 AKG AKG . H 2 ZN D 1 489 489 ZN ZN . I 2 ZN D 1 490 490 ZN ZN . J 3 FE2 D 1 491 491 FE2 FE2 . K 4 OXY D 1 492 492 OXY OXY . L 5 AKG D 1 701 701 AKG AKG . M 6 HOH A 1 493 493 HOH HOH . M 6 HOH A 2 494 494 HOH HOH . M 6 HOH A 3 495 495 HOH HOH . M 6 HOH A 4 496 496 HOH HOH . M 6 HOH A 5 497 497 HOH HOH . M 6 HOH A 6 498 498 HOH HOH . M 6 HOH A 7 499 499 HOH HOH . M 6 HOH A 8 500 500 HOH HOH . M 6 HOH A 9 501 501 HOH HOH . M 6 HOH A 10 502 502 HOH HOH . M 6 HOH A 11 503 503 HOH HOH . M 6 HOH A 12 504 504 HOH HOH . M 6 HOH A 13 505 505 HOH HOH . M 6 HOH A 14 506 506 HOH HOH . M 6 HOH A 15 507 507 HOH HOH . M 6 HOH A 16 508 508 HOH HOH . M 6 HOH A 17 509 509 HOH HOH . M 6 HOH A 18 510 510 HOH HOH . M 6 HOH A 19 511 511 HOH HOH . M 6 HOH A 20 512 512 HOH HOH . M 6 HOH A 21 513 513 HOH HOH . M 6 HOH A 22 514 514 HOH HOH . M 6 HOH A 23 515 515 HOH HOH . M 6 HOH A 24 516 516 HOH HOH . M 6 HOH A 25 517 517 HOH HOH . M 6 HOH A 26 518 518 HOH HOH . M 6 HOH A 27 519 519 HOH HOH . M 6 HOH A 28 520 520 HOH HOH . M 6 HOH A 29 521 521 HOH HOH . M 6 HOH A 30 522 522 HOH HOH . M 6 HOH A 31 523 523 HOH HOH . M 6 HOH A 32 524 524 HOH HOH . M 6 HOH A 33 525 525 HOH HOH . M 6 HOH A 34 526 526 HOH HOH . M 6 HOH A 35 527 527 HOH HOH . M 6 HOH A 36 528 528 HOH HOH . M 6 HOH A 37 529 529 HOH HOH . M 6 HOH A 38 530 530 HOH HOH . M 6 HOH A 39 531 531 HOH HOH . M 6 HOH A 40 532 532 HOH HOH . M 6 HOH A 41 535 535 HOH HOH . M 6 HOH A 42 536 536 HOH HOH . M 6 HOH A 43 537 537 HOH HOH . M 6 HOH A 44 538 538 HOH HOH . M 6 HOH A 45 540 540 HOH HOH . M 6 HOH A 46 541 541 HOH HOH . M 6 HOH A 47 542 542 HOH HOH . M 6 HOH A 48 543 543 HOH HOH . M 6 HOH A 49 544 544 HOH HOH . M 6 HOH A 50 545 545 HOH HOH . M 6 HOH A 51 546 546 HOH HOH . M 6 HOH A 52 547 547 HOH HOH . M 6 HOH A 53 548 548 HOH HOH . M 6 HOH A 54 549 549 HOH HOH . M 6 HOH A 55 550 550 HOH HOH . M 6 HOH A 56 551 551 HOH HOH . M 6 HOH A 57 552 552 HOH HOH . M 6 HOH A 58 553 553 HOH HOH . M 6 HOH A 59 554 554 HOH HOH . M 6 HOH A 60 555 555 HOH HOH . M 6 HOH A 61 556 556 HOH HOH . M 6 HOH A 62 557 557 HOH HOH . M 6 HOH A 63 558 558 HOH HOH . M 6 HOH A 64 559 559 HOH HOH . M 6 HOH A 65 560 560 HOH HOH . M 6 HOH A 66 561 561 HOH HOH . M 6 HOH A 67 562 562 HOH HOH . M 6 HOH A 68 564 564 HOH HOH . M 6 HOH A 69 565 565 HOH HOH . M 6 HOH A 70 566 566 HOH HOH . M 6 HOH A 71 567 567 HOH HOH . M 6 HOH A 72 568 568 HOH HOH . M 6 HOH A 73 569 569 HOH HOH . M 6 HOH A 74 570 570 HOH HOH . M 6 HOH A 75 571 571 HOH HOH . M 6 HOH A 76 573 573 HOH HOH . M 6 HOH A 77 574 574 HOH HOH . M 6 HOH A 78 575 575 HOH HOH . M 6 HOH A 79 576 576 HOH HOH . M 6 HOH A 80 577 577 HOH HOH . M 6 HOH A 81 578 578 HOH HOH . M 6 HOH A 82 579 579 HOH HOH . N 6 HOH D 1 493 493 HOH HOH . N 6 HOH D 2 494 494 HOH HOH . N 6 HOH D 3 495 495 HOH HOH . N 6 HOH D 4 496 496 HOH HOH . N 6 HOH D 5 497 497 HOH HOH . N 6 HOH D 6 498 498 HOH HOH . N 6 HOH D 7 499 499 HOH HOH . N 6 HOH D 8 500 500 HOH HOH . N 6 HOH D 9 501 501 HOH HOH . N 6 HOH D 10 502 502 HOH HOH . N 6 HOH D 11 503 503 HOH HOH . N 6 HOH D 12 504 504 HOH HOH . N 6 HOH D 13 505 505 HOH HOH . N 6 HOH D 14 506 506 HOH HOH . N 6 HOH D 15 507 507 HOH HOH . N 6 HOH D 16 508 508 HOH HOH . N 6 HOH D 17 509 509 HOH HOH . N 6 HOH D 18 510 510 HOH HOH . N 6 HOH D 19 511 511 HOH HOH . N 6 HOH D 20 512 512 HOH HOH . N 6 HOH D 21 513 513 HOH HOH . N 6 HOH D 22 514 514 HOH HOH . N 6 HOH D 23 515 515 HOH HOH . N 6 HOH D 24 516 516 HOH HOH . N 6 HOH D 25 517 517 HOH HOH . N 6 HOH D 26 518 518 HOH HOH . N 6 HOH D 27 519 519 HOH HOH . N 6 HOH D 28 520 520 HOH HOH . N 6 HOH D 29 521 521 HOH HOH . N 6 HOH D 30 522 522 HOH HOH . N 6 HOH D 31 523 523 HOH HOH . N 6 HOH D 32 524 524 HOH HOH . N 6 HOH D 33 525 525 HOH HOH . N 6 HOH D 34 526 526 HOH HOH . N 6 HOH D 35 527 527 HOH HOH . N 6 HOH D 36 528 528 HOH HOH . N 6 HOH D 37 529 529 HOH HOH . N 6 HOH D 38 530 530 HOH HOH . N 6 HOH D 39 531 531 HOH HOH . N 6 HOH D 40 532 532 HOH HOH . N 6 HOH D 41 533 533 HOH HOH . N 6 HOH D 42 534 534 HOH HOH . N 6 HOH D 43 535 535 HOH HOH . N 6 HOH D 44 536 536 HOH HOH . N 6 HOH D 45 537 537 HOH HOH . N 6 HOH D 46 538 538 HOH HOH . N 6 HOH D 47 539 539 HOH HOH . N 6 HOH D 48 540 540 HOH HOH . N 6 HOH D 49 541 541 HOH HOH . N 6 HOH D 50 542 542 HOH HOH . N 6 HOH D 51 543 543 HOH HOH . N 6 HOH D 52 544 544 HOH HOH . N 6 HOH D 53 545 545 HOH HOH . N 6 HOH D 54 546 546 HOH HOH . N 6 HOH D 55 547 547 HOH HOH . N 6 HOH D 56 548 548 HOH HOH . N 6 HOH D 57 549 549 HOH HOH . N 6 HOH D 58 550 550 HOH HOH . N 6 HOH D 59 551 551 HOH HOH . N 6 HOH D 60 552 552 HOH HOH . N 6 HOH D 61 553 553 HOH HOH . N 6 HOH D 62 554 554 HOH HOH . N 6 HOH D 63 555 555 HOH HOH . N 6 HOH D 64 556 556 HOH HOH . N 6 HOH D 65 557 557 HOH HOH . N 6 HOH D 66 558 558 HOH HOH . N 6 HOH D 67 559 559 HOH HOH . N 6 HOH D 68 560 560 HOH HOH . N 6 HOH D 69 561 561 HOH HOH . N 6 HOH D 70 562 562 HOH HOH . N 6 HOH D 71 563 563 HOH HOH . N 6 HOH D 72 564 564 HOH HOH . N 6 HOH D 73 565 565 HOH HOH . N 6 HOH D 74 566 566 HOH HOH . N 6 HOH D 75 567 567 HOH HOH . N 6 HOH D 76 568 568 HOH HOH . N 6 HOH D 77 569 569 HOH HOH . N 6 HOH D 78 570 570 HOH HOH . N 6 HOH D 79 571 571 HOH HOH . N 6 HOH D 80 572 572 HOH HOH . N 6 HOH D 81 573 573 HOH HOH . N 6 HOH D 82 574 574 HOH HOH . N 6 HOH D 83 575 575 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 20.792 _atom_site.Cartn_y 54.834 _atom_site.Cartn_z 11.425 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 490 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #