data_3KV9 # _model_server_result.job_id QJ3SmXNdmJ4O7neLFvi0Ow _model_server_result.datetime_utc '2024-12-04 05:54:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kv9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":491}' # _entry.id 3KV9 # _exptl.entry_id 3KV9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 31.999 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXYGEN MOLECULE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KV9 _cell.length_a 77.9 _cell.length_b 77.9 _cell.length_c 289.7 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KV9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 38.95 -67.463379 48.283333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 191 A HIS 282 1_555 B FE FE2 . A FE2 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc2 A OD1 ASP 193 A ASP 284 1_555 B FE FE2 . A FE2 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc3 A NE2 HIS 263 A HIS 354 1_555 B FE FE2 . A FE2 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? # _chem_comp.formula O2 _chem_comp.formula_weight 31.999 _chem_comp.id OXY _chem_comp.mon_nstd_flag . _chem_comp.name 'OXYGEN MOLECULE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 O1 _chem_comp_bond.atom_id_2 O2 _chem_comp_bond.comp_id OXY _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 237 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 3KV9 _atom_sites.fract_transf_matrix[1][1] 0.012837 _atom_sites.fract_transf_matrix[1][2] 0.007411 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 A 1 489 489 FE2 FE2 . C 2 FE2 A 1 490 490 FE2 FE2 . D 3 OXY A 1 491 491 OXY OXY . E 4 HOH A 1 500 500 HOH HOH . E 4 HOH A 2 501 501 HOH HOH . E 4 HOH A 3 502 502 HOH HOH . E 4 HOH A 4 503 503 HOH HOH . E 4 HOH A 5 504 504 HOH HOH . E 4 HOH A 6 505 505 HOH HOH . E 4 HOH A 7 506 506 HOH HOH . E 4 HOH A 8 507 507 HOH HOH . E 4 HOH A 9 508 508 HOH HOH . E 4 HOH A 10 509 509 HOH HOH . E 4 HOH A 11 510 510 HOH HOH . E 4 HOH A 12 511 511 HOH HOH . E 4 HOH A 13 512 512 HOH HOH . E 4 HOH A 14 513 513 HOH HOH . E 4 HOH A 15 514 514 HOH HOH . E 4 HOH A 16 515 515 HOH HOH . E 4 HOH A 17 516 516 HOH HOH . E 4 HOH A 18 517 517 HOH HOH . E 4 HOH A 19 518 518 HOH HOH . E 4 HOH A 20 519 519 HOH HOH . E 4 HOH A 21 520 520 HOH HOH . E 4 HOH A 22 521 521 HOH HOH . E 4 HOH A 23 522 522 HOH HOH . E 4 HOH A 24 523 523 HOH HOH . E 4 HOH A 25 524 524 HOH HOH . E 4 HOH A 26 525 525 HOH HOH . E 4 HOH A 27 526 526 HOH HOH . E 4 HOH A 28 527 527 HOH HOH . E 4 HOH A 29 528 528 HOH HOH . E 4 HOH A 30 529 529 HOH HOH . E 4 HOH A 31 530 530 HOH HOH . E 4 HOH A 32 531 531 HOH HOH . E 4 HOH A 33 532 532 HOH HOH . E 4 HOH A 34 533 533 HOH HOH . E 4 HOH A 35 534 534 HOH HOH . E 4 HOH A 36 535 535 HOH HOH . E 4 HOH A 37 536 536 HOH HOH . E 4 HOH A 38 537 537 HOH HOH . E 4 HOH A 39 538 538 HOH HOH . E 4 HOH A 40 539 539 HOH HOH . E 4 HOH A 41 540 540 HOH HOH . E 4 HOH A 42 541 541 HOH HOH . E 4 HOH A 43 542 542 HOH HOH . E 4 HOH A 44 543 543 HOH HOH . E 4 HOH A 45 544 544 HOH HOH . E 4 HOH A 46 545 545 HOH HOH . E 4 HOH A 47 546 546 HOH HOH . E 4 HOH A 48 547 547 HOH HOH . E 4 HOH A 49 548 548 HOH HOH . E 4 HOH A 50 549 549 HOH HOH . E 4 HOH A 51 550 550 HOH HOH . E 4 HOH A 52 551 551 HOH HOH . E 4 HOH A 53 552 552 HOH HOH . E 4 HOH A 54 553 553 HOH HOH . E 4 HOH A 55 554 554 HOH HOH . E 4 HOH A 56 555 555 HOH HOH . E 4 HOH A 57 556 556 HOH HOH . E 4 HOH A 58 557 557 HOH HOH . E 4 HOH A 59 558 558 HOH HOH . E 4 HOH A 60 559 559 HOH HOH . E 4 HOH A 61 560 560 HOH HOH . E 4 HOH A 62 561 561 HOH HOH . E 4 HOH A 63 562 562 HOH HOH . E 4 HOH A 64 563 563 HOH HOH . E 4 HOH A 65 564 564 HOH HOH . E 4 HOH A 66 565 565 HOH HOH . E 4 HOH A 67 566 566 HOH HOH . E 4 HOH A 68 567 567 HOH HOH . E 4 HOH A 69 568 568 HOH HOH . E 4 HOH A 70 569 569 HOH HOH . E 4 HOH A 71 570 570 HOH HOH . E 4 HOH A 72 571 571 HOH HOH . E 4 HOH A 73 572 572 HOH HOH . E 4 HOH A 74 573 573 HOH HOH . E 4 HOH A 75 574 574 HOH HOH . E 4 HOH A 76 575 575 HOH HOH . E 4 HOH A 77 576 576 HOH HOH . E 4 HOH A 78 577 577 HOH HOH . E 4 HOH A 79 578 578 HOH HOH . E 4 HOH A 80 579 579 HOH HOH . E 4 HOH A 81 580 580 HOH HOH . E 4 HOH A 82 581 581 HOH HOH . E 4 HOH A 83 582 582 HOH HOH . E 4 HOH A 84 583 583 HOH HOH . E 4 HOH A 85 584 584 HOH HOH . E 4 HOH A 86 586 586 HOH HOH . E 4 HOH A 87 587 587 HOH HOH . E 4 HOH A 88 588 588 HOH HOH . E 4 HOH A 89 589 589 HOH HOH . E 4 HOH A 90 590 590 HOH HOH . E 4 HOH A 91 591 591 HOH HOH . E 4 HOH A 92 592 592 HOH HOH . E 4 HOH A 93 593 593 HOH HOH . E 4 HOH A 94 594 594 HOH HOH . E 4 HOH A 95 595 595 HOH HOH . E 4 HOH A 96 596 596 HOH HOH . E 4 HOH A 97 597 597 HOH HOH . E 4 HOH A 98 598 598 HOH HOH . E 4 HOH A 99 599 599 HOH HOH . E 4 HOH A 100 600 600 HOH HOH . E 4 HOH A 101 601 601 HOH HOH . E 4 HOH A 102 602 602 HOH HOH . E 4 HOH A 103 603 603 HOH HOH . E 4 HOH A 104 604 604 HOH HOH . E 4 HOH A 105 605 605 HOH HOH . E 4 HOH A 106 606 606 HOH HOH . E 4 HOH A 107 607 607 HOH HOH . E 4 HOH A 108 608 608 HOH HOH . E 4 HOH A 109 609 609 HOH HOH . E 4 HOH A 110 610 610 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OXY . . . D 3 37.712 -23.165 7.73 1 62 ? O1 OXY 491 A 1 HETATM 2 O O2 OXY . . . D 3 37.475 -23.424 8.677 1 62.6 ? O2 OXY 491 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 2 #