data_3KVA
#
_model_server_result.job_id            82KUoDdlJYXBlojrETPeMQ 
_model_server_result.datetime_utc      '2024-12-04 03:55:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kva 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":491}' 
#
_entry.id    3KVA 
#
_exptl.entry_id    3KVA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              31.999 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'OXYGEN MOLECULE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3KVA 
_cell.length_a            78.1 
_cell.length_b            78.1 
_cell.length_c            290.8 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KVA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -39.05 67.636584 48.466667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 191 A HIS 282 1_555 B FE FE2 . A FE2 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc2 A OD1 ASP 193 A ASP 284 1_555 B FE FE2 . A FE2 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? 
metalc ? metalc3 A NE2 HIS 263 A HIS 354 1_555 B FE FE2 . A FE2 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc4 B FE FE2 . A FE2 489 1_555 E O5 AKG . A AKG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc5 B FE FE2 . A FE2 489 1_555 E O2 AKG . A AKG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
#
_chem_comp.formula           O2 
_chem_comp.formula_weight    31.999 
_chem_comp.id                OXY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'OXYGEN MOLECULE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_chem_comp_bond.atom_id_1             O1 
_chem_comp_bond.atom_id_2             O2 
_chem_comp_bond.comp_id               OXY 
_chem_comp_bond.value_order           doub 
_chem_comp_bond.pdbx_ordinal          252 
_chem_comp_bond.pdbx_stereo_config    n 
_chem_comp_bond.pdbx_aromatic_flag    n 
#
_atom_sites.entry_id                     3KVA 
_atom_sites.fract_transf_matrix[1][1]    0.012804 
_atom_sites.fract_transf_matrix[1][2]    0.007392 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014785 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003439 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE2 A 1 489 478 FE2 FE2 . 
C 2 FE2 A 1 490 479 FE2 FE2 . 
D 3 OXY A 1 491 480 OXY OXY . 
E 4 AKG A 1 701 701 AKG AKG . 
F 5 HOH A 1 500 500 HOH TIP . 
F 5 HOH A 2 501 501 HOH TIP . 
F 5 HOH A 3 502 502 HOH TIP . 
F 5 HOH A 4 503 503 HOH TIP . 
F 5 HOH A 5 504 504 HOH TIP . 
F 5 HOH A 6 505 505 HOH TIP . 
F 5 HOH A 7 506 506 HOH TIP . 
F 5 HOH A 8 507 507 HOH TIP . 
F 5 HOH A 9 508 508 HOH TIP . 
F 5 HOH A 10 509 509 HOH TIP . 
F 5 HOH A 11 510 510 HOH TIP . 
F 5 HOH A 12 511 511 HOH TIP . 
F 5 HOH A 13 512 512 HOH TIP . 
F 5 HOH A 14 513 513 HOH TIP . 
F 5 HOH A 15 514 514 HOH TIP . 
F 5 HOH A 16 515 515 HOH TIP . 
F 5 HOH A 17 516 516 HOH TIP . 
F 5 HOH A 18 517 517 HOH TIP . 
F 5 HOH A 19 518 518 HOH TIP . 
F 5 HOH A 20 519 519 HOH TIP . 
F 5 HOH A 21 520 520 HOH TIP . 
F 5 HOH A 22 521 521 HOH TIP . 
F 5 HOH A 23 522 522 HOH TIP . 
F 5 HOH A 24 523 523 HOH TIP . 
F 5 HOH A 25 524 524 HOH TIP . 
F 5 HOH A 26 525 525 HOH TIP . 
F 5 HOH A 27 526 526 HOH TIP . 
F 5 HOH A 28 527 527 HOH TIP . 
F 5 HOH A 29 528 528 HOH TIP . 
F 5 HOH A 30 529 529 HOH TIP . 
F 5 HOH A 31 530 530 HOH TIP . 
F 5 HOH A 32 531 531 HOH TIP . 
F 5 HOH A 33 532 532 HOH TIP . 
F 5 HOH A 34 533 533 HOH TIP . 
F 5 HOH A 35 534 534 HOH TIP . 
F 5 HOH A 36 535 535 HOH TIP . 
F 5 HOH A 37 536 536 HOH TIP . 
F 5 HOH A 38 537 537 HOH TIP . 
F 5 HOH A 39 538 538 HOH TIP . 
F 5 HOH A 40 539 539 HOH TIP . 
F 5 HOH A 41 540 540 HOH TIP . 
F 5 HOH A 42 541 541 HOH TIP . 
F 5 HOH A 43 542 542 HOH TIP . 
F 5 HOH A 44 543 543 HOH TIP . 
F 5 HOH A 45 544 544 HOH TIP . 
F 5 HOH A 46 545 545 HOH TIP . 
F 5 HOH A 47 546 546 HOH TIP . 
F 5 HOH A 48 547 547 HOH TIP . 
F 5 HOH A 49 548 548 HOH TIP . 
F 5 HOH A 50 549 549 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 OXY . . . D 3 -37.623 23.046 9.2 1 83.38 ? O1 OXY 491 A 1 
HETATM 2 O O2 OXY . . . D 3 -37.363 22.728 10.117 1 83.34 ? O2 OXY 491 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           2 
#