data_3KVF # _model_server_result.job_id goXpwe_HPNhcy3yvmBbijA _model_server_result.datetime_utc '2024-12-21 14:03:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":76}' # _entry.id 3KVF # _exptl.entry_id 3KVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 117.146 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'METHYL 4-AMINOBUTANOATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KVF _cell.length_a 87.089 _cell.length_b 87.089 _cell.length_c 193.476 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 95 A CYS 90 1_555 C CB GVE . B GVE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? covale ? covale2 B C GLY 75 B GLY 75 1_555 C N GVE . B GVE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.261 ? # _chem_comp.formula 'C5 H11 N O2' _chem_comp.formula_weight 117.146 _chem_comp.id GVE _chem_comp.mon_nstd_flag . _chem_comp.name 'METHYL 4-AMINOBUTANOATE' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C1 GVE sing 129 n n N H GVE sing 130 n n N H2 GVE sing 131 n n C1 CB GVE sing 132 n n C1 HA1 GVE sing 133 n n C1 HA2 GVE sing 134 n n CB CG GVE sing 135 n n CB HB1 GVE sing 136 n n CB HB2 GVE sing 137 n n CG C GVE sing 138 n n CG HG1 GVE sing 139 n n CG HG2 GVE sing 140 n n C OXT GVE sing 141 n n C O GVE doub 142 n n OXT CH3 GVE sing 143 n n CH3 HH31 GVE sing 144 n n CH3 HH32 GVE sing 145 n n CH3 HH33 GVE sing 146 n n # _atom_sites.entry_id 3KVF _atom_sites.fract_transf_matrix[1][1] 0.011483 _atom_sites.fract_transf_matrix[1][2] 0.006629 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005169 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GVE B 1 76 76 GVE GVE . D 4 HOH A 1 224 2 HOH HOH . D 4 HOH A 2 225 3 HOH HOH . E 4 HOH B 1 77 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GVE . . . C 3 -6.165 -30.629 -24.068 1 63.63 ? N GVE 76 B 1 HETATM 2 C C1 GVE . . . C 3 -5.248 -31.412 -24.882 1 67.15 ? C1 GVE 76 B 1 HETATM 3 C CB GVE . . . C 3 -3.841 -30.822 -24.814 1 66.97 ? CB GVE 76 B 1 HETATM 4 C CG GVE . . . C 3 -3.541 -29.971 -26.053 1 71.32 ? CG GVE 76 B 1 HETATM 5 C C GVE . . . C 3 -3.32 -30.829 -27.276 1 73.35 ? C GVE 76 B 1 HETATM 6 O OXT GVE . . . C 3 -4.192 -30.68 -28.429 1 75.37 ? OXT GVE 76 B 1 HETATM 7 O O GVE . . . C 3 -2.42 -31.653 -27.314 1 74.21 ? O GVE 76 B 1 HETATM 8 C CH3 GVE . . . C 3 -5.184 -31.673 -28.704 1 76.53 ? CH3 GVE 76 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 8 #