data_3KVH # _model_server_result.job_id 5iLruIk3xoXqPY0Vvl8gmw _model_server_result.datetime_utc '2024-11-21 12:35:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kvh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3KVH # _exptl.entry_id 3KVH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.64 _cell.angle_gamma 90 _cell.entry_id 3KVH _cell.length_a 68.811 _cell.length_b 60.278 _cell.length_c 60.483 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KVH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3KVH _atom_sites.fract_transf_matrix[1][1] 0.014533 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007937 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01659 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1 1 GOL GOL . C 3 CL A 1 219 219 CL CL . D 4 HOH A 1 220 220 HOH HOH . D 4 HOH A 2 221 221 HOH HOH . D 4 HOH A 3 222 222 HOH HOH . D 4 HOH A 4 223 223 HOH HOH . D 4 HOH A 5 224 224 HOH HOH . D 4 HOH A 6 225 225 HOH HOH . D 4 HOH A 7 226 226 HOH HOH . D 4 HOH A 8 227 227 HOH HOH . D 4 HOH A 9 229 229 HOH HOH . D 4 HOH A 10 230 230 HOH HOH . D 4 HOH A 11 232 232 HOH HOH . D 4 HOH A 12 233 233 HOH HOH . D 4 HOH A 13 234 234 HOH HOH . D 4 HOH A 14 235 235 HOH HOH . D 4 HOH A 15 236 236 HOH HOH . D 4 HOH A 16 237 237 HOH HOH . D 4 HOH A 17 238 238 HOH HOH . D 4 HOH A 18 239 239 HOH HOH . D 4 HOH A 19 240 240 HOH HOH . D 4 HOH A 20 241 241 HOH HOH . D 4 HOH A 21 242 242 HOH HOH . D 4 HOH A 22 243 243 HOH HOH . D 4 HOH A 23 244 244 HOH HOH . D 4 HOH A 24 245 245 HOH HOH . D 4 HOH A 25 246 246 HOH HOH . D 4 HOH A 26 247 247 HOH HOH . D 4 HOH A 27 248 248 HOH HOH . D 4 HOH A 28 249 249 HOH HOH . D 4 HOH A 29 250 250 HOH HOH . D 4 HOH A 30 251 251 HOH HOH . D 4 HOH A 31 252 252 HOH HOH . D 4 HOH A 32 253 253 HOH HOH . D 4 HOH A 33 254 254 HOH HOH . D 4 HOH A 34 255 255 HOH HOH . D 4 HOH A 35 256 256 HOH HOH . D 4 HOH A 36 257 257 HOH HOH . D 4 HOH A 37 258 258 HOH HOH . D 4 HOH A 38 259 259 HOH HOH . D 4 HOH A 39 260 260 HOH HOH . D 4 HOH A 40 261 261 HOH HOH . D 4 HOH A 41 262 262 HOH HOH . D 4 HOH A 42 263 263 HOH HOH . D 4 HOH A 43 264 264 HOH HOH . D 4 HOH A 44 265 265 HOH HOH . D 4 HOH A 45 266 266 HOH HOH . D 4 HOH A 46 267 267 HOH HOH . D 4 HOH A 47 268 268 HOH HOH . D 4 HOH A 48 269 269 HOH HOH . D 4 HOH A 49 270 270 HOH HOH . D 4 HOH A 50 271 271 HOH HOH . D 4 HOH A 51 272 272 HOH HOH . D 4 HOH A 52 273 273 HOH HOH . D 4 HOH A 53 274 274 HOH HOH . D 4 HOH A 54 275 275 HOH HOH . D 4 HOH A 55 276 276 HOH HOH . D 4 HOH A 56 277 277 HOH HOH . D 4 HOH A 57 278 278 HOH HOH . D 4 HOH A 58 279 279 HOH HOH . D 4 HOH A 59 280 280 HOH HOH . D 4 HOH A 60 281 281 HOH HOH . D 4 HOH A 61 282 282 HOH HOH . D 4 HOH A 62 283 283 HOH HOH . D 4 HOH A 63 284 284 HOH HOH . D 4 HOH A 64 285 285 HOH HOH . D 4 HOH A 65 286 286 HOH HOH . D 4 HOH A 66 287 287 HOH HOH . D 4 HOH A 67 288 288 HOH HOH . D 4 HOH A 68 289 289 HOH HOH . D 4 HOH A 69 290 290 HOH HOH . D 4 HOH A 70 291 291 HOH HOH . D 4 HOH A 71 292 292 HOH HOH . D 4 HOH A 72 293 293 HOH HOH . D 4 HOH A 73 294 294 HOH HOH . D 4 HOH A 74 295 295 HOH HOH . D 4 HOH A 75 296 296 HOH HOH . D 4 HOH A 76 297 297 HOH HOH . D 4 HOH A 77 298 298 HOH HOH . D 4 HOH A 78 299 299 HOH HOH . D 4 HOH A 79 300 300 HOH HOH . D 4 HOH A 80 301 301 HOH HOH . D 4 HOH A 81 302 302 HOH HOH . D 4 HOH A 82 303 303 HOH HOH . D 4 HOH A 83 304 304 HOH HOH . D 4 HOH A 84 305 305 HOH HOH . D 4 HOH A 85 306 306 HOH HOH . D 4 HOH A 86 307 307 HOH HOH . D 4 HOH A 87 308 308 HOH HOH . D 4 HOH A 88 309 309 HOH HOH . D 4 HOH A 89 310 310 HOH HOH . D 4 HOH A 90 311 311 HOH HOH . D 4 HOH A 91 312 312 HOH HOH . D 4 HOH A 92 313 313 HOH HOH . D 4 HOH A 93 314 314 HOH HOH . D 4 HOH A 94 315 315 HOH HOH . D 4 HOH A 95 316 316 HOH HOH . D 4 HOH A 96 317 317 HOH HOH . D 4 HOH A 97 318 318 HOH HOH . D 4 HOH A 98 319 319 HOH HOH . D 4 HOH A 99 320 320 HOH HOH . D 4 HOH A 100 321 321 HOH HOH . D 4 HOH A 101 322 322 HOH HOH . D 4 HOH A 102 323 323 HOH HOH . D 4 HOH A 103 324 324 HOH HOH . D 4 HOH A 104 325 325 HOH HOH . D 4 HOH A 105 326 326 HOH HOH . D 4 HOH A 106 327 327 HOH HOH . D 4 HOH A 107 328 328 HOH HOH . D 4 HOH A 108 329 329 HOH HOH . D 4 HOH A 109 330 330 HOH HOH . D 4 HOH A 110 331 331 HOH HOH . D 4 HOH A 111 332 332 HOH HOH . D 4 HOH A 112 333 333 HOH HOH . D 4 HOH A 113 334 334 HOH HOH . D 4 HOH A 114 335 335 HOH HOH . D 4 HOH A 115 336 336 HOH HOH . D 4 HOH A 116 337 337 HOH HOH . D 4 HOH A 117 338 338 HOH HOH . D 4 HOH A 118 339 339 HOH HOH . D 4 HOH A 119 340 340 HOH HOH . D 4 HOH A 120 341 341 HOH HOH . D 4 HOH A 121 342 342 HOH HOH . D 4 HOH A 122 343 343 HOH HOH . D 4 HOH A 123 344 344 HOH HOH . D 4 HOH A 124 345 345 HOH HOH . D 4 HOH A 125 346 346 HOH HOH . D 4 HOH A 126 347 347 HOH HOH . D 4 HOH A 127 348 348 HOH HOH . D 4 HOH A 128 349 349 HOH HOH . D 4 HOH A 129 350 350 HOH HOH . D 4 HOH A 130 351 351 HOH HOH . D 4 HOH A 131 352 352 HOH HOH . D 4 HOH A 132 353 353 HOH HOH . D 4 HOH A 133 354 354 HOH HOH . D 4 HOH A 134 355 355 HOH HOH . D 4 HOH A 135 356 356 HOH HOH . D 4 HOH A 136 357 357 HOH HOH . D 4 HOH A 137 358 358 HOH HOH . D 4 HOH A 138 359 359 HOH HOH . D 4 HOH A 139 360 360 HOH HOH . D 4 HOH A 140 361 361 HOH HOH . D 4 HOH A 141 362 362 HOH HOH . D 4 HOH A 142 363 363 HOH HOH . D 4 HOH A 143 364 364 HOH HOH . D 4 HOH A 144 365 365 HOH HOH . D 4 HOH A 145 366 366 HOH HOH . D 4 HOH A 146 367 367 HOH HOH . D 4 HOH A 147 368 368 HOH HOH . D 4 HOH A 148 369 369 HOH HOH . D 4 HOH A 149 370 370 HOH HOH . D 4 HOH A 150 371 371 HOH HOH . D 4 HOH A 151 372 372 HOH HOH . D 4 HOH A 152 373 373 HOH HOH . D 4 HOH A 153 374 374 HOH HOH . D 4 HOH A 154 375 375 HOH HOH . D 4 HOH A 155 376 376 HOH HOH . D 4 HOH A 156 377 377 HOH HOH . D 4 HOH A 157 378 378 HOH HOH . D 4 HOH A 158 379 379 HOH HOH . D 4 HOH A 159 381 381 HOH HOH . D 4 HOH A 160 382 382 HOH HOH . D 4 HOH A 161 383 383 HOH HOH . D 4 HOH A 162 384 384 HOH HOH . D 4 HOH A 163 385 385 HOH HOH . D 4 HOH A 164 386 386 HOH HOH . D 4 HOH A 165 387 387 HOH HOH . D 4 HOH A 166 388 388 HOH HOH . D 4 HOH A 167 389 389 HOH HOH . D 4 HOH A 168 390 390 HOH HOH . D 4 HOH A 169 391 391 HOH HOH . D 4 HOH A 170 392 392 HOH HOH . D 4 HOH A 171 393 393 HOH HOH . D 4 HOH A 172 394 394 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -1.033 48.467 16.252 1 47.74 ? C1 GOL 1 A 1 HETATM 2 O O1 GOL . . . B 2 -1.438 49.812 16.148 1 49.02 ? O1 GOL 1 A 1 HETATM 3 C C2 GOL . . . B 2 0.218 48.367 17.124 1 47.51 ? C2 GOL 1 A 1 HETATM 4 O O2 GOL . . . B 2 1.341 48.043 16.329 1 46.51 ? O2 GOL 1 A 1 HETATM 5 C C3 GOL . . . B 2 0.016 47.285 18.175 1 47.16 ? C3 GOL 1 A 1 HETATM 6 O O3 GOL . . . B 2 1.044 47.299 19.139 1 47.15 ? O3 GOL 1 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #