data_3KVK
#
_model_server_result.job_id            X74wSmj1pDjg4h_4py3UZQ 
_model_server_result.datetime_utc      '2024-11-23 23:40:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kvk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":400}' 
#
_entry.id    3KVK 
#
_exptl.entry_id    3KVK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              215.375 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            UNDECYLAMINE-N,N-DIMETHYL-N-OXIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3KVK 
_cell.length_a            90.908 
_cell.length_b            90.908 
_cell.length_c            123.077 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KVK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C13 H29 N O' 
_chem_comp.formula_weight    215.375 
_chem_comp.id                DET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              UNDECYLAMINE-N,N-DIMETHYL-N-OXIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N O DET sing 102 n n 
N CM1 DET sing 103 n n 
N CM2 DET sing 104 n n 
N C1 DET sing 105 n n 
CM1 HM11 DET sing 106 n n 
CM1 HM12 DET sing 107 n n 
CM1 HM13 DET sing 108 n n 
CM2 HM21 DET sing 109 n n 
CM2 HM22 DET sing 110 n n 
CM2 HM23 DET sing 111 n n 
C1 C2 DET sing 112 n n 
C1 H11 DET sing 113 n n 
C1 H12 DET sing 114 n n 
C2 C3 DET sing 115 n n 
C2 H21 DET sing 116 n n 
C2 H22 DET sing 117 n n 
C3 C4 DET sing 118 n n 
C3 H31 DET sing 119 n n 
C3 H32 DET sing 120 n n 
C4 C5 DET sing 121 n n 
C4 H41 DET sing 122 n n 
C4 H42 DET sing 123 n n 
C5 C6 DET sing 124 n n 
C5 H51 DET sing 125 n n 
C5 H52 DET sing 126 n n 
C6 C7 DET sing 127 n n 
C6 H61 DET sing 128 n n 
C6 H62 DET sing 129 n n 
C7 C8 DET sing 130 n n 
C7 H71 DET sing 131 n n 
C7 H72 DET sing 132 n n 
C8 C9 DET sing 133 n n 
C8 H81 DET sing 134 n n 
C8 H82 DET sing 135 n n 
C9 C10 DET sing 136 n n 
C9 H91 DET sing 137 n n 
C9 H92 DET sing 138 n n 
C10 C11 DET sing 139 n n 
C10 H101 DET sing 140 n n 
C10 H102 DET sing 141 n n 
C11 H111 DET sing 142 n n 
C11 H112 DET sing 143 n n 
C11 H113 DET sing 144 n n 
#
_atom_sites.entry_id                     3KVK 
_atom_sites.fract_transf_matrix[1][1]    0.011 
_atom_sites.fract_transf_matrix[1][2]    0.006351 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012702 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008125 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 397 397 SO4 SO4 . 
C 3 FMN A 1 398 398 FMN FMN . 
D 4 DOR A 1 399 399 DOR DOR . 
E 5 DET A 1 400 400 DET DET . 
F 6 6X1 A 1 401 401 6X1 6X1 . 
G 7 HOH A 1 402 402 HOH HOH . 
G 7 HOH A 2 403 403 HOH HOH . 
G 7 HOH A 3 404 404 HOH HOH . 
G 7 HOH A 4 405 405 HOH HOH . 
G 7 HOH A 5 406 406 HOH HOH . 
G 7 HOH A 6 407 407 HOH HOH . 
G 7 HOH A 7 408 408 HOH HOH . 
G 7 HOH A 8 409 409 HOH HOH . 
G 7 HOH A 9 410 410 HOH HOH . 
G 7 HOH A 10 411 411 HOH HOH . 
G 7 HOH A 11 412 412 HOH HOH . 
G 7 HOH A 12 413 413 HOH HOH . 
G 7 HOH A 13 414 414 HOH HOH . 
G 7 HOH A 14 415 415 HOH HOH . 
G 7 HOH A 15 416 416 HOH HOH . 
G 7 HOH A 16 417 417 HOH HOH . 
G 7 HOH A 17 418 418 HOH HOH . 
G 7 HOH A 18 419 419 HOH HOH . 
G 7 HOH A 19 420 420 HOH HOH . 
G 7 HOH A 20 421 421 HOH HOH . 
G 7 HOH A 21 422 422 HOH HOH . 
G 7 HOH A 22 423 423 HOH HOH . 
G 7 HOH A 23 424 424 HOH HOH . 
G 7 HOH A 24 425 425 HOH HOH . 
G 7 HOH A 25 426 426 HOH HOH . 
G 7 HOH A 26 427 427 HOH HOH . 
G 7 HOH A 27 428 428 HOH HOH . 
G 7 HOH A 28 429 429 HOH HOH . 
G 7 HOH A 29 430 430 HOH HOH . 
G 7 HOH A 30 431 431 HOH HOH . 
G 7 HOH A 31 432 432 HOH HOH . 
G 7 HOH A 32 433 433 HOH HOH . 
G 7 HOH A 33 434 434 HOH HOH . 
G 7 HOH A 34 435 435 HOH HOH . 
G 7 HOH A 35 436 436 HOH HOH . 
G 7 HOH A 36 437 437 HOH HOH . 
G 7 HOH A 37 438 438 HOH HOH . 
G 7 HOH A 38 439 439 HOH HOH . 
G 7 HOH A 39 440 440 HOH HOH . 
G 7 HOH A 40 441 441 HOH HOH . 
G 7 HOH A 41 442 442 HOH HOH . 
G 7 HOH A 42 443 443 HOH HOH . 
G 7 HOH A 43 444 444 HOH HOH . 
G 7 HOH A 44 445 445 HOH HOH . 
G 7 HOH A 45 446 446 HOH HOH . 
G 7 HOH A 46 447 447 HOH HOH . 
G 7 HOH A 47 448 448 HOH HOH . 
G 7 HOH A 48 449 449 HOH HOH . 
G 7 HOH A 49 450 450 HOH HOH . 
G 7 HOH A 50 451 451 HOH HOH . 
G 7 HOH A 51 452 452 HOH HOH . 
G 7 HOH A 52 453 453 HOH HOH . 
G 7 HOH A 53 454 454 HOH HOH . 
G 7 HOH A 54 455 455 HOH HOH . 
G 7 HOH A 55 456 456 HOH HOH . 
G 7 HOH A 56 457 457 HOH HOH . 
G 7 HOH A 57 458 458 HOH HOH . 
G 7 HOH A 58 459 459 HOH HOH . 
G 7 HOH A 59 460 460 HOH HOH . 
G 7 HOH A 60 461 461 HOH HOH . 
G 7 HOH A 61 462 462 HOH HOH . 
G 7 HOH A 62 463 463 HOH HOH . 
G 7 HOH A 63 464 464 HOH HOH . 
G 7 HOH A 64 465 465 HOH HOH . 
G 7 HOH A 65 466 466 HOH HOH . 
G 7 HOH A 66 467 467 HOH HOH . 
G 7 HOH A 67 468 468 HOH HOH . 
G 7 HOH A 68 469 469 HOH HOH . 
G 7 HOH A 69 470 470 HOH HOH . 
G 7 HOH A 70 471 471 HOH HOH . 
G 7 HOH A 71 472 472 HOH HOH . 
G 7 HOH A 72 473 473 HOH HOH . 
G 7 HOH A 73 474 474 HOH HOH . 
G 7 HOH A 74 475 475 HOH HOH . 
G 7 HOH A 75 476 476 HOH HOH . 
G 7 HOH A 76 477 477 HOH HOH . 
G 7 HOH A 77 478 478 HOH HOH . 
G 7 HOH A 78 479 479 HOH HOH . 
G 7 HOH A 79 480 480 HOH HOH . 
G 7 HOH A 80 481 481 HOH HOH . 
G 7 HOH A 81 482 482 HOH HOH . 
G 7 HOH A 82 483 483 HOH HOH . 
G 7 HOH A 83 484 484 HOH HOH . 
G 7 HOH A 84 485 485 HOH HOH . 
G 7 HOH A 85 486 486 HOH HOH . 
G 7 HOH A 86 487 487 HOH HOH . 
G 7 HOH A 87 488 488 HOH HOH . 
G 7 HOH A 88 489 489 HOH HOH . 
G 7 HOH A 89 490 490 HOH HOH . 
G 7 HOH A 90 491 491 HOH HOH . 
G 7 HOH A 91 492 492 HOH HOH . 
G 7 HOH A 92 493 493 HOH HOH . 
G 7 HOH A 93 494 494 HOH HOH . 
G 7 HOH A 94 495 495 HOH HOH . 
G 7 HOH A 95 496 496 HOH HOH . 
G 7 HOH A 96 497 497 HOH HOH . 
G 7 HOH A 97 498 498 HOH HOH . 
G 7 HOH A 98 499 499 HOH HOH . 
G 7 HOH A 99 500 500 HOH HOH . 
G 7 HOH A 100 501 501 HOH HOH . 
G 7 HOH A 101 502 502 HOH HOH . 
G 7 HOH A 102 503 503 HOH HOH . 
G 7 HOH A 103 504 504 HOH HOH . 
G 7 HOH A 104 505 505 HOH HOH . 
G 7 HOH A 105 506 506 HOH HOH . 
G 7 HOH A 106 507 507 HOH HOH . 
G 7 HOH A 107 508 508 HOH HOH . 
G 7 HOH A 108 509 509 HOH HOH . 
G 7 HOH A 109 510 510 HOH HOH . 
G 7 HOH A 110 511 511 HOH HOH . 
G 7 HOH A 111 512 512 HOH HOH . 
G 7 HOH A 112 513 513 HOH HOH . 
G 7 HOH A 113 514 514 HOH HOH . 
G 7 HOH A 114 515 515 HOH HOH . 
G 7 HOH A 115 516 516 HOH HOH . 
G 7 HOH A 116 517 517 HOH HOH . 
G 7 HOH A 117 518 518 HOH HOH . 
G 7 HOH A 118 519 519 HOH HOH . 
G 7 HOH A 119 520 520 HOH HOH . 
G 7 HOH A 120 521 521 HOH HOH . 
G 7 HOH A 121 522 522 HOH HOH . 
G 7 HOH A 122 523 523 HOH HOH . 
G 7 HOH A 123 524 524 HOH HOH . 
G 7 HOH A 124 525 525 HOH HOH . 
G 7 HOH A 125 526 526 HOH HOH . 
G 7 HOH A 126 527 527 HOH HOH . 
G 7 HOH A 127 528 528 HOH HOH . 
G 7 HOH A 128 529 529 HOH HOH . 
G 7 HOH A 129 530 530 HOH HOH . 
G 7 HOH A 130 531 531 HOH HOH . 
G 7 HOH A 131 532 532 HOH HOH . 
G 7 HOH A 132 533 533 HOH HOH . 
G 7 HOH A 133 534 534 HOH HOH . 
G 7 HOH A 134 535 535 HOH HOH . 
G 7 HOH A 135 536 536 HOH HOH . 
G 7 HOH A 136 537 537 HOH HOH . 
G 7 HOH A 137 538 538 HOH HOH . 
G 7 HOH A 138 539 539 HOH HOH . 
G 7 HOH A 139 540 540 HOH HOH . 
G 7 HOH A 140 541 541 HOH HOH . 
G 7 HOH A 141 542 542 HOH HOH . 
G 7 HOH A 142 543 543 HOH HOH . 
G 7 HOH A 143 544 544 HOH HOH . 
G 7 HOH A 144 545 545 HOH HOH . 
G 7 HOH A 145 546 546 HOH HOH . 
G 7 HOH A 146 547 547 HOH HOH . 
G 7 HOH A 147 548 548 HOH HOH . 
G 7 HOH A 148 549 549 HOH HOH . 
G 7 HOH A 149 550 550 HOH HOH . 
G 7 HOH A 150 551 551 HOH HOH . 
G 7 HOH A 151 552 552 HOH HOH . 
G 7 HOH A 152 553 553 HOH HOH . 
G 7 HOH A 153 554 554 HOH HOH . 
G 7 HOH A 154 555 555 HOH HOH . 
G 7 HOH A 155 556 556 HOH HOH . 
G 7 HOH A 156 557 557 HOH HOH . 
G 7 HOH A 157 558 558 HOH HOH . 
G 7 HOH A 158 559 559 HOH HOH . 
G 7 HOH A 159 560 560 HOH HOH . 
G 7 HOH A 160 561 561 HOH HOH . 
G 7 HOH A 161 562 562 HOH HOH . 
G 7 HOH A 162 563 563 HOH HOH . 
G 7 HOH A 163 564 564 HOH HOH . 
G 7 HOH A 164 565 565 HOH HOH . 
G 7 HOH A 165 566 566 HOH HOH . 
G 7 HOH A 166 567 567 HOH HOH . 
G 7 HOH A 167 568 568 HOH HOH . 
G 7 HOH A 168 569 569 HOH HOH . 
G 7 HOH A 169 570 570 HOH HOH . 
G 7 HOH A 170 571 571 HOH HOH . 
G 7 HOH A 171 572 572 HOH HOH . 
G 7 HOH A 172 573 573 HOH HOH . 
G 7 HOH A 173 574 574 HOH HOH . 
G 7 HOH A 174 575 575 HOH HOH . 
G 7 HOH A 175 576 576 HOH HOH . 
G 7 HOH A 176 577 577 HOH HOH . 
G 7 HOH A 177 578 578 HOH HOH . 
G 7 HOH A 178 579 579 HOH HOH . 
G 7 HOH A 179 580 580 HOH HOH . 
G 7 HOH A 180 581 581 HOH HOH . 
G 7 HOH A 181 582 582 HOH HOH . 
G 7 HOH A 182 583 583 HOH HOH . 
G 7 HOH A 183 584 584 HOH HOH . 
G 7 HOH A 184 585 585 HOH HOH . 
G 7 HOH A 185 586 586 HOH HOH . 
G 7 HOH A 186 587 587 HOH HOH . 
G 7 HOH A 187 588 588 HOH HOH . 
G 7 HOH A 188 589 589 HOH HOH . 
G 7 HOH A 189 590 590 HOH HOH . 
G 7 HOH A 190 591 591 HOH HOH . 
G 7 HOH A 191 592 592 HOH HOH . 
G 7 HOH A 192 593 593 HOH HOH . 
G 7 HOH A 193 594 594 HOH HOH . 
G 7 HOH A 194 595 595 HOH HOH . 
G 7 HOH A 195 596 596 HOH HOH . 
G 7 HOH A 196 597 597 HOH HOH . 
G 7 HOH A 197 598 598 HOH HOH . 
G 7 HOH A 198 599 599 HOH HOH . 
G 7 HOH A 199 600 600 HOH HOH . 
G 7 HOH A 200 601 601 HOH HOH . 
G 7 HOH A 201 602 602 HOH HOH . 
G 7 HOH A 202 603 603 HOH HOH . 
G 7 HOH A 203 604 604 HOH HOH . 
G 7 HOH A 204 605 605 HOH HOH . 
G 7 HOH A 205 606 606 HOH HOH . 
G 7 HOH A 206 607 607 HOH HOH . 
G 7 HOH A 207 608 608 HOH HOH . 
G 7 HOH A 208 609 609 HOH HOH . 
G 7 HOH A 209 610 610 HOH HOH . 
G 7 HOH A 210 611 611 HOH HOH . 
G 7 HOH A 211 612 612 HOH HOH . 
G 7 HOH A 212 613 613 HOH HOH . 
G 7 HOH A 213 614 614 HOH HOH . 
G 7 HOH A 214 615 615 HOH HOH . 
G 7 HOH A 215 616 616 HOH HOH . 
G 7 HOH A 216 617 617 HOH HOH . 
G 7 HOH A 217 618 618 HOH HOH . 
G 7 HOH A 218 619 619 HOH HOH . 
G 7 HOH A 219 620 620 HOH HOH . 
G 7 HOH A 220 621 621 HOH HOH . 
G 7 HOH A 221 622 622 HOH HOH . 
G 7 HOH A 222 623 623 HOH HOH . 
G 7 HOH A 223 624 624 HOH HOH . 
G 7 HOH A 224 625 625 HOH HOH . 
G 7 HOH A 225 626 626 HOH HOH . 
G 7 HOH A 226 627 627 HOH HOH . 
G 7 HOH A 227 628 628 HOH HOH . 
G 7 HOH A 228 629 629 HOH HOH . 
G 7 HOH A 229 630 630 HOH HOH . 
G 7 HOH A 230 631 631 HOH HOH . 
G 7 HOH A 231 632 632 HOH HOH . 
G 7 HOH A 232 633 633 HOH HOH . 
G 7 HOH A 233 634 634 HOH HOH . 
G 7 HOH A 234 635 635 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N DET . . . E 5 -7.815 44.672 3.16 1 69.64 ? N DET 400 A 1 
HETATM 2 O O DET . . . E 5 -7.612 45.657 2.101 1 69.82 ? O DET 400 A 1 
HETATM 3 C CM1 DET . . . E 5 -8.097 43.359 2.56 1 69.7 ? CM1 DET 400 A 1 
HETATM 4 C CM2 DET . . . E 5 -6.58 44.582 3.951 1 69.06 ? CM2 DET 400 A 1 
HETATM 5 C C1 DET . . . E 5 -8.922 45.053 4.052 1 69.25 ? C1 DET 400 A 1 
HETATM 6 C C2 DET . . . E 5 -9.975 45.905 3.338 1 69.47 ? C2 DET 400 A 1 
HETATM 7 C C3 DET . . . E 5 -9.46 47.315 3.036 1 69.21 ? C3 DET 400 A 1 
HETATM 8 C C4 DET . . . E 5 -9.316 48.156 4.307 1 67.71 ? C4 DET 400 A 1 
HETATM 9 C C5 DET . . . E 5 -8.641 49.494 3.996 1 67.06 ? C5 DET 400 A 1 
HETATM 10 C C6 DET . . . E 5 -8.586 50.419 5.214 1 66.85 ? C6 DET 400 A 1 
HETATM 11 C C7 DET . . . E 5 -9.975 50.94 5.59 1 67.15 ? C7 DET 400 A 1 
HETATM 12 C C8 DET . . . E 5 -9.896 51.932 6.752 1 67.03 ? C8 DET 400 A 1 
HETATM 13 C C9 DET . . . E 5 -11.284 52.474 7.101 1 67.66 ? C9 DET 400 A 1 
HETATM 14 C C10 DET . . . E 5 -11.21 53.467 8.262 1 67.95 ? C10 DET 400 A 1 
HETATM 15 C C11 DET . . . E 5 -12.599 54.006 8.612 1 68.59 ? C11 DET 400 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           15 
#