data_3KVO
#
_model_server_result.job_id            Wj7O1Sjs1i8vRAyJ9AYnhg 
_model_server_result.datetime_utc      '2024-12-26 18:56:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kvo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    3KVO 
#
_exptl.entry_id    3KVO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KVO 
_cell.length_a            61.149 
_cell.length_b            78.332 
_cell.length_c            121.765 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KVO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
A,B,C,D,E,F,G,H 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     3KVO 
_atom_sites.fract_transf_matrix[1][1]    0.016353 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012766 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008213 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 501 501 NAP NAP . 
D 2 NAP A 1 502 502 NAP NAP . 
E 2 NAP B 1 501 501 NAP NAP . 
F 2 NAP B 1 502 502 NAP NAP . 
G 3 HOH A 1 312 1 HOH HOH . 
G 3 HOH A 2 313 2 HOH HOH . 
G 3 HOH A 3 314 3 HOH HOH . 
G 3 HOH A 4 315 7 HOH HOH . 
G 3 HOH A 5 316 8 HOH HOH . 
G 3 HOH A 6 317 9 HOH HOH . 
G 3 HOH A 7 318 10 HOH HOH . 
G 3 HOH A 8 319 11 HOH HOH . 
G 3 HOH A 9 320 12 HOH HOH . 
G 3 HOH A 10 321 14 HOH HOH . 
G 3 HOH A 11 322 18 HOH HOH . 
G 3 HOH A 12 323 36 HOH HOH . 
G 3 HOH A 13 324 40 HOH HOH . 
G 3 HOH A 14 325 45 HOH HOH . 
G 3 HOH A 15 326 47 HOH HOH . 
G 3 HOH A 16 327 48 HOH HOH . 
G 3 HOH A 17 328 49 HOH HOH . 
G 3 HOH A 18 329 51 HOH HOH . 
G 3 HOH A 19 330 52 HOH HOH . 
G 3 HOH A 20 331 53 HOH HOH . 
G 3 HOH A 21 332 54 HOH HOH . 
G 3 HOH A 22 333 55 HOH HOH . 
G 3 HOH A 23 334 56 HOH HOH . 
G 3 HOH A 24 335 57 HOH HOH . 
G 3 HOH A 25 336 58 HOH HOH . 
G 3 HOH A 26 337 59 HOH HOH . 
G 3 HOH A 27 338 60 HOH HOH . 
G 3 HOH A 28 339 61 HOH HOH . 
G 3 HOH A 29 340 63 HOH HOH . 
G 3 HOH A 30 341 64 HOH HOH . 
G 3 HOH A 31 342 65 HOH HOH . 
G 3 HOH A 32 343 66 HOH HOH . 
G 3 HOH A 33 344 67 HOH HOH . 
G 3 HOH A 34 345 68 HOH HOH . 
G 3 HOH A 35 346 69 HOH HOH . 
G 3 HOH A 36 347 70 HOH HOH . 
G 3 HOH A 37 348 71 HOH HOH . 
G 3 HOH A 38 349 76 HOH HOH . 
G 3 HOH A 39 350 77 HOH HOH . 
G 3 HOH A 40 351 78 HOH HOH . 
G 3 HOH A 41 352 79 HOH HOH . 
G 3 HOH A 42 353 80 HOH HOH . 
G 3 HOH A 43 354 81 HOH HOH . 
G 3 HOH A 44 355 89 HOH HOH . 
G 3 HOH A 45 356 90 HOH HOH . 
G 3 HOH A 46 357 91 HOH HOH . 
G 3 HOH A 47 358 94 HOH HOH . 
G 3 HOH A 48 359 95 HOH HOH . 
G 3 HOH A 49 360 96 HOH HOH . 
G 3 HOH A 50 361 99 HOH HOH . 
G 3 HOH A 51 362 101 HOH HOH . 
G 3 HOH A 52 363 106 HOH HOH . 
G 3 HOH A 53 364 107 HOH HOH . 
G 3 HOH A 54 365 108 HOH HOH . 
G 3 HOH A 55 366 112 HOH HOH . 
H 3 HOH B 1 312 6 HOH HOH . 
H 3 HOH B 2 313 15 HOH HOH . 
H 3 HOH B 3 314 16 HOH HOH . 
H 3 HOH B 4 315 17 HOH HOH . 
H 3 HOH B 5 316 23 HOH HOH . 
H 3 HOH B 6 317 24 HOH HOH . 
H 3 HOH B 7 318 25 HOH HOH . 
H 3 HOH B 8 319 26 HOH HOH . 
H 3 HOH B 9 320 27 HOH HOH . 
H 3 HOH B 10 321 28 HOH HOH . 
H 3 HOH B 11 322 29 HOH HOH . 
H 3 HOH B 12 323 30 HOH HOH . 
H 3 HOH B 13 324 31 HOH HOH . 
H 3 HOH B 14 325 32 HOH HOH . 
H 3 HOH B 15 326 33 HOH HOH . 
H 3 HOH B 16 327 35 HOH HOH . 
H 3 HOH B 17 328 37 HOH HOH . 
H 3 HOH B 18 329 38 HOH HOH . 
H 3 HOH B 19 330 39 HOH HOH . 
H 3 HOH B 20 331 41 HOH HOH . 
H 3 HOH B 21 332 42 HOH HOH . 
H 3 HOH B 22 333 43 HOH HOH . 
H 3 HOH B 23 334 44 HOH HOH . 
H 3 HOH B 24 335 50 HOH HOH . 
H 3 HOH B 25 336 62 HOH HOH . 
H 3 HOH B 26 337 72 HOH HOH . 
H 3 HOH B 27 338 73 HOH HOH . 
H 3 HOH B 28 339 74 HOH HOH . 
H 3 HOH B 29 340 75 HOH HOH . 
H 3 HOH B 30 341 82 HOH HOH . 
H 3 HOH B 31 342 83 HOH HOH . 
H 3 HOH B 32 343 84 HOH HOH . 
H 3 HOH B 33 344 85 HOH HOH . 
H 3 HOH B 34 345 86 HOH HOH . 
H 3 HOH B 35 346 87 HOH HOH . 
H 3 HOH B 36 347 88 HOH HOH . 
H 3 HOH B 37 348 93 HOH HOH . 
H 3 HOH B 38 349 97 HOH HOH . 
H 3 HOH B 39 350 98 HOH HOH . 
H 3 HOH B 40 351 100 HOH HOH . 
H 3 HOH B 41 352 102 HOH HOH . 
H 3 HOH B 42 353 103 HOH HOH . 
H 3 HOH B 43 354 104 HOH HOH . 
H 3 HOH B 44 355 105 HOH HOH . 
H 3 HOH B 45 356 109 HOH HOH . 
H 3 HOH B 46 357 110 HOH HOH . 
H 3 HOH B 47 358 111 HOH HOH . 
H 3 HOH B 48 359 113 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5B NAP . . . D 2 21.9 23.292 88.144 1 31.79 ? O5B NAP 502 A 1 
HETATM 2 C C5B NAP . . . D 2 23.185 23.201 87.546 1 32.05 ? C5B NAP 502 A 1 
HETATM 3 C C4B NAP . . . D 2 24.374 23.202 88.538 1 31.89 ? C4B NAP 502 A 1 
HETATM 4 O O4B NAP . . . D 2 24.04 22.717 89.83 1 31.41 ? O4B NAP 502 A 1 
HETATM 5 C C3B NAP . . . D 2 25.558 22.321 88.083 1 32.51 ? C3B NAP 502 A 1 
HETATM 6 O O3B NAP . . . D 2 26.576 23.11 87.508 1 34.83 ? O3B NAP 502 A 1 
HETATM 7 C C2B NAP . . . D 2 26.064 21.57 89.314 1 30.57 ? C2B NAP 502 A 1 
HETATM 8 O O2B NAP . . . D 2 27.12 22.226 89.997 1 28.93 ? O2B NAP 502 A 1 
HETATM 9 C C1B NAP . . . D 2 24.863 21.6 90.235 1 29.84 ? C1B NAP 502 A 1 
HETATM 10 N N9A NAP . . . D 2 24.098 20.324 90.242 1 27.16 ? N9A NAP 502 A 1 
HETATM 11 C C8A NAP . . . D 2 22.876 20.145 89.639 1 27.41 ? C8A NAP 502 A 1 
HETATM 12 N N7A NAP . . . D 2 22.436 18.893 89.886 1 26.44 ? N7A NAP 502 A 1 
HETATM 13 C C5A NAP . . . D 2 23.35 18.245 90.639 1 24.41 ? C5A NAP 502 A 1 
HETATM 14 C C6A NAP . . . D 2 23.371 16.946 91.147 1 23.47 ? C6A NAP 502 A 1 
HETATM 15 N N6A NAP . . . D 2 22.36 16.1 90.903 1 22.11 ? N6A NAP 502 A 1 
HETATM 16 N N1A NAP . . . D 2 24.45 16.546 91.908 1 21.21 ? N1A NAP 502 A 1 
HETATM 17 C C2A NAP . . . D 2 25.484 17.437 92.154 1 21.18 ? C2A NAP 502 A 1 
HETATM 18 N N3A NAP . . . D 2 25.458 18.709 91.632 1 20.99 ? N3A NAP 502 A 1 
HETATM 19 C C4A NAP . . . D 2 24.407 19.124 90.873 1 25.04 ? C4A NAP 502 A 1 
HETATM 20 P P2B NAP . . . D 2 28.584 21.62 90.315 1 27.01 ? P2B NAP 502 A 1 
HETATM 21 O O1X NAP . . . D 2 28.572 20.945 91.655 1 26.89 ? O1X NAP 502 A 1 
HETATM 22 O O2X NAP . . . D 2 29.567 22.758 90.361 1 28.14 ? O2X NAP 502 A 1 
HETATM 23 O O3X NAP . . . D 2 29.033 20.658 89.236 1 29.42 ? O3X NAP 502 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#