data_3KVP # _model_server_result.job_id vFl3apLkjZKHU_e2zTguhg _model_server_result.datetime_utc '2024-12-22 06:33:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kvp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":74}' # _entry.id 3KVP # _exptl.entry_id 3KVP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KVP _cell.length_a 66.39 _cell.length_b 66.39 _cell.length_c 175.573 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 34 A VAL 34 1_555 A N MSE 35 A MSE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C MSE 35 A MSE 35 1_555 A N GLU 36 A GLU 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 B C VAL 34 B VAL 34 1_555 B N MSE 35 B MSE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C MSE 35 B MSE 35 1_555 B N GLU 36 B GLU 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 C C VAL 34 C VAL 34 1_555 C N MSE 35 C MSE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale6 C C MSE 35 C MSE 35 1_555 C N GLU 36 C GLU 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale7 D C VAL 34 D VAL 34 1_555 D N MSE 35 D MSE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale8 D C MSE 35 D MSE 35 1_555 D N GLU 36 D GLU 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 E C VAL 34 E VAL 34 1_555 E N MSE 35 E MSE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 E C MSE 35 E MSE 35 1_555 E N GLU 36 E GLU 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 F C VAL 34 F VAL 34 1_555 F N MSE 35 F MSE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 F C MSE 35 F MSE 35 1_555 F N GLU 36 F GLU 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 1 n n C OXT ACY sing 2 n n C CH3 ACY sing 3 n n OXT HXT ACY sing 4 n n CH3 H1 ACY sing 5 n n CH3 H2 ACY sing 6 n n CH3 H3 ACY sing 7 n n # _atom_sites.entry_id 3KVP _atom_sites.fract_transf_matrix[1][1] 0.015063 _atom_sites.fract_transf_matrix[1][2] 0.008696 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ACY B 1 73 73 ACY ACY . H 2 ACY B 1 74 2 ACY ACY . I 3 HOH A 1 73 1 HOH HOH . I 3 HOH A 2 74 2 HOH HOH . I 3 HOH A 3 75 3 HOH HOH . I 3 HOH A 4 76 4 HOH HOH . I 3 HOH A 5 77 5 HOH HOH . I 3 HOH A 6 78 6 HOH HOH . I 3 HOH A 7 79 7 HOH HOH . I 3 HOH A 8 80 23 HOH HOH . I 3 HOH A 9 81 24 HOH HOH . I 3 HOH A 10 82 25 HOH HOH . I 3 HOH A 11 83 29 HOH HOH . I 3 HOH A 12 84 36 HOH HOH . J 3 HOH B 1 75 9 HOH HOH . J 3 HOH B 2 76 22 HOH HOH . K 3 HOH C 1 73 10 HOH HOH . K 3 HOH C 2 74 37 HOH HOH . L 3 HOH D 1 73 11 HOH HOH . L 3 HOH D 2 74 12 HOH HOH . L 3 HOH D 3 75 13 HOH HOH . L 3 HOH D 4 76 14 HOH HOH . L 3 HOH D 5 77 15 HOH HOH . L 3 HOH D 6 78 38 HOH HOH . M 3 HOH E 1 73 31 HOH HOH . N 3 HOH F 1 73 16 HOH HOH . N 3 HOH F 2 74 17 HOH HOH . N 3 HOH F 3 75 18 HOH HOH . N 3 HOH F 4 76 19 HOH HOH . N 3 HOH F 5 77 20 HOH HOH . N 3 HOH F 6 78 21 HOH HOH . N 3 HOH F 7 79 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . H 2 24.664 65.731 66.206 1 73.39 ? C ACY 74 B 1 HETATM 2 O O ACY . . . H 2 25.029 66.708 65.535 1 69.25 ? O ACY 74 B 1 HETATM 3 O OXT ACY . . . H 2 23.636 65.88 67.141 1 76.2 ? OXT ACY 74 B 1 HETATM 4 C CH3 ACY . . . H 2 25.389 64.411 66.077 1 60.97 ? CH3 ACY 74 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #