data_3KVT # _model_server_result.job_id yLW6sXr32egkjUMpJOI59Q _model_server_result.datetime_utc '2024-11-01 05:36:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kvt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":179}' # _entry.id 3KVT # _exptl.entry_id 3KVT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KVT _cell.length_a 67.191 _cell.length_b 67.191 _cell.length_c 138.9 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KVT _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,-y,z -1 0 0 0 -1 0 0 0 1 134.382 0 0 3 'crystal symmetry operation' 3_645 -y+1,x-1,z 0 -1 0 1 0 0 0 0 1 67.191 -67.191 0 4 'crystal symmetry operation' 4_665 y+1,-x+1,z 0 1 0 -1 0 0 0 0 1 67.191 67.191 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 70 A HIS 75 1_555 B ZN ZN . A ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 A SG CYS 76 A CYS 81 4_665 B ZN ZN . A ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc3 A SG CYS 97 A CYS 102 1_555 B ZN ZN . A ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc4 A SG CYS 98 A CYS 103 1_555 B ZN ZN . A ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3KVT _atom_sites.fract_transf_matrix[1][1] 0.014883 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007199 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 179 179 ZN ZN . C 3 HOH A 1 180 112 HOH HOH . C 3 HOH A 2 181 113 HOH HOH . C 3 HOH A 3 182 114 HOH HOH . C 3 HOH A 4 183 115 HOH HOH . C 3 HOH A 5 184 116 HOH HOH . C 3 HOH A 6 185 117 HOH HOH . C 3 HOH A 7 186 118 HOH HOH . C 3 HOH A 8 187 119 HOH HOH . C 3 HOH A 9 188 120 HOH HOH . C 3 HOH A 10 189 121 HOH HOH . C 3 HOH A 11 190 122 HOH HOH . C 3 HOH A 12 191 123 HOH HOH . C 3 HOH A 13 192 124 HOH HOH . C 3 HOH A 14 193 125 HOH HOH . C 3 HOH A 15 194 126 HOH HOH . C 3 HOH A 16 195 127 HOH HOH . C 3 HOH A 17 196 128 HOH HOH . C 3 HOH A 18 197 129 HOH HOH . C 3 HOH A 19 198 130 HOH HOH . C 3 HOH A 20 199 131 HOH HOH . C 3 HOH A 21 200 132 HOH HOH . C 3 HOH A 22 201 133 HOH HOH . C 3 HOH A 23 202 134 HOH HOH . C 3 HOH A 24 203 135 HOH HOH . C 3 HOH A 25 204 136 HOH HOH . C 3 HOH A 26 205 137 HOH HOH . C 3 HOH A 27 206 138 HOH HOH . C 3 HOH A 28 207 139 HOH HOH . C 3 HOH A 29 208 140 HOH HOH . C 3 HOH A 30 209 141 HOH HOH . C 3 HOH A 31 210 142 HOH HOH . C 3 HOH A 32 211 143 HOH HOH . C 3 HOH A 33 212 144 HOH HOH . C 3 HOH A 34 213 145 HOH HOH . C 3 HOH A 35 214 146 HOH HOH . C 3 HOH A 36 215 147 HOH HOH . C 3 HOH A 37 216 148 HOH HOH . C 3 HOH A 38 217 149 HOH HOH . C 3 HOH A 39 218 150 HOH HOH . C 3 HOH A 40 219 151 HOH HOH . C 3 HOH A 41 220 152 HOH HOH . C 3 HOH A 42 221 153 HOH HOH . C 3 HOH A 43 222 154 HOH HOH . C 3 HOH A 44 223 155 HOH HOH . C 3 HOH A 45 224 156 HOH HOH . C 3 HOH A 46 225 157 HOH HOH . C 3 HOH A 47 226 158 HOH HOH . C 3 HOH A 48 227 159 HOH HOH . C 3 HOH A 49 228 160 HOH HOH . C 3 HOH A 50 229 161 HOH HOH . C 3 HOH A 51 230 162 HOH HOH . C 3 HOH A 52 231 163 HOH HOH . C 3 HOH A 53 232 164 HOH HOH . C 3 HOH A 54 233 165 HOH HOH . C 3 HOH A 55 234 166 HOH HOH . C 3 HOH A 56 235 167 HOH HOH . C 3 HOH A 57 236 168 HOH HOH . C 3 HOH A 58 237 169 HOH HOH . C 3 HOH A 59 238 170 HOH HOH . C 3 HOH A 60 239 171 HOH HOH . C 3 HOH A 61 240 172 HOH HOH . C 3 HOH A 62 241 173 HOH HOH . C 3 HOH A 63 242 174 HOH HOH . C 3 HOH A 64 243 175 HOH HOH . C 3 HOH A 65 244 176 HOH HOH . C 3 HOH A 66 245 177 HOH HOH . C 3 HOH A 67 246 178 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 61.649 _atom_site.Cartn_y -12.193 _atom_site.Cartn_z 80.131 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 179 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #