data_3KVW # _model_server_result.job_id q6UW0xv38dfRHL1pX1hROA _model_server_result.datetime_utc '2024-11-27 04:17:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3KVW # _exptl.entry_id 3KVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.183 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2Z,3E)-7'-bromo-3-(hydroxyimino)-2'-oxo-1,1',2',3-tetrahydro-2,3'-biindole-5-carboxylic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KVW _cell.length_a 84.28 _cell.length_b 84.28 _cell.length_c 149.12 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 7 A HIS -15 1_555 A N SEP 8 A SEP -14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C SEP 8 A SEP -14 1_555 A N SER 9 A SER -13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 A C THR 258 A THR 308 1_555 A N PTR 259 A PTR 309 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.32 ? covale ? covale4 A C THR 258 A THR 308 1_555 A N PTR 259 A PTR 309 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.343 ? covale ? covale5 A C PTR 259 A PTR 309 1_555 A N ILE 260 A ILE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C SER 334 A SER 384 1_555 A N SEP 335 A SEP 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C SEP 335 A SEP 385 1_555 A N LYS 336 A LYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C17 H10 Br N3 O4' _chem_comp.formula_weight 400.183 _chem_comp.id IRB _chem_comp.mon_nstd_flag . _chem_comp.name "(2Z,3E)-7'-bromo-3-(hydroxyimino)-2'-oxo-1,1',2',3-tetrahydro-2,3'-biindole-5-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "Indirubin-3'-monoxime derivative, (2Z,3E)-7'-bromo-3-(hydroxyimino)-2'-oxo-[2,3'-biindolinylidene]-5-carboxylic acid" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CAO IRB doub 173 n n OAB CAR IRB doub 174 n n OAC NAL IRB sing 175 n n OAD CAO IRB sing 176 n n BRAE CAQ IRB sing 177 n n CAF CAG IRB doub 178 n y CAF CAI IRB sing 179 n y CAG CAQ IRB sing 180 n y CAH CAJ IRB doub 181 n y CAH CAP IRB sing 182 n y CAI CAW IRB doub 183 n y CAJ CAV IRB sing 184 n y CAK CAP IRB doub 185 n y CAK CAX IRB sing 186 n y NAL CAT IRB doub 187 n n NAM CAR IRB sing 188 n n NAM CAY IRB sing 189 n n NAN CAS IRB sing 190 n n NAN CAV IRB sing 191 n n CAO CAP IRB sing 192 n n CAQ CAY IRB doub 193 n y CAR CAU IRB sing 194 n n CAS CAT IRB sing 195 e n CAS CAU IRB doub 196 n n CAT CAX IRB sing 197 n n CAU CAW IRB sing 198 n n CAV CAX IRB doub 199 n y CAW CAY IRB sing 200 n y OAC HOAC IRB sing 201 n n CAF HAF IRB sing 202 n n CAG HAG IRB sing 203 n n CAH HAH IRB sing 204 n n CAI HAI IRB sing 205 n n CAJ HAJ IRB sing 206 z n CAK HAK IRB sing 207 n n NAM HNAM IRB sing 208 n n NAN HNAN IRB sing 209 n n OAD HOAD IRB sing 210 n n # _atom_sites.entry_id 3KVW _atom_sites.fract_transf_matrix[1][1] 0.011865 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011865 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IRB A 1 1 1 IRB IRB . C 3 CL A 1 480 1 CL CL . D 3 CL A 1 2 2 CL CL . E 3 CL A 1 3 3 CL CL . F 3 CL A 1 4 4 CL CL . G 4 HOH A 1 5 5 HOH HOH . G 4 HOH A 2 6 6 HOH HOH . G 4 HOH A 3 7 7 HOH HOH . G 4 HOH A 4 8 8 HOH HOH . G 4 HOH A 5 9 9 HOH HOH . G 4 HOH A 6 10 10 HOH HOH . G 4 HOH A 7 11 11 HOH HOH . G 4 HOH A 8 12 12 HOH HOH . G 4 HOH A 9 13 13 HOH HOH . G 4 HOH A 10 14 14 HOH HOH . G 4 HOH A 11 15 15 HOH HOH . G 4 HOH A 12 16 16 HOH HOH . G 4 HOH A 13 17 17 HOH HOH . G 4 HOH A 14 18 18 HOH HOH . G 4 HOH A 15 19 19 HOH HOH . G 4 HOH A 16 20 20 HOH HOH . G 4 HOH A 17 21 21 HOH HOH . G 4 HOH A 18 22 22 HOH HOH . G 4 HOH A 19 23 23 HOH HOH . G 4 HOH A 20 25 25 HOH HOH . G 4 HOH A 21 26 26 HOH HOH . G 4 HOH A 22 27 27 HOH HOH . G 4 HOH A 23 28 28 HOH HOH . G 4 HOH A 24 29 29 HOH HOH . G 4 HOH A 25 30 30 HOH HOH . G 4 HOH A 26 31 31 HOH HOH . G 4 HOH A 27 32 32 HOH HOH . G 4 HOH A 28 33 33 HOH HOH . G 4 HOH A 29 34 34 HOH HOH . G 4 HOH A 30 35 35 HOH HOH . G 4 HOH A 31 36 36 HOH HOH . G 4 HOH A 32 37 37 HOH HOH . G 4 HOH A 33 38 38 HOH HOH . G 4 HOH A 34 39 39 HOH HOH . G 4 HOH A 35 40 40 HOH HOH . G 4 HOH A 36 41 41 HOH HOH . G 4 HOH A 37 42 42 HOH HOH . G 4 HOH A 38 43 43 HOH HOH . G 4 HOH A 39 44 44 HOH HOH . G 4 HOH A 40 45 45 HOH HOH . G 4 HOH A 41 46 46 HOH HOH . G 4 HOH A 42 47 47 HOH HOH . G 4 HOH A 43 48 48 HOH HOH . G 4 HOH A 44 49 49 HOH HOH . G 4 HOH A 45 50 50 HOH HOH . G 4 HOH A 46 51 51 HOH HOH . G 4 HOH A 47 52 52 HOH HOH . G 4 HOH A 48 53 53 HOH HOH . G 4 HOH A 49 54 54 HOH HOH . G 4 HOH A 50 55 55 HOH HOH . G 4 HOH A 51 56 56 HOH HOH . G 4 HOH A 52 57 57 HOH HOH . G 4 HOH A 53 58 58 HOH HOH . G 4 HOH A 54 59 59 HOH HOH . G 4 HOH A 55 60 60 HOH HOH . G 4 HOH A 56 61 61 HOH HOH . G 4 HOH A 57 62 62 HOH HOH . G 4 HOH A 58 63 63 HOH HOH . G 4 HOH A 59 64 64 HOH HOH . G 4 HOH A 60 65 65 HOH HOH . G 4 HOH A 61 66 66 HOH HOH . G 4 HOH A 62 67 67 HOH HOH . G 4 HOH A 63 68 68 HOH HOH . G 4 HOH A 64 69 69 HOH HOH . G 4 HOH A 65 70 70 HOH HOH . G 4 HOH A 66 71 71 HOH HOH . G 4 HOH A 67 72 72 HOH HOH . G 4 HOH A 68 481 1 HOH HOH . G 4 HOH A 69 482 2 HOH HOH . G 4 HOH A 70 483 3 HOH HOH . G 4 HOH A 71 484 4 HOH HOH . G 4 HOH A 72 485 73 HOH HOH . G 4 HOH A 73 486 74 HOH HOH . G 4 HOH A 74 487 75 HOH HOH . G 4 HOH A 75 488 76 HOH HOH . G 4 HOH A 76 489 77 HOH HOH . G 4 HOH A 77 490 78 HOH HOH . G 4 HOH A 78 491 80 HOH HOH . G 4 HOH A 79 492 81 HOH HOH . G 4 HOH A 80 493 82 HOH HOH . G 4 HOH A 81 494 83 HOH HOH . G 4 HOH A 82 495 84 HOH HOH . G 4 HOH A 83 496 85 HOH HOH . G 4 HOH A 84 497 86 HOH HOH . G 4 HOH A 85 498 87 HOH HOH . G 4 HOH A 86 499 88 HOH HOH . G 4 HOH A 87 500 89 HOH HOH . G 4 HOH A 88 501 90 HOH HOH . G 4 HOH A 89 502 91 HOH HOH . G 4 HOH A 90 503 92 HOH HOH . G 4 HOH A 91 504 94 HOH HOH . G 4 HOH A 92 505 95 HOH HOH . G 4 HOH A 93 506 96 HOH HOH . G 4 HOH A 94 507 97 HOH HOH . G 4 HOH A 95 508 98 HOH HOH . G 4 HOH A 96 509 99 HOH HOH . G 4 HOH A 97 510 100 HOH HOH . G 4 HOH A 98 511 101 HOH HOH . G 4 HOH A 99 512 103 HOH HOH . G 4 HOH A 100 513 104 HOH HOH . G 4 HOH A 101 514 105 HOH HOH . G 4 HOH A 102 515 106 HOH HOH . G 4 HOH A 103 516 107 HOH HOH . G 4 HOH A 104 517 108 HOH HOH . G 4 HOH A 105 518 109 HOH HOH . G 4 HOH A 106 519 110 HOH HOH . G 4 HOH A 107 520 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA IRB . . . B 2 27.886 -32.89 19.179 1 33.46 ? OAA IRB 1 A 1 HETATM 2 O OAB IRB . . . B 2 21.158 -32.818 24.939 1 30.47 ? OAB IRB 1 A 1 HETATM 3 O OAC IRB . . . B 2 23.098 -33.3 18.904 1 44.99 ? OAC IRB 1 A 1 HETATM 4 O OAD IRB . . . B 2 28.817 -32.147 21.091 1 29.85 ? OAD IRB 1 A 1 HETATM 5 BR BRAE IRB . . . B 2 15.94 -32.094 23.718 0.75 37.83 ? BRAE IRB 1 A 1 HETATM 6 C CAF IRB . . . B 2 17.954 -33.128 20.11 1 44.32 ? CAF IRB 1 A 1 HETATM 7 C CAG IRB . . . B 2 16.94 -32.779 21.028 1 35.48 ? CAG IRB 1 A 1 HETATM 8 C CAH IRB . . . B 2 26.714 -32.964 22.586 1 37.19 ? CAH IRB 1 A 1 HETATM 9 C CAI IRB . . . B 2 19.304 -33.281 20.521 1 40.23 ? CAI IRB 1 A 1 HETATM 10 C CAJ IRB . . . B 2 25.577 -33.053 23.377 1 31.59 ? CAJ IRB 1 A 1 HETATM 11 C CAK IRB . . . B 2 25.341 -32.97 20.573 1 33.5 ? CAK IRB 1 A 1 HETATM 12 N NAL IRB . . . B 2 22.286 -33.083 19.96 1 44.68 ? NAL IRB 1 A 1 HETATM 13 N NAM IRB . . . B 2 19.081 -32.606 24.005 1 30.65 ? NAM IRB 1 A 1 HETATM 14 N NAN IRB . . . B 2 23.13 -33.196 23.352 1 29.45 ? NAN IRB 1 A 1 HETATM 15 C CAO IRB . . . B 2 27.898 -32.725 20.423 1 41.15 ? CAO IRB 1 A 1 HETATM 16 C CAP IRB . . . B 2 26.6 -32.923 21.201 1 27.08 ? CAP IRB 1 A 1 HETATM 17 C CAQ IRB . . . B 2 17.257 -32.605 22.384 1 31.56 ? CAQ IRB 1 A 1 HETATM 18 C CAR IRB . . . B 2 20.395 -32.837 23.956 1 32.76 ? CAR IRB 1 A 1 HETATM 19 C CAS IRB . . . B 2 22.173 -33.3 22.404 1 28.08 ? CAS IRB 1 A 1 HETATM 20 C CAT IRB . . . B 2 22.831 -33.114 21.177 1 41.43 ? CAT IRB 1 A 1 HETATM 21 C CAU IRB . . . B 2 20.796 -33.203 22.66 1 26.43 ? CAU IRB 1 A 1 HETATM 22 C CAV IRB . . . B 2 24.328 -33.118 22.788 1 32.65 ? CAV IRB 1 A 1 HETATM 23 C CAW IRB . . . B 2 19.635 -33.067 21.864 1 27.25 ? CAW IRB 1 A 1 HETATM 24 C CAX IRB . . . B 2 24.199 -33.065 21.398 1 39.7 ? CAX IRB 1 A 1 HETATM 25 C CAY IRB . . . B 2 18.584 -32.74 22.781 1 32.75 ? CAY IRB 1 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 389 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #