data_3KVX # _model_server_result.job_id 4bdaNFNVvU76kJHLtHNgFQ _model_server_result.datetime_utc '2025-09-04 02:56:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kvx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":403}' # _entry.id 3KVX # _exptl.entry_id 3KVX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 502.543 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2Z)-4-(3-fluoro-5-morpholin-4-ylphenyl)pyrimidin-2(1H)-ylidene]-4-(3-morpholin-4-yl-1H-1,2,4-triazol-1-yl)aniline _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KVX _cell.length_a 81.362 _cell.length_b 125.642 _cell.length_c 68.744 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KVX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 115 A LEU 153 1_555 A N OCY 116 A OCY 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale2 A C OCY 116 A OCY 154 1_555 A N GLN 117 A GLN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale3 A C LEU 136 A LEU 174 1_555 A N OCY 137 A OCY 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale4 A C OCY 137 A OCY 175 1_555 A N GLY 138 A GLY 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C ASP 162 A ASP 200 1_555 A N OCY 163 A OCY 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale6 A C OCY 163 A OCY 201 1_555 A N THR 164 A THR 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C26 H27 F N8 O2' _chem_comp.formula_weight 502.543 _chem_comp.id FMY _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2Z)-4-(3-fluoro-5-morpholin-4-ylphenyl)pyrimidin-2(1H)-ylidene]-4-(3-morpholin-4-yl-1H-1,2,4-triazol-1-yl)aniline _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C03 FMY doub 83 n y C01 C23 FMY sing 84 n y C01 H01 FMY sing 85 n n C02 C04 FMY sing 86 n y C02 C23 FMY doub 87 n y C02 H02 FMY sing 88 n n C03 C26 FMY sing 89 n y C03 H03 FMY sing 90 n n C04 C26 FMY doub 91 n y C04 H04 FMY sing 92 n n C05 N17 FMY doub 93 n y C05 N30 FMY sing 94 n y C05 H05 FMY sing 95 n n C06 C22 FMY doub 96 n y C06 C24 FMY sing 97 n y C06 H06 FMY sing 98 n n C07 C22 FMY sing 99 n y C07 C25 FMY doub 100 n y C07 H07 FMY sing 101 n n C08 C24 FMY doub 102 n y C08 C25 FMY sing 103 n y C08 H08 FMY sing 104 n n C09 C13 FMY sing 105 n n C09 O20 FMY sing 106 n n C09 H09 FMY sing 107 n n C09 H09A FMY sing 108 n n C10 C14 FMY sing 109 n n C10 O20 FMY sing 110 n n C10 H10 FMY sing 111 n n C10 H10A FMY sing 112 n n C11 C15 FMY sing 113 n n C11 O21 FMY sing 114 n n C11 H11 FMY sing 115 n n C11 H11A FMY sing 116 n n C12 C16 FMY sing 117 n n C12 O21 FMY sing 118 n n C12 H12 FMY sing 119 n n C12 H12A FMY sing 120 n n C13 N28 FMY sing 121 n n C13 H13 FMY sing 122 n n C13 H13A FMY sing 123 n n C14 N28 FMY sing 124 n n C14 H14 FMY sing 125 n n C14 H14A FMY sing 126 n n C15 N29 FMY sing 127 n n C15 H15 FMY sing 128 n n C15 H15A FMY sing 129 n n C16 N29 FMY sing 130 n n C16 H16 FMY sing 131 n n C16 H16A FMY sing 132 n n N17 C27 FMY sing 133 n y N18 C27 FMY doub 134 n y N18 N30 FMY sing 135 n y N19 C23 FMY sing 136 n n N19 C31 FMY doub 137 n n C22 F37 FMY sing 138 n n C24 C33 FMY sing 139 n n C25 N28 FMY sing 140 n n C26 N30 FMY sing 141 n y C27 N29 FMY sing 142 n n C31 N31 FMY sing 143 n n C31 N32 FMY sing 144 n n N31 C35 FMY sing 145 n n N31 HN31 FMY sing 146 n n N32 C33 FMY doub 147 n n C33 C34 FMY sing 148 n n C34 C35 FMY doub 149 n n C34 H34 FMY sing 150 n n C35 H35 FMY sing 151 n n # _atom_sites.entry_id 3KVX _atom_sites.fract_transf_matrix[1][1] 0.012291 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMY A 1 403 100 FMY FMY . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 6 6 HOH HOH . C 3 HOH A 5 7 7 HOH HOH . C 3 HOH A 6 8 8 HOH HOH . C 3 HOH A 7 12 12 HOH HOH . C 3 HOH A 8 16 16 HOH HOH . C 3 HOH A 9 32 32 HOH HOH . C 3 HOH A 10 33 33 HOH HOH . C 3 HOH A 11 37 37 HOH HOH . C 3 HOH A 12 38 38 HOH HOH . C 3 HOH A 13 404 41 HOH HOH . C 3 HOH A 14 405 43 HOH HOH . C 3 HOH A 15 406 44 HOH HOH . C 3 HOH A 16 407 45 HOH HOH . C 3 HOH A 17 408 46 HOH HOH . C 3 HOH A 18 409 47 HOH HOH . C 3 HOH A 19 410 48 HOH HOH . C 3 HOH A 20 411 49 HOH HOH . C 3 HOH A 21 412 50 HOH HOH . C 3 HOH A 22 413 51 HOH HOH . C 3 HOH A 23 414 52 HOH HOH . C 3 HOH A 24 415 53 HOH HOH . C 3 HOH A 25 416 54 HOH HOH . C 3 HOH A 26 417 55 HOH HOH . C 3 HOH A 27 418 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 FMY . . . B 2 -27.388 34.842 11.76 1 73.4 ? C01 FMY 403 A 1 HETATM 2 C C02 FMY . . . B 2 -26.158 35.927 9.944 1 75.27 ? C02 FMY 403 A 1 HETATM 3 C C03 FMY . . . B 2 -26.111 34.445 12.241 1 82.87 ? C03 FMY 403 A 1 HETATM 4 C C04 FMY . . . B 2 -24.94 35.45 10.398 1 78.22 ? C04 FMY 403 A 1 HETATM 5 C C05 FMY . . . B 2 -23.669 33.428 13.093 1 94.67 ? C05 FMY 403 A 1 HETATM 6 C C06 FMY . . . B 2 -32.174 32.86 13.516 1 71.65 ? C06 FMY 403 A 1 HETATM 7 C C07 FMY . . . B 2 -30.498 31.739 14.919 1 73.96 ? C07 FMY 403 A 1 HETATM 8 C C08 FMY . . . B 2 -29.779 33.118 13.08 1 69.74 ? C08 FMY 403 A 1 HETATM 9 C C09 FMY . . . B 2 -26.109 33.495 14.314 1 69.27 ? C09 FMY 403 A 1 HETATM 10 C C10 FMY . . . B 2 -26.128 31.01 14.141 1 74.98 ? C10 FMY 403 A 1 HETATM 11 C C11 FMY . . . B 2 -18.547 31.758 12.381 1 111.35 ? C11 FMY 403 A 1 HETATM 12 C C12 FMY . . . B 2 -18.337 33.324 10.548 1 111.14 ? C12 FMY 403 A 1 HETATM 13 C C13 FMY . . . B 2 -27.559 33.396 14.76 1 75.05 ? C13 FMY 403 A 1 HETATM 14 C C14 FMY . . . B 2 -27.424 31.3 13.429 1 73.4 ? C14 FMY 403 A 1 HETATM 15 C C15 FMY . . . B 2 -19.559 32.733 13.031 1 110.49 ? C15 FMY 403 A 1 HETATM 16 C C16 FMY . . . B 2 -19.586 34.163 10.916 1 108.69 ? C16 FMY 403 A 1 HETATM 17 N N17 FMY . . . B 2 -22.355 33.095 13.216 1 101.84 ? N17 FMY 403 A 1 HETATM 18 N N18 FMY . . . B 2 -22.506 34.39 11.372 1 98.85 ? N18 FMY 403 A 1 HETATM 19 N N19 FMY . . . B 2 -28.479 36.095 10.107 1 70.04 ? N19 FMY 403 A 1 HETATM 20 O O20 FMY . . . B 2 -25.495 32.246 14.613 1 80.51 ? O20 FMY 403 A 1 HETATM 21 O O21 FMY . . . B 2 -18.43 31.942 10.957 1 111.76 ? O21 FMY 403 A 1 HETATM 22 C C22 FMY . . . B 2 -31.817 32.075 14.636 1 72.48 ? C22 FMY 403 A 1 HETATM 23 C C23 FMY . . . B 2 -27.36 35.602 10.613 1 73.11 ? C23 FMY 403 A 1 HETATM 24 C C24 FMY . . . B 2 -31.101 33.351 12.721 1 68.23 ? C24 FMY 403 A 1 HETATM 25 C C25 FMY . . . B 2 -29.483 32.233 14.099 1 73.85 ? C25 FMY 403 A 1 HETATM 26 C C26 FMY . . . B 2 -24.875 34.675 11.576 1 84.28 ? C26 FMY 403 A 1 HETATM 27 C C27 FMY . . . B 2 -21.674 33.73 12.221 1 102.86 ? C27 FMY 403 A 1 HETATM 28 N N28 FMY . . . B 2 -28.147 32.051 14.461 1 75.62 ? N28 FMY 403 A 1 HETATM 29 N N29 FMY . . . B 2 -20.308 33.527 12.026 1 106.42 ? N29 FMY 403 A 1 HETATM 30 N N30 FMY . . . B 2 -23.739 34.154 11.999 1 89.36 ? N30 FMY 403 A 1 HETATM 31 C C31 FMY . . . B 2 -29.671 35.507 10.223 1 63.75 ? C31 FMY 403 A 1 HETATM 32 N N31 FMY . . . B 2 -30.651 35.785 9.299 1 55.5 ? N31 FMY 403 A 1 HETATM 33 N N32 FMY . . . B 2 -29.866 34.751 11.324 1 59.46 ? N32 FMY 403 A 1 HETATM 34 C C33 FMY . . . B 2 -31.095 34.271 11.585 1 56.14 ? C33 FMY 403 A 1 HETATM 35 C C34 FMY . . . B 2 -32.121 34.535 10.756 1 53.55 ? C34 FMY 403 A 1 HETATM 36 C C35 FMY . . . B 2 -31.869 35.337 9.632 1 58.13 ? C35 FMY 403 A 1 HETATM 37 F F37 FMY . . . B 2 -32.691 31.542 15.47 1 78.07 ? F37 FMY 403 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 37 #