data_3KW4 # _model_server_result.job_id N2Q5cPkzlfO058LoFzMzsA _model_server_result.datetime_utc '2025-06-20 16:18:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kw4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 3KW4 # _exptl.entry_id 3KW4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KW4 _cell.length_a 93.5 _cell.length_b 93.5 _cell.length_c 137.07 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KW4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 417 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 436 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 500 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.402 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 432 n n CHA C4D HEM doub 433 n n CHA HHA HEM sing 434 n n CHB C4A HEM sing 435 n n CHB C1B HEM doub 436 n n CHB HHB HEM sing 437 n n CHC C4B HEM sing 438 n n CHC C1C HEM doub 439 n n CHC HHC HEM sing 440 n n CHD C4C HEM doub 441 n n CHD C1D HEM sing 442 n n CHD HHD HEM sing 443 n n C1A C2A HEM doub 444 n y C1A NA HEM sing 445 n y C2A C3A HEM sing 446 n y C2A CAA HEM sing 447 n n C3A C4A HEM doub 448 n y C3A CMA HEM sing 449 n n C4A NA HEM sing 450 n y CMA HMA HEM sing 451 n n CMA HMAA HEM sing 452 n n CMA HMAB HEM sing 453 n n CAA CBA HEM sing 454 n n CAA HAA HEM sing 455 n n CAA HAAA HEM sing 456 n n CBA CGA HEM sing 457 n n CBA HBA HEM sing 458 n n CBA HBAA HEM sing 459 n n CGA O1A HEM doub 460 n n CGA O2A HEM sing 461 n n C1B C2B HEM sing 462 n n C1B NB HEM sing 463 n n C2B C3B HEM doub 464 n n C2B CMB HEM sing 465 n n C3B C4B HEM sing 466 n n C3B CAB HEM sing 467 n n C4B NB HEM doub 468 n n CMB HMB HEM sing 469 n n CMB HMBA HEM sing 470 n n CMB HMBB HEM sing 471 n n CAB CBB HEM doub 472 n n CAB HAB HEM sing 473 n n CBB HBB HEM sing 474 n n CBB HBBA HEM sing 475 n n C1C C2C HEM sing 476 n y C1C NC HEM sing 477 n y C2C C3C HEM doub 478 n y C2C CMC HEM sing 479 n n C3C C4C HEM sing 480 n y C3C CAC HEM sing 481 n n C4C NC HEM sing 482 n y CMC HMC HEM sing 483 n n CMC HMCA HEM sing 484 n n CMC HMCB HEM sing 485 n n CAC CBC HEM doub 486 n n CAC HAC HEM sing 487 n n CBC HBC HEM sing 488 n n CBC HBCA HEM sing 489 n n C1D C2D HEM sing 490 n n C1D ND HEM doub 491 n n C2D C3D HEM doub 492 n n C2D CMD HEM sing 493 n n C3D C4D HEM sing 494 n n C3D CAD HEM sing 495 n n C4D ND HEM sing 496 n n CMD HMD HEM sing 497 n n CMD HMDA HEM sing 498 n n CMD HMDB HEM sing 499 n n CAD CBD HEM sing 500 n n CAD HAD HEM sing 501 n n CAD HADA HEM sing 502 n n CBD CGD HEM sing 503 n n CBD HBD HEM sing 504 n n CBD HBDA HEM sing 505 n n CGD O1D HEM doub 506 n n CGD O2D HEM sing 507 n n O2A H2A HEM sing 508 n n O2D H2D HEM sing 509 n n FE NA HEM sing 510 n n FE NB HEM sing 511 n n FE NC HEM sing 512 n n FE ND HEM sing 513 n n # _atom_sites.entry_id 3KW4 _atom_sites.fract_transf_matrix[1][1] 0.010695 _atom_sites.fract_transf_matrix[1][2] 0.006175 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007296 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 500 500 HEM HEM . C 3 TIC A 1 600 600 TIC TIC . D 4 CM5 A 1 601 601 CM5 CM5 . E 4 CM5 A 1 602 602 CM5 CM5 . F 5 CH0 A 1 603 603 CH0 CH0 . G 6 HOH A 1 1001 1001 HOH HOH . G 6 HOH A 2 1002 1002 HOH HOH . G 6 HOH A 3 1003 1003 HOH HOH . G 6 HOH A 4 1004 1004 HOH HOH . G 6 HOH A 5 1005 1005 HOH HOH . G 6 HOH A 6 1006 1006 HOH HOH . G 6 HOH A 7 1007 1007 HOH HOH . G 6 HOH A 8 1008 1008 HOH HOH . G 6 HOH A 9 1009 1009 HOH HOH . G 6 HOH A 10 1010 1010 HOH HOH . G 6 HOH A 11 1011 1011 HOH HOH . G 6 HOH A 12 1012 1012 HOH HOH . G 6 HOH A 13 1013 1013 HOH HOH . G 6 HOH A 14 1014 1014 HOH HOH . G 6 HOH A 15 1015 1015 HOH HOH . G 6 HOH A 16 1016 1016 HOH HOH . G 6 HOH A 17 1017 1017 HOH HOH . G 6 HOH A 18 1018 1018 HOH HOH . G 6 HOH A 19 1019 1019 HOH HOH . G 6 HOH A 20 1020 1020 HOH HOH . G 6 HOH A 21 1021 1021 HOH HOH . G 6 HOH A 22 1022 1022 HOH HOH . G 6 HOH A 23 1023 1023 HOH HOH . G 6 HOH A 24 1024 1024 HOH HOH . G 6 HOH A 25 1025 1025 HOH HOH . G 6 HOH A 26 1026 1026 HOH HOH . G 6 HOH A 27 1027 1027 HOH HOH . G 6 HOH A 28 1028 1028 HOH HOH . G 6 HOH A 29 1029 1029 HOH HOH . G 6 HOH A 30 1030 1030 HOH HOH . G 6 HOH A 31 1031 1031 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 1.212 28.932 18.158 1 50.2 ? CHA HEM 500 A 1 HETATM 2 C CHB HEM . . . B 2 1.74 33.626 18.999 1 48.94 ? CHB HEM 500 A 1 HETATM 3 C CHC HEM . . . B 2 -1.023 34.901 15.268 1 49.43 ? CHC HEM 500 A 1 HETATM 4 C CHD HEM . . . B 2 -1.155 30.278 14.135 1 49.91 ? CHD HEM 500 A 1 HETATM 5 C C1A HEM . . . B 2 1.58 30.118 18.718 1 48.33 ? C1A HEM 500 A 1 HETATM 6 C C2A HEM . . . B 2 2.42 30.283 19.874 1 50.2 ? C2A HEM 500 A 1 HETATM 7 C C3A HEM . . . B 2 2.561 31.584 20.083 1 47.88 ? C3A HEM 500 A 1 HETATM 8 C C4A HEM . . . B 2 1.829 32.273 19.069 1 46.92 ? C4A HEM 500 A 1 HETATM 9 C CMA HEM . . . B 2 3.359 32.281 21.198 1 44.39 ? CMA HEM 500 A 1 HETATM 10 C CAA HEM . . . B 2 3.047 29.154 20.715 1 53.82 ? CAA HEM 500 A 1 HETATM 11 C CBA HEM . . . B 2 4.09 28.38 19.924 1 53.17 ? CBA HEM 500 A 1 HETATM 12 C CGA HEM . . . B 2 4.651 27.303 20.825 1 61.34 ? CGA HEM 500 A 1 HETATM 13 O O1A HEM . . . B 2 3.908 26.358 21.198 1 58.96 ? O1A HEM 500 A 1 HETATM 14 O O2A HEM . . . B 2 5.857 27.387 21.182 1 66.49 ? O2A HEM 500 A 1 HETATM 15 C C1B HEM . . . B 2 1.015 34.318 18.072 1 48.61 ? C1B HEM 500 A 1 HETATM 16 C C2B HEM . . . B 2 0.95 35.752 18.073 1 48.65 ? C2B HEM 500 A 1 HETATM 17 C C3B HEM . . . B 2 0.183 36.11 17.041 1 42.34 ? C3B HEM 500 A 1 HETATM 18 C C4B HEM . . . B 2 -0.243 34.918 16.376 1 41.52 ? C4B HEM 500 A 1 HETATM 19 C CMB HEM . . . B 2 1.684 36.617 19.123 1 41.39 ? CMB HEM 500 A 1 HETATM 20 C CAB HEM . . . B 2 -0.201 37.519 16.605 1 40.18 ? CAB HEM 500 A 1 HETATM 21 C CBB HEM . . . B 2 -0.017 38.553 17.432 1 49.38 ? CBB HEM 500 A 1 HETATM 22 C C1C HEM . . . B 2 -1.266 33.746 14.593 1 47.93 ? C1C HEM 500 A 1 HETATM 23 C C2C HEM . . . B 2 -1.941 33.612 13.326 1 46.7 ? C2C HEM 500 A 1 HETATM 24 C C3C HEM . . . B 2 -1.977 32.32 13.041 1 47.7 ? C3C HEM 500 A 1 HETATM 25 C C4C HEM . . . B 2 -1.318 31.625 14.106 1 52.18 ? C4C HEM 500 A 1 HETATM 26 C CMC HEM . . . B 2 -2.5 34.78 12.496 1 46.35 ? CMC HEM 500 A 1 HETATM 27 C CAC HEM . . . B 2 -2.57 31.589 11.824 1 49.68 ? CAC HEM 500 A 1 HETATM 28 C CBC HEM . . . B 2 -3.105 32.229 10.792 1 54.45 ? CBC HEM 500 A 1 HETATM 29 C C1D HEM . . . B 2 -0.585 29.551 15.126 1 49.32 ? C1D HEM 500 A 1 HETATM 30 C C2D HEM . . . B 2 -0.668 28.126 15.113 1 52.31 ? C2D HEM 500 A 1 HETATM 31 C C3D HEM . . . B 2 0.066 27.667 16.359 1 47.63 ? C3D HEM 500 A 1 HETATM 32 C C4D HEM . . . B 2 0.516 28.883 16.987 1 47.81 ? C4D HEM 500 A 1 HETATM 33 C CMD HEM . . . B 2 -1.375 27.29 14.04 1 50.74 ? CMD HEM 500 A 1 HETATM 34 C CAD HEM . . . B 2 0.291 26.223 16.812 1 47.28 ? CAD HEM 500 A 1 HETATM 35 C CBD HEM . . . B 2 1.699 25.927 16.31 1 52.13 ? CBD HEM 500 A 1 HETATM 36 C CGD HEM . . . B 2 2.036 24.476 16.48 1 53.59 ? CGD HEM 500 A 1 HETATM 37 O O1D HEM . . . B 2 2.63 23.886 15.543 1 56.78 ? O1D HEM 500 A 1 HETATM 38 O O2D HEM . . . B 2 1.702 23.913 17.546 1 52.94 ? O2D HEM 500 A 1 HETATM 39 N NA HEM . . . B 2 1.234 31.364 18.235 1 46.85 ? NA HEM 500 A 1 HETATM 40 N NB HEM . . . B 2 0.268 33.814 17.022 1 41.22 ? NB HEM 500 A 1 HETATM 41 N NC HEM . . . B 2 -0.883 32.514 15.053 1 51.27 ? NC HEM 500 A 1 HETATM 42 N ND HEM . . . B 2 0.111 29.988 16.241 1 44.92 ? ND HEM 500 A 1 HETATM 43 FE FE HEM . . . B 2 0.273 31.953 16.6 1 50.02 ? FE HEM 500 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #