data_3KW4 # _model_server_result.job_id bCLTA83MzokPLOUn1cgpGg _model_server_result.datetime_utc '2025-06-20 12:58:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kw4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 3KW4 # _exptl.entry_id 3KW4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.573 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KW4 _cell.length_a 93.5 _cell.length_b 93.5 _cell.length_c 137.07 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KW4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 417 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 436 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 500 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.402 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H42 O11' _chem_comp.formula_weight 494.573 _chem_comp.id CM5 _chem_comp.mon_nstd_flag . _chem_comp.name 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE;CYMAL-5' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 CM5 sing 295 n n C7 C6 CM5 sing 296 n n C7 H71 CM5 sing 297 n n C7 H72 CM5 sing 298 n n C8 C9 CM5 sing 299 n n C8 H81 CM5 sing 300 n n C8 H82 CM5 sing 301 n n C9 C10 CM5 sing 302 n n C9 H91 CM5 sing 303 n n C9 H92 CM5 sing 304 n n C10 C11 CM5 sing 305 n n C10 H101 CM5 sing 306 n n C10 H102 CM5 sing 307 n n C11 C6 CM5 sing 308 n n C11 H111 CM5 sing 309 n n C11 H112 CM5 sing 310 n n C6 C5 CM5 sing 311 n n C6 H6 CM5 sing 312 n n C5 C4 CM5 sing 313 n n C5 H51 CM5 sing 314 n n C5 H52 CM5 sing 315 n n C4 C3 CM5 sing 316 n n C4 H41 CM5 sing 317 n n C4 H42 CM5 sing 318 n n C3 C2 CM5 sing 319 n n C3 H31A CM5 sing 320 n n C3 H32A CM5 sing 321 n n C2 C1 CM5 sing 322 n n C2 H21A CM5 sing 323 n n C2 H22A CM5 sing 324 n n C1 O12 CM5 sing 325 n n C1 H11 CM5 sing 326 n n C1 H12 CM5 sing 327 n n O12 C13 CM5 sing 328 n n C13 C18 CM5 sing 329 n n C13 O14 CM5 sing 330 n n C13 H13 CM5 sing 331 n n C18 O22 CM5 sing 332 n n C18 C17 CM5 sing 333 n n C18 H18 CM5 sing 334 n n O22 H22 CM5 sing 335 n n C17 O21 CM5 sing 336 n n C17 C16 CM5 sing 337 n n C17 H17 CM5 sing 338 n n O21 H21 CM5 sing 339 n n O14 C15 CM5 sing 340 n n C15 C19 CM5 sing 341 n n C15 C16 CM5 sing 342 n n C15 H15 CM5 sing 343 n n C19 O20 CM5 sing 344 n n C19 H191 CM5 sing 345 n n C19 H192 CM5 sing 346 n n O20 H20 CM5 sing 347 n n C16 O23 CM5 sing 348 n n C16 H16 CM5 sing 349 n n O23 C24 CM5 sing 350 n n C24 O25 CM5 sing 351 n n C24 C29 CM5 sing 352 n n C24 H24 CM5 sing 353 n n O25 C26 CM5 sing 354 n n C26 C30 CM5 sing 355 n n C26 C27 CM5 sing 356 n n C26 H26 CM5 sing 357 n n C30 O31 CM5 sing 358 n n C30 H301 CM5 sing 359 n n C30 H302 CM5 sing 360 n n O31 H31 CM5 sing 361 n n C27 O32 CM5 sing 362 n n C27 C28 CM5 sing 363 n n C27 H27 CM5 sing 364 n n O32 H32 CM5 sing 365 n n C28 O33 CM5 sing 366 n n C28 C29 CM5 sing 367 n n C28 H28 CM5 sing 368 n n O33 H33 CM5 sing 369 n n C29 O34 CM5 sing 370 n n C29 H29 CM5 sing 371 n n O34 H34 CM5 sing 372 n n # _atom_sites.entry_id 3KW4 _atom_sites.fract_transf_matrix[1][1] 0.010695 _atom_sites.fract_transf_matrix[1][2] 0.006175 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007296 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 500 500 HEM HEM . C 3 TIC A 1 600 600 TIC TIC . D 4 CM5 A 1 601 601 CM5 CM5 . E 4 CM5 A 1 602 602 CM5 CM5 . F 5 CH0 A 1 603 603 CH0 CH0 . G 6 HOH A 1 1001 1001 HOH HOH . G 6 HOH A 2 1002 1002 HOH HOH . G 6 HOH A 3 1003 1003 HOH HOH . G 6 HOH A 4 1004 1004 HOH HOH . G 6 HOH A 5 1005 1005 HOH HOH . G 6 HOH A 6 1006 1006 HOH HOH . G 6 HOH A 7 1007 1007 HOH HOH . G 6 HOH A 8 1008 1008 HOH HOH . G 6 HOH A 9 1009 1009 HOH HOH . G 6 HOH A 10 1010 1010 HOH HOH . G 6 HOH A 11 1011 1011 HOH HOH . G 6 HOH A 12 1012 1012 HOH HOH . G 6 HOH A 13 1013 1013 HOH HOH . G 6 HOH A 14 1014 1014 HOH HOH . G 6 HOH A 15 1015 1015 HOH HOH . G 6 HOH A 16 1016 1016 HOH HOH . G 6 HOH A 17 1017 1017 HOH HOH . G 6 HOH A 18 1018 1018 HOH HOH . G 6 HOH A 19 1019 1019 HOH HOH . G 6 HOH A 20 1020 1020 HOH HOH . G 6 HOH A 21 1021 1021 HOH HOH . G 6 HOH A 22 1022 1022 HOH HOH . G 6 HOH A 23 1023 1023 HOH HOH . G 6 HOH A 24 1024 1024 HOH HOH . G 6 HOH A 25 1025 1025 HOH HOH . G 6 HOH A 26 1026 1026 HOH HOH . G 6 HOH A 27 1027 1027 HOH HOH . G 6 HOH A 28 1028 1028 HOH HOH . G 6 HOH A 29 1029 1029 HOH HOH . G 6 HOH A 30 1030 1030 HOH HOH . G 6 HOH A 31 1031 1031 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 CM5 . . . D 4 -5.336 28.652 42.101 1 53.77 ? C7 CM5 601 A 1 HETATM 2 C C8 CM5 . . . D 4 -5.258 28.056 40.698 1 61.96 ? C8 CM5 601 A 1 HETATM 3 C C9 CM5 . . . D 4 -4.946 29.106 39.636 1 61.46 ? C9 CM5 601 A 1 HETATM 4 C C10 CM5 . . . D 4 -3.631 29.784 39.974 1 58.42 ? C10 CM5 601 A 1 HETATM 5 C C11 CM5 . . . D 4 -3.783 30.406 41.356 1 63.55 ? C11 CM5 601 A 1 HETATM 6 C C6 CM5 . . . D 4 -4.043 29.353 42.429 1 55.3 ? C6 CM5 601 A 1 HETATM 7 C C5 CM5 . . . D 4 -4.194 30.034 43.777 1 59.93 ? C5 CM5 601 A 1 HETATM 8 C C4 CM5 . . . D 4 -4.418 29.004 44.863 1 58.25 ? C4 CM5 601 A 1 HETATM 9 C C3 CM5 . . . D 4 -4.521 29.693 46.208 1 61.93 ? C3 CM5 601 A 1 HETATM 10 C C2 CM5 . . . D 4 -3.161 29.697 46.857 1 63.21 ? C2 CM5 601 A 1 HETATM 11 C C1 CM5 . . . D 4 -3.079 30.895 47.771 1 74.39 ? C1 CM5 601 A 1 HETATM 12 O O12 CM5 . . . D 4 -1.766 30.934 48.32 1 88.64 ? O12 CM5 601 A 1 HETATM 13 C C13 CM5 . . . D 4 -1.843 31.24 49.7 1 90.16 ? C13 CM5 601 A 1 HETATM 14 C C18 CM5 . . . D 4 -2.133 29.922 50.367 1 82.4 ? C18 CM5 601 A 1 HETATM 15 O O22 CM5 . . . D 4 -3.304 29.364 49.786 1 83.21 ? O22 CM5 601 A 1 HETATM 16 C C17 CM5 . . . D 4 -2.367 30.259 51.809 1 91.64 ? C17 CM5 601 A 1 HETATM 17 O O21 CM5 . . . D 4 -3.005 29.16 52.469 1 92.07 ? O21 CM5 601 A 1 HETATM 18 O O14 CM5 . . . D 4 -0.619 31.769 50.201 1 94.66 ? O14 CM5 601 A 1 HETATM 19 C C15 CM5 . . . D 4 -0.607 31.939 51.624 1 101.6 ? C15 CM5 601 A 1 HETATM 20 C C19 CM5 . . . D 4 0.778 32.457 52.028 1 114.47 ? C19 CM5 601 A 1 HETATM 21 O O20 CM5 . . . D 4 1.301 33.36 51.032 1 103.69 ? O20 CM5 601 A 1 HETATM 22 C C16 CM5 . . . D 4 -0.971 30.614 52.295 1 99.19 ? C16 CM5 601 A 1 HETATM 23 O O23 CM5 . . . D 4 -0.923 30.693 53.717 1 110.22 ? O23 CM5 601 A 1 HETATM 24 C C24 CM5 . . . D 4 -0.216 29.563 54.239 1 118.47 ? C24 CM5 601 A 1 HETATM 25 O O25 CM5 . . . D 4 0.948 30.036 54.95 1 122.31 ? O25 CM5 601 A 1 HETATM 26 C C26 CM5 . . . D 4 1.508 29.213 55.998 1 127.1 ? C26 CM5 601 A 1 HETATM 27 C C30 CM5 . . . D 4 2.378 28.11 55.397 1 124.51 ? C30 CM5 601 A 1 HETATM 28 O O31 CM5 . . . D 4 3.752 28.512 55.448 1 122.99 ? O31 CM5 601 A 1 HETATM 29 C C27 CM5 . . . D 4 0.459 28.631 56.958 1 127.9 ? C27 CM5 601 A 1 HETATM 30 O O32 CM5 . . . D 4 0.77 28.974 58.317 1 127.38 ? O32 CM5 601 A 1 HETATM 31 C C28 CM5 . . . D 4 -0.925 29.14 56.575 1 126.29 ? C28 CM5 601 A 1 HETATM 32 O O33 CM5 . . . D 4 -1.964 28.59 57.399 1 120.54 ? O33 CM5 601 A 1 HETATM 33 C C29 CM5 . . . D 4 -1.119 28.712 55.135 1 122.88 ? C29 CM5 601 A 1 HETATM 34 O O34 CM5 . . . D 4 -2.507 28.766 54.767 1 117.16 ? O34 CM5 601 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 34 #