data_3KW5 # _model_server_result.job_id 2XogyJ9YIZBg5QdjmKpRaw _model_server_result.datetime_utc '2025-02-24 23:26:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kw5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":76}' # _entry.id 3KW5 # _exptl.entry_id 3KW5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 117.146 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'METHYL 4-AMINOBUTANOATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KW5 _cell.length_a 86.989 _cell.length_b 86.989 _cell.length_c 193.434 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KW5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 95 A CYS 90 1_555 C CB GVE . B GVE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? covale ? covale2 B C GLY 75 B GLY 75 1_555 C N GVE . B GVE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.27 ? # _chem_comp.formula 'C5 H11 N O2' _chem_comp.formula_weight 117.146 _chem_comp.id GVE _chem_comp.mon_nstd_flag . _chem_comp.name 'METHYL 4-AMINOBUTANOATE' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C1 GVE sing 129 n n N H GVE sing 130 n n N H2 GVE sing 131 n n C1 CB GVE sing 132 n n C1 HA1 GVE sing 133 n n C1 HA2 GVE sing 134 n n CB CG GVE sing 135 n n CB HB1 GVE sing 136 n n CB HB2 GVE sing 137 n n CG C GVE sing 138 n n CG HG1 GVE sing 139 n n CG HG2 GVE sing 140 n n C OXT GVE sing 141 n n C O GVE doub 142 n n OXT CH3 GVE sing 143 n n CH3 HH31 GVE sing 144 n n CH3 HH32 GVE sing 145 n n CH3 HH33 GVE sing 146 n n # _atom_sites.entry_id 3KW5 _atom_sites.fract_transf_matrix[1][1] 0.011496 _atom_sites.fract_transf_matrix[1][2] 0.006637 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013274 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id GVE _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 76 _pdbx_nonpoly_scheme.auth_seq_num 76 _pdbx_nonpoly_scheme.pdb_mon_id GVE _pdbx_nonpoly_scheme.auth_mon_id GVE _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GVE . . . C 3 37.663 44.56 72.641 1 65.53 ? N GVE 76 B 1 HETATM 2 C C1 GVE . . . C 3 38.99 43.977 72.471 1 69.12 ? C1 GVE 76 B 1 HETATM 3 C CB GVE . . . C 3 40.031 45.001 72.016 1 69.37 ? CB GVE 76 B 1 HETATM 4 C CG GVE . . . C 3 39.851 45.494 70.573 1 74.64 ? CG GVE 76 B 1 HETATM 5 C C GVE . . . C 3 39.551 44.391 69.574 1 77.17 ? C GVE 76 B 1 HETATM 6 O OXT GVE . . . C 3 38.255 44.358 68.892 1 79.17 ? OXT GVE 76 B 1 HETATM 7 O O GVE . . . C 3 40.388 43.533 69.32 1 78.31 ? O GVE 76 B 1 HETATM 8 C CH3 GVE . . . C 3 37.204 43.478 69.31 1 79.02 ? CH3 GVE 76 B 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #