data_3KW7 # _model_server_result.job_id qXlrDWjRxuCauZ1H4boC8w _model_server_result.datetime_utc '2024-11-05 00:20:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kw7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":701}' # _entry.id 3KW7 # _exptl.entry_id 3KW7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KW7 _cell.length_a 98.778 _cell.length_b 98.778 _cell.length_c 149.96 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KW7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G,H,I,J,K,L,S 1 1 B,E,F,M,N,O,P,Q,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 L N N ? 4 Q N N ? 4 R N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 702 NAG 2 n C NAG 2 C 2 NAG A 703 NAG 2 n D NAG 1 D 1 NAG A 704 NAG 2 n D NAG 2 D 2 NAG A 705 NAG 2 n E NAG 1 E 1 NAG B 701 NAG 2 n E NAG 2 E 2 NAG B 702 NAG 2 n F NAG 1 F 1 NAG B 703 NAG 2 n F NAG 2 F 2 NAG B 704 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 85 A CYS 85 1_555 A SG CYS 491 A CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 117 A CYS 117 1_555 A SG CYS 205 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf3 B SG CYS 85 B CYS 85 1_555 B SG CYS 491 B CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf4 B SG CYS 117 B CYS 117 1_555 B SG CYS 205 B CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? covale ? covale1 A ND2 ASN 54 A ASN 54 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 A ND2 ASN 333 A ASN 333 1_555 L C1 NAG . A NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 A ND2 ASN 439 A ASN 439 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale4 B ND2 ASN 54 B ASN 54 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale5 B ND2 ASN 333 B ASN 333 1_555 R C1 NAG . B NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale6 B ND2 ASN 439 B ASN 439 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale10 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? metalc ? metalc1 A NE2 HIS 64 A HIS 64 1_555 H CU CU . A CU 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc2 A ND1 HIS 66 A HIS 66 1_555 J CU CU . A CU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc3 A NE2 HIS 109 A HIS 109 1_555 J CU CU . A CU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc4 A NE2 HIS 111 A HIS 111 1_555 I CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc5 A ND1 HIS 400 A HIS 400 1_555 G CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc6 A NE2 HIS 403 A HIS 403 1_555 H CU CU . A CU 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? metalc ? metalc7 A NE2 HIS 405 A HIS 405 1_555 I CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc8 A NE2 HIS 455 A HIS 455 1_555 I CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc9 A SG CYS 456 A CYS 456 1_555 G CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc10 A NE2 HIS 457 A HIS 457 1_555 J CU CU . A CU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc11 A ND1 HIS 461 A HIS 461 1_555 G CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc12 B NE2 HIS 64 B HIS 64 1_555 N CU CU . B CU 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? metalc ? metalc13 B ND1 HIS 66 B HIS 66 1_555 P CU CU . B CU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc14 B NE2 HIS 109 B HIS 109 1_555 P CU CU . B CU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc15 B NE2 HIS 111 B HIS 111 1_555 O CU CU . B CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc16 B ND1 HIS 400 B HIS 400 1_555 M CU CU . B CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc17 B NE2 HIS 403 B HIS 403 1_555 N CU CU . B CU 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? metalc ? metalc18 B NE2 HIS 405 B HIS 405 1_555 O CU CU . B CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? metalc ? metalc19 B NE2 HIS 455 B HIS 455 1_555 O CU CU . B CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? metalc ? metalc20 B SG CYS 456 B CYS 456 1_555 M CU CU . B CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc21 B NE2 HIS 457 B HIS 457 1_555 P CU CU . B CU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? metalc ? metalc22 B ND1 HIS 461 B HIS 461 1_555 M CU CU . B CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3KW7 _atom_sites.fract_transf_matrix[1][1] 0.010124 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 CU A 1 601 601 CU CU . H 3 CU A 1 602 602 CU CU . I 3 CU A 1 603 603 CU CU . J 3 CU A 1 604 604 CU CU . K 4 NAG A 1 701 701 NAG NAG . L 4 NAG A 1 706 706 NAG NAG . M 3 CU B 1 601 601 CU CU . N 3 CU B 1 602 602 CU CU . O 3 CU B 1 603 603 CU CU . P 3 CU B 1 604 604 CU CU . Q 4 NAG B 1 705 705 NAG NAG . R 4 NAG B 1 706 706 NAG NAG . S 5 HOH A 1 503 503 HOH HOH . S 5 HOH A 2 504 504 HOH HOH . S 5 HOH A 3 505 505 HOH HOH . S 5 HOH A 4 506 506 HOH HOH . S 5 HOH A 5 507 507 HOH HOH . S 5 HOH A 6 508 508 HOH HOH . S 5 HOH A 7 509 509 HOH HOH . S 5 HOH A 8 510 510 HOH HOH . S 5 HOH A 9 511 511 HOH HOH . S 5 HOH A 10 512 512 HOH HOH . S 5 HOH A 11 513 513 HOH HOH . S 5 HOH A 12 514 514 HOH HOH . S 5 HOH A 13 515 515 HOH HOH . S 5 HOH A 14 516 516 HOH HOH . S 5 HOH A 15 517 517 HOH HOH . S 5 HOH A 16 518 518 HOH HOH . S 5 HOH A 17 519 519 HOH HOH . S 5 HOH A 18 520 520 HOH HOH . S 5 HOH A 19 521 521 HOH HOH . T 5 HOH B 1 503 503 HOH HOH . T 5 HOH B 2 504 504 HOH HOH . T 5 HOH B 3 505 505 HOH HOH . T 5 HOH B 4 506 506 HOH HOH . T 5 HOH B 5 507 507 HOH HOH . T 5 HOH B 6 508 508 HOH HOH . T 5 HOH B 7 509 509 HOH HOH . T 5 HOH B 8 510 510 HOH HOH . T 5 HOH B 9 511 511 HOH HOH . T 5 HOH B 10 512 512 HOH HOH . T 5 HOH B 11 513 513 HOH HOH . T 5 HOH B 12 514 514 HOH HOH . T 5 HOH B 13 515 515 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 4 41.094 2.539 16.534 1 87.8 ? C1 NAG 701 A 1 HETATM 2 C C2 NAG . . . K 4 40.583 1.182 16.99 1 88.16 ? C2 NAG 701 A 1 HETATM 3 C C3 NAG . . . K 4 41.674 0.588 17.876 1 88.19 ? C3 NAG 701 A 1 HETATM 4 C C4 NAG . . . K 4 43.045 0.644 17.192 1 87.67 ? C4 NAG 701 A 1 HETATM 5 C C5 NAG . . . K 4 43.286 1.923 16.371 1 87.55 ? C5 NAG 701 A 1 HETATM 6 C C6 NAG . . . K 4 44.422 1.73 15.383 1 88.34 ? C6 NAG 701 A 1 HETATM 7 C C7 NAG . . . K 4 38.107 1.001 17.03 1 88.52 ? C7 NAG 701 A 1 HETATM 8 C C8 NAG . . . K 4 37.042 2.068 17.057 1 87.98 ? C8 NAG 701 A 1 HETATM 9 N N2 NAG . . . K 4 39.277 1.297 17.632 1 88.51 ? N2 NAG 701 A 1 HETATM 10 O O3 NAG . . . K 4 41.389 -0.764 18.17 1 89.27 ? O3 NAG 701 A 1 HETATM 11 O O4 NAG . . . K 4 44.058 0.454 18.168 1 87.2 ? O4 NAG 701 A 1 HETATM 12 O O5 NAG . . . K 4 42.145 2.268 15.63 1 87.06 ? O5 NAG 701 A 1 HETATM 13 O O6 NAG . . . K 4 45.557 1.236 16.129 1 90.48 ? O6 NAG 701 A 1 HETATM 14 O O7 NAG . . . K 4 37.861 -0.084 16.481 1 88.28 ? O7 NAG 701 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #