data_3KWJ # _model_server_result.job_id n4Q5ApoqQtHlaSJ1JMjkxw _model_server_result.datetime_utc '2024-12-18 01:45:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kwj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":796}' # _entry.id 3KWJ # _exptl.entry_id 3KWJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KWJ _cell.length_a 65.199 _cell.length_b 68.957 _cell.length_c 421.562 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KWJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 290 A CYS 328 1_555 A SG CYS 301 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 347 A CYS 385 1_555 A SG CYS 356 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 406 A CYS 444 1_555 A SG CYS 409 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf4 A SG CYS 416 A CYS 454 1_555 A SG CYS 434 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf5 A SG CYS 611 A CYS 649 1_555 A SG CYS 724 A CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 290 B CYS 328 1_555 B SG CYS 301 B CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf7 B SG CYS 347 B CYS 385 1_555 B SG CYS 356 B CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf8 B SG CYS 406 B CYS 444 1_555 B SG CYS 409 B CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf9 B SG CYS 416 B CYS 454 1_555 B SG CYS 434 B CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 B SG CYS 611 B CYS 649 1_555 B SG CYS 724 B CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 A ND2 ASN 47 A ASN 85 1_555 C C1 NAG . A NAG 794 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 B ND2 ASN 191 B ASN 229 1_555 G C1 NAG . B NAG 796 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 294 n n C1 O1 NAG sing 295 n n C1 O5 NAG sing 296 n n C1 H1 NAG sing 297 n n C2 C3 NAG sing 298 n n C2 N2 NAG sing 299 n n C2 H2 NAG sing 300 n n C3 C4 NAG sing 301 n n C3 O3 NAG sing 302 n n C3 H3 NAG sing 303 n n C4 C5 NAG sing 304 n n C4 O4 NAG sing 305 n n C4 H4 NAG sing 306 n n C5 C6 NAG sing 307 n n C5 O5 NAG sing 308 n n C5 H5 NAG sing 309 n n C6 O6 NAG sing 310 n n C6 H61 NAG sing 311 n n C6 H62 NAG sing 312 n n C7 C8 NAG sing 313 n n C7 N2 NAG sing 314 n n C7 O7 NAG doub 315 n n C8 H81 NAG sing 316 n n C8 H82 NAG sing 317 n n C8 H83 NAG sing 318 n n N2 HN2 NAG sing 319 n n O1 HO1 NAG sing 320 n n O3 HO3 NAG sing 321 n n O4 HO4 NAG sing 322 n n O6 HO6 NAG sing 323 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3KWJ _atom_sites.fract_transf_matrix[1][1] 0.015338 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014502 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 794 794 NAG NAG . D 2 NAG A 1 796 796 NAG NAG . E 3 23Q A 1 1 1 23Q LIG . F 2 NAG B 1 794 794 NAG NAG . G 2 NAG B 1 796 796 NAG NAG . H 3 23Q B 1 1 1 23Q LIG . I 4 HOH A 1 2 2 HOH HOH . I 4 HOH A 2 3 3 HOH HOH . I 4 HOH A 3 4 4 HOH HOH . I 4 HOH A 4 5 5 HOH HOH . I 4 HOH A 5 21 21 HOH HOH . I 4 HOH A 6 22 22 HOH HOH . I 4 HOH A 7 23 23 HOH HOH . I 4 HOH A 8 24 24 HOH HOH . I 4 HOH A 9 767 1 HOH HOH . J 4 HOH B 1 6 6 HOH HOH . J 4 HOH B 2 7 7 HOH HOH . J 4 HOH B 3 8 8 HOH HOH . J 4 HOH B 4 9 9 HOH HOH . J 4 HOH B 5 10 10 HOH HOH . J 4 HOH B 6 11 11 HOH HOH . J 4 HOH B 7 12 12 HOH HOH . J 4 HOH B 8 13 13 HOH HOH . J 4 HOH B 9 14 14 HOH HOH . J 4 HOH B 10 15 15 HOH HOH . J 4 HOH B 11 16 16 HOH HOH . J 4 HOH B 12 17 17 HOH HOH . J 4 HOH B 13 18 18 HOH HOH . J 4 HOH B 14 19 19 HOH HOH . J 4 HOH B 15 20 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 2 28.188 70.178 40.341 1 61.97 ? C1 NAG 796 A 1 HETATM 2 C C2 NAG . . . D 2 27.247 71.155 39.657 1 62.28 ? C2 NAG 796 A 1 HETATM 3 C C3 NAG . . . D 2 26.524 71.991 40.732 1 62.97 ? C3 NAG 796 A 1 HETATM 4 C C4 NAG . . . D 2 25.88 71.083 41.805 1 63.55 ? C4 NAG 796 A 1 HETATM 5 C C5 NAG . . . D 2 26.871 69.989 42.261 1 63.11 ? C5 NAG 796 A 1 HETATM 6 C C6 NAG . . . D 2 26.248 68.959 43.188 1 63.25 ? C6 NAG 796 A 1 HETATM 7 C C7 NAG . . . D 2 27.82 71.791 37.348 1 58.02 ? C7 NAG 796 A 1 HETATM 8 C C8 NAG . . . D 2 28.288 72.95 36.521 1 57.29 ? C8 NAG 796 A 1 HETATM 9 N N2 NAG . . . D 2 28.004 71.917 38.67 1 60 ? N2 NAG 796 A 1 HETATM 10 O O3 NAG . . . D 2 25.535 72.788 40.114 1 63.92 ? O3 NAG 796 A 1 HETATM 11 O O4 NAG . . . D 2 25.369 71.831 42.906 1 63.9 ? O4 NAG 796 A 1 HETATM 12 O O5 NAG . . . D 2 27.447 69.297 41.157 1 62.08 ? O5 NAG 796 A 1 HETATM 13 O O6 NAG . . . D 2 27.146 67.869 43.264 1 62.63 ? O6 NAG 796 A 1 HETATM 14 O O7 NAG . . . D 2 27.309 70.815 36.797 1 55.78 ? O7 NAG 796 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #