data_3KWR # _model_server_result.job_id QZKw9Zowo-BfD5bUkBCqyw _model_server_result.datetime_utc '2024-11-13 10:42:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kwr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":98}' # _entry.id 3KWR # _exptl.entry_id 3KWR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KWR _cell.length_a 104.869 _cell.length_b 104.869 _cell.length_c 35.979 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KWR _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 80 A THR 79 1_555 A N MSE 81 A MSE 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 A C MSE 81 A MSE 80 1_555 A N ALA 82 A ALA 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 B C THR 80 B THR 79 1_555 B N MSE 81 B MSE 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 B C MSE 81 B MSE 80 1_555 B N ALA 82 B ALA 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 3KWR _atom_sites.fract_transf_matrix[1][1] 0.009536 _atom_sites.fract_transf_matrix[1][2] 0.005505 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 97 1 SO4 SO4 . D 3 GOL A 1 98 2 GOL GOL . E 4 HOH A 1 99 99 HOH HOH . E 4 HOH A 2 100 5 HOH HOH . E 4 HOH A 3 101 6 HOH HOH . E 4 HOH A 4 102 7 HOH HOH . E 4 HOH A 5 103 9 HOH HOH . E 4 HOH A 6 104 104 HOH HOH . E 4 HOH A 7 105 105 HOH HOH . E 4 HOH A 8 106 10 HOH HOH . E 4 HOH A 9 107 11 HOH HOH . E 4 HOH A 10 108 12 HOH HOH . E 4 HOH A 11 109 13 HOH HOH . E 4 HOH A 12 110 15 HOH HOH . E 4 HOH A 13 111 111 HOH HOH . E 4 HOH A 14 112 112 HOH HOH . E 4 HOH A 15 113 113 HOH HOH . E 4 HOH A 16 114 114 HOH HOH . E 4 HOH A 17 115 115 HOH HOH . E 4 HOH A 18 116 116 HOH HOH . E 4 HOH A 19 117 117 HOH HOH . E 4 HOH A 20 118 118 HOH HOH . E 4 HOH A 21 119 17 HOH HOH . E 4 HOH A 22 120 120 HOH HOH . E 4 HOH A 23 121 18 HOH HOH . E 4 HOH A 24 122 20 HOH HOH . E 4 HOH A 25 123 123 HOH HOH . E 4 HOH A 26 124 124 HOH HOH . E 4 HOH A 27 125 125 HOH HOH . E 4 HOH A 28 126 22 HOH HOH . E 4 HOH A 29 127 127 HOH HOH . E 4 HOH A 30 128 23 HOH HOH . E 4 HOH A 31 129 129 HOH HOH . E 4 HOH A 32 130 130 HOH HOH . E 4 HOH A 33 131 24 HOH HOH . E 4 HOH A 34 132 25 HOH HOH . E 4 HOH A 35 133 26 HOH HOH . E 4 HOH A 36 134 27 HOH HOH . E 4 HOH A 37 135 29 HOH HOH . E 4 HOH A 38 136 31 HOH HOH . E 4 HOH A 39 137 137 HOH HOH . E 4 HOH A 40 138 36 HOH HOH . E 4 HOH A 41 139 38 HOH HOH . E 4 HOH A 42 140 39 HOH HOH . E 4 HOH A 43 141 141 HOH HOH . E 4 HOH A 44 142 40 HOH HOH . E 4 HOH A 45 143 143 HOH HOH . E 4 HOH A 46 144 144 HOH HOH . E 4 HOH A 47 145 145 HOH HOH . E 4 HOH A 48 146 146 HOH HOH . E 4 HOH A 49 147 41 HOH HOH . E 4 HOH A 50 148 50 HOH HOH . E 4 HOH A 51 149 51 HOH HOH . E 4 HOH A 52 150 54 HOH HOH . E 4 HOH A 53 151 55 HOH HOH . E 4 HOH A 54 152 152 HOH HOH . E 4 HOH A 55 153 153 HOH HOH . E 4 HOH A 56 154 154 HOH HOH . E 4 HOH A 57 155 57 HOH HOH . E 4 HOH A 58 156 58 HOH HOH . E 4 HOH A 59 157 157 HOH HOH . E 4 HOH A 60 158 61 HOH HOH . E 4 HOH A 61 159 159 HOH HOH . E 4 HOH A 62 160 160 HOH HOH . E 4 HOH A 63 161 161 HOH HOH . E 4 HOH A 64 162 62 HOH HOH . E 4 HOH A 65 163 65 HOH HOH . E 4 HOH A 66 164 66 HOH HOH . E 4 HOH A 67 165 165 HOH HOH . E 4 HOH A 68 166 69 HOH HOH . E 4 HOH A 69 167 167 HOH HOH . E 4 HOH A 70 168 168 HOH HOH . E 4 HOH A 71 169 169 HOH HOH . E 4 HOH A 72 170 170 HOH HOH . E 4 HOH A 73 171 171 HOH HOH . E 4 HOH A 74 172 71 HOH HOH . E 4 HOH A 75 173 173 HOH HOH . E 4 HOH A 76 174 73 HOH HOH . E 4 HOH A 77 175 74 HOH HOH . E 4 HOH A 78 176 176 HOH HOH . E 4 HOH A 79 177 177 HOH HOH . E 4 HOH A 80 178 76 HOH HOH . E 4 HOH A 81 179 78 HOH HOH . E 4 HOH A 82 180 180 HOH HOH . E 4 HOH A 83 181 181 HOH HOH . E 4 HOH A 84 182 182 HOH HOH . E 4 HOH A 85 183 183 HOH HOH . E 4 HOH A 86 184 184 HOH HOH . E 4 HOH A 87 185 81 HOH HOH . E 4 HOH A 88 186 82 HOH HOH . E 4 HOH A 89 187 84 HOH HOH . E 4 HOH A 90 188 188 HOH HOH . E 4 HOH A 91 189 87 HOH HOH . E 4 HOH A 92 190 88 HOH HOH . E 4 HOH A 93 191 191 HOH HOH . E 4 HOH A 94 192 192 HOH HOH . E 4 HOH A 95 193 89 HOH HOH . E 4 HOH A 96 194 194 HOH HOH . E 4 HOH A 97 195 90 HOH HOH . E 4 HOH A 98 196 196 HOH HOH . E 4 HOH A 99 197 197 HOH HOH . E 4 HOH A 100 198 91 HOH HOH . E 4 HOH A 101 199 199 HOH HOH . E 4 HOH A 102 200 200 HOH HOH . E 4 HOH A 103 201 201 HOH HOH . E 4 HOH A 104 202 92 HOH HOH . E 4 HOH A 105 203 97 HOH HOH . E 4 HOH A 106 204 204 HOH HOH . E 4 HOH A 107 205 205 HOH HOH . E 4 HOH A 108 206 98 HOH HOH . E 4 HOH A 109 207 207 HOH HOH . E 4 HOH A 110 208 208 HOH HOH . E 4 HOH A 111 209 209 HOH HOH . E 4 HOH A 112 210 210 HOH HOH . E 4 HOH A 113 211 179 HOH HOH . E 4 HOH A 114 213 213 HOH HOH . E 4 HOH A 115 214 214 HOH HOH . E 4 HOH A 116 217 217 HOH HOH . E 4 HOH A 117 218 218 HOH HOH . E 4 HOH A 118 220 220 HOH HOH . F 4 HOH B 1 97 3 HOH HOH . F 4 HOH B 2 98 4 HOH HOH . F 4 HOH B 3 99 8 HOH HOH . F 4 HOH B 4 100 100 HOH HOH . F 4 HOH B 5 101 101 HOH HOH . F 4 HOH B 6 102 102 HOH HOH . F 4 HOH B 7 103 103 HOH HOH . F 4 HOH B 8 104 14 HOH HOH . F 4 HOH B 9 105 16 HOH HOH . F 4 HOH B 10 106 106 HOH HOH . F 4 HOH B 11 107 107 HOH HOH . F 4 HOH B 12 108 108 HOH HOH . F 4 HOH B 13 109 109 HOH HOH . F 4 HOH B 14 110 110 HOH HOH . F 4 HOH B 15 111 19 HOH HOH . F 4 HOH B 16 112 21 HOH HOH . F 4 HOH B 17 113 28 HOH HOH . F 4 HOH B 18 114 30 HOH HOH . F 4 HOH B 19 115 32 HOH HOH . F 4 HOH B 20 116 33 HOH HOH . F 4 HOH B 21 117 34 HOH HOH . F 4 HOH B 22 118 35 HOH HOH . F 4 HOH B 23 119 119 HOH HOH . F 4 HOH B 24 120 37 HOH HOH . F 4 HOH B 25 121 121 HOH HOH . F 4 HOH B 26 122 122 HOH HOH . F 4 HOH B 27 123 42 HOH HOH . F 4 HOH B 28 124 43 HOH HOH . F 4 HOH B 29 125 44 HOH HOH . F 4 HOH B 30 126 126 HOH HOH . F 4 HOH B 31 127 45 HOH HOH . F 4 HOH B 32 128 128 HOH HOH . F 4 HOH B 33 129 46 HOH HOH . F 4 HOH B 34 130 47 HOH HOH . F 4 HOH B 35 131 131 HOH HOH . F 4 HOH B 36 132 132 HOH HOH . F 4 HOH B 37 133 133 HOH HOH . F 4 HOH B 38 134 134 HOH HOH . F 4 HOH B 39 135 135 HOH HOH . F 4 HOH B 40 136 136 HOH HOH . F 4 HOH B 41 137 48 HOH HOH . F 4 HOH B 42 138 138 HOH HOH . F 4 HOH B 43 139 139 HOH HOH . F 4 HOH B 44 140 140 HOH HOH . F 4 HOH B 45 141 49 HOH HOH . F 4 HOH B 46 142 142 HOH HOH . F 4 HOH B 47 143 52 HOH HOH . F 4 HOH B 48 144 53 HOH HOH . F 4 HOH B 49 145 56 HOH HOH . F 4 HOH B 50 146 59 HOH HOH . F 4 HOH B 51 147 147 HOH HOH . F 4 HOH B 52 148 148 HOH HOH . F 4 HOH B 53 149 149 HOH HOH . F 4 HOH B 54 150 150 HOH HOH . F 4 HOH B 55 151 151 HOH HOH . F 4 HOH B 56 152 60 HOH HOH . F 4 HOH B 57 153 63 HOH HOH . F 4 HOH B 58 154 64 HOH HOH . F 4 HOH B 59 155 155 HOH HOH . F 4 HOH B 60 156 156 HOH HOH . F 4 HOH B 61 157 67 HOH HOH . F 4 HOH B 62 158 158 HOH HOH . F 4 HOH B 63 159 68 HOH HOH . F 4 HOH B 64 160 70 HOH HOH . F 4 HOH B 65 161 72 HOH HOH . F 4 HOH B 66 162 162 HOH HOH . F 4 HOH B 67 163 163 HOH HOH . F 4 HOH B 68 164 164 HOH HOH . F 4 HOH B 69 165 75 HOH HOH . F 4 HOH B 70 166 166 HOH HOH . F 4 HOH B 71 167 77 HOH HOH . F 4 HOH B 72 168 79 HOH HOH . F 4 HOH B 73 169 80 HOH HOH . F 4 HOH B 74 170 83 HOH HOH . F 4 HOH B 75 171 85 HOH HOH . F 4 HOH B 76 172 172 HOH HOH . F 4 HOH B 77 173 86 HOH HOH . F 4 HOH B 78 174 174 HOH HOH . F 4 HOH B 79 175 175 HOH HOH . F 4 HOH B 80 176 93 HOH HOH . F 4 HOH B 81 177 94 HOH HOH . F 4 HOH B 82 178 178 HOH HOH . F 4 HOH B 83 180 95 HOH HOH . F 4 HOH B 84 181 96 HOH HOH . F 4 HOH B 85 185 185 HOH HOH . F 4 HOH B 86 186 186 HOH HOH . F 4 HOH B 87 187 187 HOH HOH . F 4 HOH B 88 189 189 HOH HOH . F 4 HOH B 89 190 190 HOH HOH . F 4 HOH B 90 193 193 HOH HOH . F 4 HOH B 91 195 195 HOH HOH . F 4 HOH B 92 198 198 HOH HOH . F 4 HOH B 93 202 202 HOH HOH . F 4 HOH B 94 203 203 HOH HOH . F 4 HOH B 95 206 206 HOH HOH . F 4 HOH B 96 211 211 HOH HOH . F 4 HOH B 97 212 212 HOH HOH . F 4 HOH B 98 215 215 HOH HOH . F 4 HOH B 99 216 216 HOH HOH . F 4 HOH B 100 219 219 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . A . D 3 75.375 5.118 11.044 0.5 26.01 ? C1 GOL 98 A 1 HETATM 2 C C1 GOL . B . D 3 75.007 5.651 10.953 0.5 21.72 ? C1 GOL 98 A 1 HETATM 3 O O1 GOL . A . D 3 75.454 5.963 9.897 0.5 26.22 ? O1 GOL 98 A 1 HETATM 4 O O1 GOL . B . D 3 76.264 5.08 11.141 0.5 13.37 ? O1 GOL 98 A 1 HETATM 5 C C2 GOL . A . D 3 73.947 4.599 11.216 0.5 26.87 ? C2 GOL 98 A 1 HETATM 6 C C2 GOL . B . D 3 74.08 5.073 11.983 0.5 24.83 ? C2 GOL 98 A 1 HETATM 7 O O2 GOL . A . D 3 73.848 3.227 10.93 0.5 26.68 ? O2 GOL 98 A 1 HETATM 8 O O2 GOL . B . D 3 73.263 4.141 11.298 0.5 25.65 ? O2 GOL 98 A 1 HETATM 9 C C3 GOL . A . D 3 73.419 4.889 12.627 0.5 27.54 ? C3 GOL 98 A 1 HETATM 10 C C3 GOL . B . D 3 73.366 6.268 12.624 0.5 26.95 ? C3 GOL 98 A 1 HETATM 11 O O3 GOL . A . D 3 72.083 5.338 12.541 0.5 28.59 ? O3 GOL 98 A 1 HETATM 12 O O3 GOL . B . D 3 71.995 6.313 12.297 0.5 25.73 ? O3 GOL 98 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #