data_3KWZ # _model_server_result.job_id '_d-0Dw1chTe3HnLdJrVnYQ' _model_server_result.datetime_utc '2025-01-18 06:58:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kwz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":222}' # _entry.id 3KWZ # _exptl.entry_id 3KWZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 374.403 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(3-piperidin-1-ylpropyl)-6-[3-(trifluoromethyl)phenyl]pyrimidine-2-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KWZ _cell.length_a 55.814 _cell.length_b 55.814 _cell.length_c 129.115 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KWZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 155 A CYS 155 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? covale ? covale1 A SG CYS 25 A CYS 25 1_555 H C26 KWZ . A KWZ 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 ? # _chem_comp.formula 'C20 H21 F3 N4' _chem_comp.formula_weight 374.403 _chem_comp.id KWZ _chem_comp.mon_nstd_flag . _chem_comp.name 4-(3-piperidin-1-ylpropyl)-6-[3-(trifluoromethyl)phenyl]pyrimidine-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 KWZ doub 173 n y N1 C6 KWZ sing 174 n y C2 C3 KWZ sing 175 n y C2 C7 KWZ sing 176 n y C3 C4 KWZ doub 177 n y C4 N5 KWZ sing 178 n y C4 C8 KWZ sing 179 n n N5 C6 KWZ doub 180 n y C6 C26 KWZ sing 181 n n C7 C12 KWZ doub 182 n y C7 C16 KWZ sing 183 n y C8 C9 KWZ sing 184 n n C9 C10 KWZ sing 185 n n C10 N11 KWZ sing 186 n n N11 C21 KWZ sing 187 n n N11 C25 KWZ sing 188 n n C12 C13 KWZ sing 189 n y C13 C14 KWZ doub 190 n y C13 C17 KWZ sing 191 n n C14 C15 KWZ sing 192 n y C15 C16 KWZ doub 193 n y C17 F18 KWZ sing 194 n n C17 F19 KWZ sing 195 n n C17 F20 KWZ sing 196 n n C21 C22 KWZ sing 197 n n C22 C23 KWZ sing 198 n n C23 C24 KWZ sing 199 n n C24 C25 KWZ sing 200 n n C26 N27 KWZ trip 201 n n C3 H3 KWZ sing 202 n n C8 H8 KWZ sing 203 n n C8 H8A KWZ sing 204 n n C9 H9 KWZ sing 205 n n C9 H9A KWZ sing 206 n n C10 H10 KWZ sing 207 n n C10 H10A KWZ sing 208 n n C12 H12 KWZ sing 209 n n C14 H14 KWZ sing 210 n n C15 H15 KWZ sing 211 n n C16 H16 KWZ sing 212 n n C21 H21 KWZ sing 213 n n C21 H21A KWZ sing 214 n n C22 H22 KWZ sing 215 n n C22 H22A KWZ sing 216 n n C23 H23 KWZ sing 217 n n C23 H23A KWZ sing 218 n n C24 H24 KWZ sing 219 n n C24 H24A KWZ sing 220 n n C25 H25 KWZ sing 221 n n C25 H25A KWZ sing 222 n n # _atom_sites.entry_id 3KWZ _atom_sites.fract_transf_matrix[1][1] 0.017917 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017917 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007745 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 216 1 SO4 SO4 . C 2 SO4 A 1 217 2 SO4 SO4 . D 2 SO4 A 1 218 3 SO4 SO4 . E 2 SO4 A 1 219 4 SO4 SO4 . F 2 SO4 A 1 220 5 SO4 SO4 . G 2 SO4 A 1 221 6 SO4 SO4 . H 3 KWZ A 1 222 1 KWZ 244 . I 4 HOH A 1 223 1 HOH HOH . I 4 HOH A 2 224 2 HOH HOH . I 4 HOH A 3 225 3 HOH HOH . I 4 HOH A 4 226 4 HOH HOH . I 4 HOH A 5 227 5 HOH HOH . I 4 HOH A 6 228 6 HOH HOH . I 4 HOH A 7 229 7 HOH HOH . I 4 HOH A 8 230 8 HOH HOH . I 4 HOH A 9 231 9 HOH HOH . I 4 HOH A 10 232 10 HOH HOH . I 4 HOH A 11 233 11 HOH HOH . I 4 HOH A 12 234 12 HOH HOH . I 4 HOH A 13 235 13 HOH HOH . I 4 HOH A 14 236 14 HOH HOH . I 4 HOH A 15 237 15 HOH HOH . I 4 HOH A 16 238 16 HOH HOH . I 4 HOH A 17 239 17 HOH HOH . I 4 HOH A 18 240 18 HOH HOH . I 4 HOH A 19 241 19 HOH HOH . I 4 HOH A 20 242 20 HOH HOH . I 4 HOH A 21 243 21 HOH HOH . I 4 HOH A 22 244 22 HOH HOH . I 4 HOH A 23 245 23 HOH HOH . I 4 HOH A 24 246 24 HOH HOH . I 4 HOH A 25 247 25 HOH HOH . I 4 HOH A 26 248 26 HOH HOH . I 4 HOH A 27 249 27 HOH HOH . I 4 HOH A 28 250 28 HOH HOH . I 4 HOH A 29 251 29 HOH HOH . I 4 HOH A 30 252 30 HOH HOH . I 4 HOH A 31 253 31 HOH HOH . I 4 HOH A 32 254 32 HOH HOH . I 4 HOH A 33 255 33 HOH HOH . I 4 HOH A 34 256 34 HOH HOH . I 4 HOH A 35 257 35 HOH HOH . I 4 HOH A 36 258 36 HOH HOH . I 4 HOH A 37 259 37 HOH HOH . I 4 HOH A 38 260 38 HOH HOH . I 4 HOH A 39 261 39 HOH HOH . I 4 HOH A 40 262 40 HOH HOH . I 4 HOH A 41 263 41 HOH HOH . I 4 HOH A 42 264 42 HOH HOH . I 4 HOH A 43 265 43 HOH HOH . I 4 HOH A 44 266 44 HOH HOH . I 4 HOH A 45 267 45 HOH HOH . I 4 HOH A 46 268 46 HOH HOH . I 4 HOH A 47 269 47 HOH HOH . I 4 HOH A 48 270 48 HOH HOH . I 4 HOH A 49 271 49 HOH HOH . I 4 HOH A 50 272 50 HOH HOH . I 4 HOH A 51 273 51 HOH HOH . I 4 HOH A 52 274 52 HOH HOH . I 4 HOH A 53 275 53 HOH HOH . I 4 HOH A 54 276 54 HOH HOH . I 4 HOH A 55 277 55 HOH HOH . I 4 HOH A 56 278 56 HOH HOH . I 4 HOH A 57 279 58 HOH HOH . I 4 HOH A 58 280 59 HOH HOH . I 4 HOH A 59 281 60 HOH HOH . I 4 HOH A 60 282 61 HOH HOH . I 4 HOH A 61 283 62 HOH HOH . I 4 HOH A 62 284 63 HOH HOH . I 4 HOH A 63 285 64 HOH HOH . I 4 HOH A 64 286 65 HOH HOH . I 4 HOH A 65 287 66 HOH HOH . I 4 HOH A 66 288 67 HOH HOH . I 4 HOH A 67 289 68 HOH HOH . I 4 HOH A 68 290 69 HOH HOH . I 4 HOH A 69 291 70 HOH HOH . I 4 HOH A 70 292 71 HOH HOH . I 4 HOH A 71 293 72 HOH HOH . I 4 HOH A 72 294 73 HOH HOH . I 4 HOH A 73 295 74 HOH HOH . I 4 HOH A 74 296 75 HOH HOH . I 4 HOH A 75 297 76 HOH HOH . I 4 HOH A 76 298 77 HOH HOH . I 4 HOH A 77 299 78 HOH HOH . I 4 HOH A 78 300 79 HOH HOH . I 4 HOH A 79 301 80 HOH HOH . I 4 HOH A 80 302 81 HOH HOH . I 4 HOH A 81 303 82 HOH HOH . I 4 HOH A 82 304 83 HOH HOH . I 4 HOH A 83 305 84 HOH HOH . I 4 HOH A 84 306 85 HOH HOH . I 4 HOH A 85 307 86 HOH HOH . I 4 HOH A 86 308 87 HOH HOH . I 4 HOH A 87 309 88 HOH HOH . I 4 HOH A 88 310 89 HOH HOH . I 4 HOH A 89 311 90 HOH HOH . I 4 HOH A 90 312 91 HOH HOH . I 4 HOH A 91 313 92 HOH HOH . I 4 HOH A 92 314 93 HOH HOH . I 4 HOH A 93 315 94 HOH HOH . I 4 HOH A 94 316 96 HOH HOH . I 4 HOH A 95 317 97 HOH HOH . I 4 HOH A 96 318 98 HOH HOH . I 4 HOH A 97 319 99 HOH HOH . I 4 HOH A 98 320 100 HOH HOH . I 4 HOH A 99 321 101 HOH HOH . I 4 HOH A 100 322 102 HOH HOH . I 4 HOH A 101 323 103 HOH HOH . I 4 HOH A 102 324 104 HOH HOH . I 4 HOH A 103 325 105 HOH HOH . I 4 HOH A 104 326 106 HOH HOH . I 4 HOH A 105 327 107 HOH HOH . I 4 HOH A 106 328 108 HOH HOH . I 4 HOH A 107 329 109 HOH HOH . I 4 HOH A 108 330 110 HOH HOH . I 4 HOH A 109 331 111 HOH HOH . I 4 HOH A 110 332 113 HOH HOH . I 4 HOH A 111 333 114 HOH HOH . I 4 HOH A 112 334 115 HOH HOH . I 4 HOH A 113 335 116 HOH HOH . I 4 HOH A 114 336 117 HOH HOH . I 4 HOH A 115 337 118 HOH HOH . I 4 HOH A 116 338 119 HOH HOH . I 4 HOH A 117 339 120 HOH HOH . I 4 HOH A 118 340 121 HOH HOH . I 4 HOH A 119 341 122 HOH HOH . I 4 HOH A 120 342 125 HOH HOH . I 4 HOH A 121 343 126 HOH HOH . I 4 HOH A 122 344 127 HOH HOH . I 4 HOH A 123 345 128 HOH HOH . I 4 HOH A 124 346 129 HOH HOH . I 4 HOH A 125 347 130 HOH HOH . I 4 HOH A 126 348 131 HOH HOH . I 4 HOH A 127 349 132 HOH HOH . I 4 HOH A 128 350 133 HOH HOH . I 4 HOH A 129 351 134 HOH HOH . I 4 HOH A 130 352 135 HOH HOH . I 4 HOH A 131 353 136 HOH HOH . I 4 HOH A 132 354 137 HOH HOH . I 4 HOH A 133 355 138 HOH HOH . I 4 HOH A 134 356 139 HOH HOH . I 4 HOH A 135 357 140 HOH HOH . I 4 HOH A 136 358 141 HOH HOH . I 4 HOH A 137 359 142 HOH HOH . I 4 HOH A 138 360 143 HOH HOH . I 4 HOH A 139 361 144 HOH HOH . I 4 HOH A 140 362 146 HOH HOH . I 4 HOH A 141 363 149 HOH HOH . I 4 HOH A 142 364 150 HOH HOH . I 4 HOH A 143 365 151 HOH HOH . I 4 HOH A 144 366 152 HOH HOH . I 4 HOH A 145 367 153 HOH HOH . I 4 HOH A 146 368 154 HOH HOH . I 4 HOH A 147 369 155 HOH HOH . I 4 HOH A 148 370 156 HOH HOH . I 4 HOH A 149 371 157 HOH HOH . I 4 HOH A 150 372 158 HOH HOH . I 4 HOH A 151 373 159 HOH HOH . I 4 HOH A 152 374 160 HOH HOH . I 4 HOH A 153 375 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 KWZ . . . H 3 11.805 -17.31 4.194 1 25.99 ? N1 KWZ 222 A 1 HETATM 2 C C2 KWZ . . . H 3 13.092 -17.052 3.976 1 28.54 ? C2 KWZ 222 A 1 HETATM 3 C C3 KWZ . . . H 3 13.421 -16.253 2.86 1 27.61 ? C3 KWZ 222 A 1 HETATM 4 C C4 KWZ . . . H 3 12.42 -15.68 2.074 1 27.17 ? C4 KWZ 222 A 1 HETATM 5 N N5 KWZ . . . H 3 11.146 -15.949 2.369 1 28.21 ? N5 KWZ 222 A 1 HETATM 6 C C6 KWZ . . . H 3 10.863 -16.776 3.391 1 27.25 ? C6 KWZ 222 A 1 HETATM 7 C C7 KWZ . . . H 3 14.086 -17.727 4.884 1 28.59 ? C7 KWZ 222 A 1 HETATM 8 C C8 KWZ . . . H 3 12.738 -14.806 0.885 1 27.79 ? C8 KWZ 222 A 1 HETATM 9 C C9 KWZ . . . H 3 12.065 -15.311 -0.38 1 27.55 ? C9 KWZ 222 A 1 HETATM 10 C C10 KWZ . . . H 3 12.555 -16.722 -0.741 1 30.06 ? C10 KWZ 222 A 1 HETATM 11 N N11 KWZ . . . H 3 12.208 -17.278 -2.087 1 32.48 ? N11 KWZ 222 A 1 HETATM 12 C C12 KWZ . . . H 3 13.609 -18.379 6.029 1 29.6 ? C12 KWZ 222 A 1 HETATM 13 C C13 KWZ . . . H 3 14.451 -19.068 6.898 1 29.86 ? C13 KWZ 222 A 1 HETATM 14 C C14 KWZ . . . H 3 15.816 -19.112 6.608 1 28.57 ? C14 KWZ 222 A 1 HETATM 15 C C15 KWZ . . . H 3 16.292 -18.469 5.469 1 29.8 ? C15 KWZ 222 A 1 HETATM 16 C C16 KWZ . . . H 3 15.448 -17.776 4.604 1 29.32 ? C16 KWZ 222 A 1 HETATM 17 C C17 KWZ . . . H 3 13.91 -19.747 8.123 1 30.63 ? C17 KWZ 222 A 1 HETATM 18 F F18 KWZ . . . H 3 12.928 -20.59 7.827 1 33.35 ? F18 KWZ 222 A 1 HETATM 19 F F19 KWZ . . . H 3 14.889 -20.428 8.638 1 32.99 ? F19 KWZ 222 A 1 HETATM 20 F F20 KWZ . . . H 3 13.504 -18.929 9.083 1 34.65 ? F20 KWZ 222 A 1 HETATM 21 C C21 KWZ . . . H 3 11.078 -16.591 -2.767 1 31.3 ? C21 KWZ 222 A 1 HETATM 22 C C22 KWZ . . . H 3 10.401 -17.3 -3.954 1 31.7 ? C22 KWZ 222 A 1 HETATM 23 C C23 KWZ . . . H 3 10.783 -18.76 -4.189 1 32.21 ? C23 KWZ 222 A 1 HETATM 24 C C24 KWZ . . . H 3 11.859 -19.394 -3.297 1 32.51 ? C24 KWZ 222 A 1 HETATM 25 C C25 KWZ . . . H 3 12.081 -18.733 -1.951 1 32.7 ? C25 KWZ 222 A 1 HETATM 26 C C26 KWZ . . . H 3 9.437 -17.01 3.653 1 28.45 ? C26 KWZ 222 A 1 HETATM 27 N N27 KWZ . . . H 3 8.63 -16.366 2.927 1 26.52 ? N27 KWZ 222 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #