data_3KXD
#
_model_server_result.job_id            oiOewNCiiar62JjLuTDFqg 
_model_server_result.datetime_utc      '2024-10-18 16:21:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kxd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    3KXD 
#
_exptl.entry_id    3KXD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.1 
_cell.angle_gamma         90 
_cell.entry_id            3KXD 
_cell.length_a            58.022 
_cell.length_b            38.293 
_cell.length_c            96.634 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KXD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLU 29 A GLU 144 1_555 D CD CD . A CD 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc2 A NE2 HIS 46 A HIS 161 1_555 D CD CD . A CD 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? 
metalc ? metalc3 A OD2 ASP 69 A ASP 184 1_555 C CD CD . A CD 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
metalc ? metalc4 A OD1 ASP 69 A ASP 184 1_555 C CD CD . A CD 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? 
metalc ? metalc5 A OE1 GLU 211 A GLU 326 1_555 E CD CD . A CD 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
metalc ? metalc6 B OE2 GLU 95 B GLU 210 1_555 F CD CD . B CD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3KXD 
_atom_sites.fract_transf_matrix[1][1]    0.017235 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001538 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026114 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010389 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CD A 1 602 602 CD CD . 
D 2 CD A 1 603 603 CD CD . 
E 2 CD A 1 604 604 CD CD . 
F 2 CD B 1 601 601 CD CD . 
G 3 HOH A 1 1 1 HOH HOH . 
G 3 HOH A 2 3 3 HOH HOH . 
G 3 HOH A 3 4 4 HOH HOH . 
G 3 HOH A 4 6 6 HOH HOH . 
G 3 HOH A 5 7 7 HOH HOH . 
G 3 HOH A 6 10 10 HOH HOH . 
G 3 HOH A 7 11 11 HOH HOH . 
G 3 HOH A 8 12 12 HOH HOH . 
G 3 HOH A 9 13 13 HOH HOH . 
G 3 HOH A 10 14 14 HOH HOH . 
G 3 HOH A 11 15 15 HOH HOH . 
G 3 HOH A 12 16 16 HOH HOH . 
G 3 HOH A 13 17 17 HOH HOH . 
G 3 HOH A 14 19 19 HOH HOH . 
G 3 HOH A 15 23 23 HOH HOH . 
G 3 HOH A 16 25 25 HOH HOH . 
G 3 HOH A 17 26 26 HOH HOH . 
G 3 HOH A 18 28 28 HOH HOH . 
G 3 HOH A 19 30 30 HOH HOH . 
G 3 HOH A 20 31 31 HOH HOH . 
G 3 HOH A 21 33 33 HOH HOH . 
G 3 HOH A 22 34 34 HOH HOH . 
G 3 HOH A 23 37 37 HOH HOH . 
G 3 HOH A 24 38 38 HOH HOH . 
G 3 HOH A 25 39 39 HOH HOH . 
G 3 HOH A 26 42 42 HOH HOH . 
G 3 HOH A 27 43 43 HOH HOH . 
G 3 HOH A 28 44 44 HOH HOH . 
G 3 HOH A 29 45 45 HOH HOH . 
G 3 HOH A 30 46 46 HOH HOH . 
G 3 HOH A 31 48 48 HOH HOH . 
G 3 HOH A 32 49 49 HOH HOH . 
G 3 HOH A 33 53 53 HOH HOH . 
G 3 HOH A 34 54 54 HOH HOH . 
G 3 HOH A 35 55 55 HOH HOH . 
G 3 HOH A 36 57 57 HOH HOH . 
G 3 HOH A 37 58 58 HOH HOH . 
G 3 HOH A 38 59 59 HOH HOH . 
G 3 HOH A 39 60 60 HOH HOH . 
G 3 HOH A 40 61 61 HOH HOH . 
G 3 HOH A 41 66 66 HOH HOH . 
G 3 HOH A 42 67 67 HOH HOH . 
G 3 HOH A 43 69 69 HOH HOH . 
G 3 HOH A 44 70 70 HOH HOH . 
G 3 HOH A 45 71 71 HOH HOH . 
G 3 HOH A 46 73 73 HOH HOH . 
G 3 HOH A 47 74 74 HOH HOH . 
G 3 HOH A 48 75 75 HOH HOH . 
G 3 HOH A 49 77 77 HOH HOH . 
G 3 HOH A 50 78 78 HOH HOH . 
G 3 HOH A 51 79 79 HOH HOH . 
G 3 HOH A 52 81 81 HOH HOH . 
G 3 HOH A 53 83 83 HOH HOH . 
G 3 HOH A 54 86 86 HOH HOH . 
G 3 HOH A 55 88 88 HOH HOH . 
G 3 HOH A 56 91 91 HOH HOH . 
G 3 HOH A 57 93 93 HOH HOH . 
G 3 HOH A 58 94 94 HOH HOH . 
G 3 HOH A 59 95 95 HOH HOH . 
G 3 HOH A 60 99 99 HOH HOH . 
G 3 HOH A 61 100 100 HOH HOH . 
G 3 HOH A 62 101 101 HOH HOH . 
G 3 HOH A 63 103 103 HOH HOH . 
G 3 HOH A 64 104 104 HOH HOH . 
G 3 HOH A 65 340 119 HOH HOH . 
G 3 HOH A 66 341 120 HOH HOH . 
G 3 HOH A 67 342 123 HOH HOH . 
H 3 HOH B 1 2 2 HOH HOH . 
H 3 HOH B 2 5 5 HOH HOH . 
H 3 HOH B 3 8 8 HOH HOH . 
H 3 HOH B 4 9 9 HOH HOH . 
H 3 HOH B 5 18 18 HOH HOH . 
H 3 HOH B 6 20 20 HOH HOH . 
H 3 HOH B 7 21 21 HOH HOH . 
H 3 HOH B 8 22 22 HOH HOH . 
H 3 HOH B 9 24 24 HOH HOH . 
H 3 HOH B 10 27 27 HOH HOH . 
H 3 HOH B 11 29 29 HOH HOH . 
H 3 HOH B 12 32 32 HOH HOH . 
H 3 HOH B 13 35 35 HOH HOH . 
H 3 HOH B 14 36 36 HOH HOH . 
H 3 HOH B 15 40 40 HOH HOH . 
H 3 HOH B 16 41 41 HOH HOH . 
H 3 HOH B 17 47 47 HOH HOH . 
H 3 HOH B 18 50 50 HOH HOH . 
H 3 HOH B 19 51 51 HOH HOH . 
H 3 HOH B 20 62 62 HOH HOH . 
H 3 HOH B 21 63 63 HOH HOH . 
H 3 HOH B 22 64 64 HOH HOH . 
H 3 HOH B 23 65 65 HOH HOH . 
H 3 HOH B 24 68 68 HOH HOH . 
H 3 HOH B 25 72 72 HOH HOH . 
H 3 HOH B 26 76 76 HOH HOH . 
H 3 HOH B 27 80 80 HOH HOH . 
H 3 HOH B 28 82 82 HOH HOH . 
H 3 HOH B 29 85 85 HOH HOH . 
H 3 HOH B 30 87 87 HOH HOH . 
H 3 HOH B 31 92 92 HOH HOH . 
H 3 HOH B 32 105 105 HOH HOH . 
H 3 HOH B 33 106 106 HOH HOH . 
H 3 HOH B 34 109 109 HOH HOH . 
H 3 HOH B 35 110 110 HOH HOH . 
H 3 HOH B 36 111 111 HOH HOH . 
H 3 HOH B 37 112 112 HOH HOH . 
H 3 HOH B 38 113 113 HOH HOH . 
H 3 HOH B 39 114 114 HOH HOH . 
H 3 HOH B 40 115 115 HOH HOH . 
H 3 HOH B 41 340 116 HOH HOH . 
H 3 HOH B 42 341 117 HOH HOH . 
H 3 HOH B 43 342 118 HOH HOH . 
H 3 HOH B 44 343 121 HOH HOH . 
H 3 HOH B 45 344 122 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               14.773 
_atom_site.Cartn_y               10.138 
_atom_site.Cartn_z               -3.866 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        128.35 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           603 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#