data_3KXF
#
_model_server_result.job_id            sQ9jwX3k6kEqGBtJLee4rQ 
_model_server_result.datetime_utc      '2024-11-09 02:19:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kxf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":279}' 
#
_entry.id    3KXF 
#
_exptl.entry_id    3KXF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              126.904 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IODIDE ION' 
_entity.pdbx_number_of_molecules    24 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.19 
_cell.angle_gamma         90 
_cell.entry_id            3KXF 
_cell.length_a            78.69 
_cell.length_b            207.077 
_cell.length_c            123.512 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KXF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? pentameric 5 author_defined_assembly 1 
? pentameric 5 author_defined_assembly 2 
? pentameric 5 author_defined_assembly 3 
? pentameric 5 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,M,U,V,W,X,CA,DA,EA,SA,TA,UA,VA 1 1 
C,F,G,H,N,Y,Z,AA,BA,FA,GA,HA,WA,XA 2 1 
I,J,K,L,O,IA,JA,KA,LA,MA,YA,ZA,AB,BB 3 1 
P,Q,R,S,T,NA,OA,PA,QA,RA,CB,DB,EB,FB 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 U N N 
? 6 V N N 
? 6 W N N 
? 6 X N N 
? 6 Y N N 
? 6 Z N N 
? 6 AA N N 
? 6 BA N N 
? 6 CA N N 
? 6 DA N N 
? 6 EA N N 
? 6 FA N N 
? 6 GA N N 
? 6 HA N N 
? 6 IA N N 
? 6 JA N N 
? 6 KA N N 
? 6 LA N N 
? 6 MA N N 
? 6 NA N N 
? 6 OA N N 
? 6 PA N N 
? 6 QA N N 
? 6 RA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 C SG CYS 101 C CYS 101 1_555 C SG CYS 164 C CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf5 C SG CYS 203 C CYS 203 1_555 C SG CYS 259 C CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf6 D SG CYS 22 D CYS 22 1_555 D SG CYS 91 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 D SG CYS 137 D CYS 137 1_555 D SG CYS 187 D CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf8 D SG CYS 162 D CYS 162 1_555 E SG CYS 168 E CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf9 E SG CYS 21 E CYS 23 1_555 E SG CYS 89 E CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf10 E SG CYS 142 E CYS 144 1_555 E SG CYS 207 E CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf11 F SG CYS 25 F CYS 25 1_555 F SG CYS 80 F CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf12 G SG CYS 22 G CYS 22 1_555 G SG CYS 91 G CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf13 G SG CYS 137 G CYS 137 1_555 G SG CYS 187 G CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf14 G SG CYS 162 G CYS 162 1_555 H SG CYS 168 H CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf15 H SG CYS 21 H CYS 23 1_555 H SG CYS 89 H CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf16 H SG CYS 142 H CYS 144 1_555 H SG CYS 207 H CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf17 I SG CYS 101 K CYS 101 1_555 I SG CYS 164 K CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf18 I SG CYS 203 K CYS 203 1_555 I SG CYS 259 K CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf19 J SG CYS 25 L CYS 25 1_555 J SG CYS 80 L CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf20 K SG CYS 22 N CYS 22 1_555 K SG CYS 91 N CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf21 K SG CYS 137 N CYS 137 1_555 K SG CYS 187 N CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf22 K SG CYS 162 N CYS 162 1_555 L SG CYS 168 P CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf23 L SG CYS 21 P CYS 23 1_555 L SG CYS 89 P CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf24 L SG CYS 142 P CYS 144 1_555 L SG CYS 207 P CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf25 P SG CYS 101 I CYS 101 1_555 P SG CYS 164 I CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf26 P SG CYS 203 I CYS 203 1_555 P SG CYS 259 I CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf27 Q SG CYS 25 J CYS 25 1_555 Q SG CYS 80 J CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf28 R SG CYS 22 M CYS 22 1_555 R SG CYS 91 M CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf29 R SG CYS 137 M CYS 137 1_555 R SG CYS 187 M CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf30 R SG CYS 162 M CYS 162 1_555 S SG CYS 168 O CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf31 S SG CYS 21 O CYS 23 1_555 S SG CYS 89 O CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf32 S SG CYS 142 O CYS 144 1_555 S SG CYS 207 O CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
#
_chem_comp.formula           'I -1' 
_chem_comp.formula_weight    126.904 
_chem_comp.id                IOD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IODIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3KXF 
_atom_sites.fract_transf_matrix[1][1]    0.012708 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000042 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004829 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008096 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 6 IOD A 1 277 277 IOD IOD . 
V 6 IOD A 1 278 278 IOD IOD . 
W 6 IOD A 1 279 279 IOD IOD . 
X 6 IOD B 1 100 100 IOD IOD . 
Y 6 IOD C 1 277 277 IOD IOD . 
Z 6 IOD C 1 278 278 IOD IOD . 
AA 6 IOD C 1 279 279 IOD IOD . 
BA 6 IOD C 1 280 280 IOD IOD . 
CA 6 IOD D 1 205 205 IOD IOD . 
DA 6 IOD E 1 244 244 IOD IOD . 
EA 6 IOD E 1 245 245 IOD IOD . 
FA 6 IOD F 1 100 100 IOD IOD . 
GA 6 IOD G 1 205 205 IOD IOD . 
HA 6 IOD H 1 244 244 IOD IOD . 
IA 6 IOD K 1 277 277 IOD IOD . 
JA 6 IOD K 1 278 278 IOD IOD . 
KA 6 IOD K 1 279 279 IOD IOD . 
LA 6 IOD L 1 100 100 IOD IOD . 
MA 6 IOD P 1 1 1 IOD IOD . 
NA 6 IOD I 1 277 277 IOD IOD . 
OA 6 IOD I 1 278 278 IOD IOD . 
PA 6 IOD I 1 279 279 IOD IOD . 
QA 6 IOD I 1 280 280 IOD IOD . 
RA 6 IOD J 1 100 100 IOD IOD . 
SA 7 HOH A 1 280 280 HOH HOH . 
SA 7 HOH A 2 281 281 HOH HOH . 
TA 7 HOH B 1 101 101 HOH HOH . 
TA 7 HOH B 2 102 102 HOH HOH . 
UA 7 HOH D 1 206 206 HOH HOH . 
UA 7 HOH D 2 207 207 HOH HOH . 
UA 7 HOH D 3 208 208 HOH HOH . 
VA 7 HOH E 1 246 246 HOH HOH . 
VA 7 HOH E 2 247 247 HOH HOH . 
VA 7 HOH E 3 248 248 HOH HOH . 
WA 7 HOH G 1 206 206 HOH HOH . 
WA 7 HOH G 2 207 207 HOH HOH . 
WA 7 HOH G 3 208 208 HOH HOH . 
XA 7 HOH H 1 245 245 HOH HOH . 
XA 7 HOH H 2 246 246 HOH HOH . 
XA 7 HOH H 3 247 247 HOH HOH . 
XA 7 HOH H 4 248 248 HOH HOH . 
XA 7 HOH H 5 249 249 HOH HOH . 
XA 7 HOH H 6 250 250 HOH HOH . 
XA 7 HOH H 7 251 251 HOH HOH . 
YA 7 HOH K 1 280 280 HOH HOH . 
YA 7 HOH K 2 281 281 HOH HOH . 
YA 7 HOH K 3 282 282 HOH HOH . 
ZA 7 HOH L 1 101 101 HOH HOH . 
AB 7 HOH N 1 205 205 HOH HOH . 
AB 7 HOH N 2 206 206 HOH HOH . 
BB 7 HOH P 1 244 244 HOH HOH . 
BB 7 HOH P 2 245 245 HOH HOH . 
BB 7 HOH P 3 246 246 HOH HOH . 
BB 7 HOH P 4 247 247 HOH HOH . 
BB 7 HOH P 5 248 248 HOH HOH . 
BB 7 HOH P 6 249 249 HOH HOH . 
CB 7 HOH I 1 281 281 HOH HOH . 
DB 7 HOH J 1 101 101 HOH HOH . 
DB 7 HOH J 2 102 102 HOH HOH . 
DB 7 HOH J 3 103 103 HOH HOH . 
EB 7 HOH M 1 205 205 HOH HOH . 
EB 7 HOH M 2 206 206 HOH HOH . 
FB 7 HOH O 1 244 244 HOH HOH . 
FB 7 HOH O 2 245 245 HOH HOH . 
FB 7 HOH O 3 247 247 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           I 
_atom_site.label_atom_id         I 
_atom_site.label_comp_id         IOD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         W 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               46.509 
_atom_site.Cartn_y               -9.493 
_atom_site.Cartn_z               26.812 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        21.03 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          I 
_atom_site.auth_comp_id          IOD 
_atom_site.auth_seq_id           279 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              77 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#