data_3KXM # _model_server_result.job_id FCRHgdfWLA0CjTX7XxivIg _model_server_result.datetime_utc '2024-11-19 15:29:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kxm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3KXM # _exptl.entry_id 3KXM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 550.89 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-methyl-2-[(4,5,6,7-tetrabromo-1-methyl-1H-benzimidazol-2-yl)sulfanyl]acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.04 _cell.angle_gamma 90 _cell.entry_id 3KXM _cell.length_a 142.185 _cell.length_b 60.533 _cell.length_c 45.873 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KXM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H9 Br4 N3 O S' _chem_comp.formula_weight 550.89 _chem_comp.id K74 _chem_comp.mon_nstd_flag . _chem_comp.name N-methyl-2-[(4,5,6,7-tetrabromo-1-methyl-1H-benzimidazol-2-yl)sulfanyl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 K74 doub 173 n y C1 C6 K74 sing 174 n y C1 BR32 K74 sing 175 n n C2 C3 K74 sing 176 n y C2 N13 K74 sing 177 n y C3 C4 K74 doub 178 n y C3 N17 K74 sing 179 n y C4 C5 K74 sing 180 n y C4 BR38 K74 sing 181 n n C5 C6 K74 doub 182 n y C5 BR36 K74 sing 183 n n C6 BR34 K74 sing 184 n n N13 C15 K74 doub 185 n y C15 N17 K74 sing 186 n y C15 S20 K74 sing 187 n n N17 C40 K74 sing 188 n n S20 C22 K74 sing 189 n n C22 C24 K74 sing 190 n n C24 N26 K74 sing 191 n n C24 O28 K74 doub 192 n n N26 C30 K74 sing 193 n n C22 H22 K74 sing 194 n n C22 H22A K74 sing 195 n n N26 HN26 K74 sing 196 n n C30 H30 K74 sing 197 n n C30 H30A K74 sing 198 n n C30 H30B K74 sing 199 n n C40 H40 K74 sing 200 n n C40 H40A K74 sing 201 n n C40 H40B K74 sing 202 n n # _atom_sites.entry_id 3KXM _atom_sites.fract_transf_matrix[1][1] 0.007033 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00163 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01652 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022377 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K74 A 1 1 1 K74 K74 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 334 7 HOH HOH . C 3 HOH A 7 335 8 HOH HOH . C 3 HOH A 8 336 9 HOH HOH . C 3 HOH A 9 337 10 HOH HOH . C 3 HOH A 10 338 11 HOH HOH . C 3 HOH A 11 339 12 HOH HOH . C 3 HOH A 12 340 13 HOH HOH . C 3 HOH A 13 341 14 HOH HOH . C 3 HOH A 14 342 15 HOH HOH . C 3 HOH A 15 343 16 HOH HOH . C 3 HOH A 16 344 17 HOH HOH . C 3 HOH A 17 345 18 HOH HOH . C 3 HOH A 18 346 19 HOH HOH . C 3 HOH A 19 347 20 HOH HOH . C 3 HOH A 20 348 21 HOH HOH . C 3 HOH A 21 349 22 HOH HOH . C 3 HOH A 22 350 23 HOH HOH . C 3 HOH A 23 351 24 HOH HOH . C 3 HOH A 24 352 25 HOH HOH . C 3 HOH A 25 353 26 HOH HOH . C 3 HOH A 26 354 27 HOH HOH . C 3 HOH A 27 355 28 HOH HOH . C 3 HOH A 28 356 29 HOH HOH . C 3 HOH A 29 357 30 HOH HOH . C 3 HOH A 30 358 31 HOH HOH . C 3 HOH A 31 359 32 HOH HOH . C 3 HOH A 32 360 33 HOH HOH . C 3 HOH A 33 361 34 HOH HOH . C 3 HOH A 34 362 35 HOH HOH . C 3 HOH A 35 363 36 HOH HOH . C 3 HOH A 36 364 37 HOH HOH . C 3 HOH A 37 365 38 HOH HOH . C 3 HOH A 38 366 39 HOH HOH . C 3 HOH A 39 367 40 HOH HOH . C 3 HOH A 40 368 41 HOH HOH . C 3 HOH A 41 369 42 HOH HOH . C 3 HOH A 42 370 43 HOH HOH . C 3 HOH A 43 371 44 HOH HOH . C 3 HOH A 44 372 45 HOH HOH . C 3 HOH A 45 373 46 HOH HOH . C 3 HOH A 46 374 47 HOH HOH . C 3 HOH A 47 375 48 HOH HOH . C 3 HOH A 48 376 49 HOH HOH . C 3 HOH A 49 377 50 HOH HOH . C 3 HOH A 50 378 51 HOH HOH . C 3 HOH A 51 379 52 HOH HOH . C 3 HOH A 52 380 53 HOH HOH . C 3 HOH A 53 381 54 HOH HOH . C 3 HOH A 54 382 55 HOH HOH . C 3 HOH A 55 383 56 HOH HOH . C 3 HOH A 56 384 57 HOH HOH . C 3 HOH A 57 385 58 HOH HOH . C 3 HOH A 58 386 59 HOH HOH . C 3 HOH A 59 387 60 HOH HOH . C 3 HOH A 60 388 61 HOH HOH . C 3 HOH A 61 389 62 HOH HOH . C 3 HOH A 62 390 63 HOH HOH . C 3 HOH A 63 391 64 HOH HOH . C 3 HOH A 64 392 65 HOH HOH . C 3 HOH A 65 393 66 HOH HOH . C 3 HOH A 66 394 67 HOH HOH . C 3 HOH A 67 395 68 HOH HOH . C 3 HOH A 68 396 69 HOH HOH . C 3 HOH A 69 397 70 HOH HOH . C 3 HOH A 70 398 71 HOH HOH . C 3 HOH A 71 399 72 HOH HOH . C 3 HOH A 72 400 73 HOH HOH . C 3 HOH A 73 401 74 HOH HOH . C 3 HOH A 74 402 75 HOH HOH . C 3 HOH A 75 403 76 HOH HOH . C 3 HOH A 76 404 77 HOH HOH . C 3 HOH A 77 405 78 HOH HOH . C 3 HOH A 78 406 79 HOH HOH . C 3 HOH A 79 407 80 HOH HOH . C 3 HOH A 80 408 81 HOH HOH . C 3 HOH A 81 409 82 HOH HOH . C 3 HOH A 82 410 83 HOH HOH . C 3 HOH A 83 411 84 HOH HOH . C 3 HOH A 84 412 85 HOH HOH . C 3 HOH A 85 413 86 HOH HOH . C 3 HOH A 86 414 87 HOH HOH . C 3 HOH A 87 415 88 HOH HOH . C 3 HOH A 88 416 89 HOH HOH . C 3 HOH A 89 417 90 HOH HOH . C 3 HOH A 90 418 91 HOH HOH . C 3 HOH A 91 419 92 HOH HOH . C 3 HOH A 92 420 93 HOH HOH . C 3 HOH A 93 421 94 HOH HOH . C 3 HOH A 94 422 95 HOH HOH . C 3 HOH A 95 423 96 HOH HOH . C 3 HOH A 96 424 97 HOH HOH . C 3 HOH A 97 425 98 HOH HOH . C 3 HOH A 98 426 99 HOH HOH . C 3 HOH A 99 428 101 HOH HOH . C 3 HOH A 100 429 102 HOH HOH . C 3 HOH A 101 430 103 HOH HOH . C 3 HOH A 102 431 104 HOH HOH . C 3 HOH A 103 432 105 HOH HOH . C 3 HOH A 104 433 106 HOH HOH . C 3 HOH A 105 434 107 HOH HOH . C 3 HOH A 106 435 108 HOH HOH . C 3 HOH A 107 436 109 HOH HOH . C 3 HOH A 108 437 110 HOH HOH . C 3 HOH A 109 438 111 HOH HOH . C 3 HOH A 110 439 112 HOH HOH . C 3 HOH A 111 440 113 HOH HOH . C 3 HOH A 112 441 114 HOH HOH . C 3 HOH A 113 442 115 HOH HOH . C 3 HOH A 114 443 116 HOH HOH . C 3 HOH A 115 444 117 HOH HOH . C 3 HOH A 116 445 118 HOH HOH . C 3 HOH A 117 446 119 HOH HOH . C 3 HOH A 118 447 120 HOH HOH . C 3 HOH A 119 448 121 HOH HOH . C 3 HOH A 120 449 122 HOH HOH . C 3 HOH A 121 450 123 HOH HOH . C 3 HOH A 122 451 124 HOH HOH . C 3 HOH A 123 452 125 HOH HOH . C 3 HOH A 124 453 126 HOH HOH . C 3 HOH A 125 454 127 HOH HOH . C 3 HOH A 126 455 128 HOH HOH . C 3 HOH A 127 456 129 HOH HOH . C 3 HOH A 128 457 130 HOH HOH . C 3 HOH A 129 458 131 HOH HOH . C 3 HOH A 130 459 132 HOH HOH . C 3 HOH A 131 460 133 HOH HOH . C 3 HOH A 132 461 134 HOH HOH . C 3 HOH A 133 462 135 HOH HOH . C 3 HOH A 134 463 136 HOH HOH . C 3 HOH A 135 464 137 HOH HOH . C 3 HOH A 136 465 138 HOH HOH . C 3 HOH A 137 466 139 HOH HOH . C 3 HOH A 138 468 141 HOH HOH . C 3 HOH A 139 469 142 HOH HOH . C 3 HOH A 140 470 143 HOH HOH . C 3 HOH A 141 471 144 HOH HOH . C 3 HOH A 142 472 145 HOH HOH . C 3 HOH A 143 473 146 HOH HOH . C 3 HOH A 144 474 147 HOH HOH . C 3 HOH A 145 475 148 HOH HOH . C 3 HOH A 146 476 149 HOH HOH . C 3 HOH A 147 477 150 HOH HOH . C 3 HOH A 148 478 151 HOH HOH . C 3 HOH A 149 479 152 HOH HOH . C 3 HOH A 150 480 153 HOH HOH . C 3 HOH A 151 481 154 HOH HOH . C 3 HOH A 152 482 155 HOH HOH . C 3 HOH A 153 483 156 HOH HOH . C 3 HOH A 154 484 157 HOH HOH . C 3 HOH A 155 485 158 HOH HOH . C 3 HOH A 156 486 159 HOH HOH . C 3 HOH A 157 487 160 HOH HOH . C 3 HOH A 158 488 161 HOH HOH . C 3 HOH A 159 489 162 HOH HOH . C 3 HOH A 160 490 163 HOH HOH . C 3 HOH A 161 491 164 HOH HOH . C 3 HOH A 162 492 165 HOH HOH . C 3 HOH A 163 493 166 HOH HOH . C 3 HOH A 164 494 167 HOH HOH . C 3 HOH A 165 495 168 HOH HOH . C 3 HOH A 166 496 169 HOH HOH . C 3 HOH A 167 497 170 HOH HOH . C 3 HOH A 168 498 171 HOH HOH . C 3 HOH A 169 499 172 HOH HOH . C 3 HOH A 170 500 173 HOH HOH . C 3 HOH A 171 501 174 HOH HOH . C 3 HOH A 172 502 175 HOH HOH . C 3 HOH A 173 503 176 HOH HOH . C 3 HOH A 174 504 177 HOH HOH . C 3 HOH A 175 505 178 HOH HOH . C 3 HOH A 176 506 179 HOH HOH . C 3 HOH A 177 507 180 HOH HOH . C 3 HOH A 178 508 181 HOH HOH . C 3 HOH A 179 509 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 K74 . . . B 2 23.064 7.313 18.126 1 88.22 ? C1 K74 1 A 1 HETATM 2 C C2 K74 . . . B 2 22.85 6.716 19.357 1 87.51 ? C2 K74 1 A 1 HETATM 3 C C3 K74 . . . B 2 21.866 7.184 20.229 1 86.48 ? C3 K74 1 A 1 HETATM 4 C C4 K74 . . . B 2 21.019 8.348 19.816 1 86.1 ? C4 K74 1 A 1 HETATM 5 C C5 K74 . . . B 2 21.263 8.918 18.563 1 85.6 ? C5 K74 1 A 1 HETATM 6 C C6 K74 . . . B 2 22.275 8.391 17.745 1 86.39 ? C6 K74 1 A 1 HETATM 7 N N13 K74 . . . B 2 23.465 5.677 19.934 1 86.94 ? N13 K74 1 A 1 HETATM 8 C C15 K74 . . . B 2 22.851 5.56 21.11 1 86.51 ? C15 K74 1 A 1 HETATM 9 N N17 K74 . . . B 2 21.867 6.435 21.363 1 85.94 ? N17 K74 1 A 1 HETATM 10 S S20 K74 . . . B 2 23.411 4.281 22.134 1 86.07 ? S20 K74 1 A 1 HETATM 11 C C22 K74 . . . B 2 23.69 2.861 21.093 1 89.53 ? C22 K74 1 A 1 HETATM 12 C C24 K74 . . . B 2 24.942 2.8 20.206 1 90.84 ? C24 K74 1 A 1 HETATM 13 N N26 K74 . . . B 2 25.066 1.674 19.478 1 92.36 ? N26 K74 1 A 1 HETATM 14 O O28 K74 . . . B 2 25.77 3.698 20.156 1 90.41 ? O28 K74 1 A 1 HETATM 15 C C30 K74 . . . B 2 26.162 1.383 18.564 1 91.58 ? C30 K74 1 A 1 HETATM 16 BR BR32 K74 . . . B 2 24.423 6.616 16.976 1 96.01 ? BR32 K74 1 A 1 HETATM 17 BR BR34 K74 . . . B 2 22.639 9.147 16.051 1 83.97 ? BR34 K74 1 A 1 HETATM 18 BR BR36 K74 . . . B 2 20.229 10.402 17.933 1 83.59 ? BR36 K74 1 A 1 HETATM 19 BR BR38 K74 . . . B 2 19.664 9.061 20.933 1 88.83 ? BR38 K74 1 A 1 HETATM 20 C C40 K74 . . . B 2 21.023 6.52 22.589 1 85.18 ? C40 K74 1 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #