data_3KXN # _model_server_result.job_id 5mvBQm68LH_EiRZd8EDnfw _model_server_result.datetime_utc '2024-11-26 13:20:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kxn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3KXN # _exptl.entry_id 3KXN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 621.722 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4,5,6,7-tetraiodo-1H-benzimidazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.37 _cell.angle_gamma 90 _cell.entry_id 3KXN _cell.length_a 143.839 _cell.length_b 60.901 _cell.length_c 46.015 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KXN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H2 I4 N2' _chem_comp.formula_weight 621.722 _chem_comp.id K8X _chem_comp.mon_nstd_flag . _chem_comp.name 4,5,6,7-tetraiodo-1H-benzimidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag I13 C1 K8X sing 173 n n C2 C1 K8X doub 174 n y C1 C6 K8X sing 175 n y N21 C2 K8X sing 176 n y C2 C3 K8X sing 177 n y N25 C3 K8X sing 178 n y C3 C4 K8X doub 179 n y C4 C5 K8X sing 180 n y C4 I19 K8X sing 181 n n C6 C5 K8X doub 182 n y C5 I17 K8X sing 183 n n C6 I15 K8X sing 184 n n C23 N21 K8X sing 185 n y C23 N25 K8X doub 186 n y C23 H23 K8X sing 187 n n N21 HN21 K8X sing 188 n n # _atom_sites.entry_id 3KXN _atom_sites.fract_transf_matrix[1][1] 0.006952 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001652 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022337 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K8X A 1 1 1 K8X K8X . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 334 1 HOH HOH . C 3 HOH A 7 335 7 HOH HOH . C 3 HOH A 8 336 8 HOH HOH . C 3 HOH A 9 337 9 HOH HOH . C 3 HOH A 10 338 10 HOH HOH . C 3 HOH A 11 339 11 HOH HOH . C 3 HOH A 12 340 12 HOH HOH . C 3 HOH A 13 341 13 HOH HOH . C 3 HOH A 14 342 14 HOH HOH . C 3 HOH A 15 343 15 HOH HOH . C 3 HOH A 16 344 16 HOH HOH . C 3 HOH A 17 345 17 HOH HOH . C 3 HOH A 18 346 18 HOH HOH . C 3 HOH A 19 347 19 HOH HOH . C 3 HOH A 20 348 20 HOH HOH . C 3 HOH A 21 349 21 HOH HOH . C 3 HOH A 22 350 22 HOH HOH . C 3 HOH A 23 351 23 HOH HOH . C 3 HOH A 24 352 24 HOH HOH . C 3 HOH A 25 353 25 HOH HOH . C 3 HOH A 26 354 26 HOH HOH . C 3 HOH A 27 355 27 HOH HOH . C 3 HOH A 28 356 28 HOH HOH . C 3 HOH A 29 357 29 HOH HOH . C 3 HOH A 30 358 30 HOH HOH . C 3 HOH A 31 359 31 HOH HOH . C 3 HOH A 32 360 32 HOH HOH . C 3 HOH A 33 361 33 HOH HOH . C 3 HOH A 34 362 34 HOH HOH . C 3 HOH A 35 363 35 HOH HOH . C 3 HOH A 36 364 36 HOH HOH . C 3 HOH A 37 365 37 HOH HOH . C 3 HOH A 38 366 38 HOH HOH . C 3 HOH A 39 367 39 HOH HOH . C 3 HOH A 40 368 40 HOH HOH . C 3 HOH A 41 369 41 HOH HOH . C 3 HOH A 42 370 42 HOH HOH . C 3 HOH A 43 371 43 HOH HOH . C 3 HOH A 44 372 44 HOH HOH . C 3 HOH A 45 373 45 HOH HOH . C 3 HOH A 46 374 46 HOH HOH . C 3 HOH A 47 375 47 HOH HOH . C 3 HOH A 48 376 48 HOH HOH . C 3 HOH A 49 377 49 HOH HOH . C 3 HOH A 50 378 50 HOH HOH . C 3 HOH A 51 379 51 HOH HOH . C 3 HOH A 52 380 52 HOH HOH . C 3 HOH A 53 381 53 HOH HOH . C 3 HOH A 54 382 54 HOH HOH . C 3 HOH A 55 383 55 HOH HOH . C 3 HOH A 56 384 56 HOH HOH . C 3 HOH A 57 385 57 HOH HOH . C 3 HOH A 58 386 58 HOH HOH . C 3 HOH A 59 387 59 HOH HOH . C 3 HOH A 60 388 60 HOH HOH . C 3 HOH A 61 389 61 HOH HOH . C 3 HOH A 62 390 62 HOH HOH . C 3 HOH A 63 391 63 HOH HOH . C 3 HOH A 64 392 64 HOH HOH . C 3 HOH A 65 393 65 HOH HOH . C 3 HOH A 66 394 66 HOH HOH . C 3 HOH A 67 395 67 HOH HOH . C 3 HOH A 68 396 68 HOH HOH . C 3 HOH A 69 397 69 HOH HOH . C 3 HOH A 70 398 70 HOH HOH . C 3 HOH A 71 399 71 HOH HOH . C 3 HOH A 72 400 72 HOH HOH . C 3 HOH A 73 401 73 HOH HOH . C 3 HOH A 74 402 74 HOH HOH . C 3 HOH A 75 403 75 HOH HOH . C 3 HOH A 76 404 76 HOH HOH . C 3 HOH A 77 405 77 HOH HOH . C 3 HOH A 78 406 78 HOH HOH . C 3 HOH A 79 407 79 HOH HOH . C 3 HOH A 80 408 80 HOH HOH . C 3 HOH A 81 409 81 HOH HOH . C 3 HOH A 82 410 82 HOH HOH . C 3 HOH A 83 411 83 HOH HOH . C 3 HOH A 84 412 84 HOH HOH . C 3 HOH A 85 413 85 HOH HOH . C 3 HOH A 86 414 86 HOH HOH . C 3 HOH A 87 415 87 HOH HOH . C 3 HOH A 88 416 88 HOH HOH . C 3 HOH A 89 417 89 HOH HOH . C 3 HOH A 90 418 90 HOH HOH . C 3 HOH A 91 419 91 HOH HOH . C 3 HOH A 92 420 92 HOH HOH . C 3 HOH A 93 421 93 HOH HOH . C 3 HOH A 94 422 94 HOH HOH . C 3 HOH A 95 423 95 HOH HOH . C 3 HOH A 96 424 96 HOH HOH . C 3 HOH A 97 425 97 HOH HOH . C 3 HOH A 98 426 98 HOH HOH . C 3 HOH A 99 427 99 HOH HOH . C 3 HOH A 100 428 100 HOH HOH . C 3 HOH A 101 429 101 HOH HOH . C 3 HOH A 102 430 102 HOH HOH . C 3 HOH A 103 431 103 HOH HOH . C 3 HOH A 104 432 104 HOH HOH . C 3 HOH A 105 433 105 HOH HOH . C 3 HOH A 106 434 106 HOH HOH . C 3 HOH A 107 435 107 HOH HOH . C 3 HOH A 108 436 108 HOH HOH . C 3 HOH A 109 437 109 HOH HOH . C 3 HOH A 110 438 110 HOH HOH . C 3 HOH A 111 439 111 HOH HOH . C 3 HOH A 112 440 112 HOH HOH . C 3 HOH A 113 441 113 HOH HOH . C 3 HOH A 114 442 114 HOH HOH . C 3 HOH A 115 443 115 HOH HOH . C 3 HOH A 116 444 116 HOH HOH . C 3 HOH A 117 445 117 HOH HOH . C 3 HOH A 118 446 118 HOH HOH . C 3 HOH A 119 447 119 HOH HOH . C 3 HOH A 120 448 120 HOH HOH . C 3 HOH A 121 449 121 HOH HOH . C 3 HOH A 122 450 122 HOH HOH . C 3 HOH A 123 451 123 HOH HOH . C 3 HOH A 124 452 124 HOH HOH . C 3 HOH A 125 453 125 HOH HOH . C 3 HOH A 126 454 126 HOH HOH . C 3 HOH A 127 455 127 HOH HOH . C 3 HOH A 128 456 128 HOH HOH . C 3 HOH A 129 457 129 HOH HOH . C 3 HOH A 130 458 130 HOH HOH . C 3 HOH A 131 459 131 HOH HOH . C 3 HOH A 132 460 132 HOH HOH . C 3 HOH A 133 461 133 HOH HOH . C 3 HOH A 134 462 134 HOH HOH . C 3 HOH A 135 463 135 HOH HOH . C 3 HOH A 136 464 136 HOH HOH . C 3 HOH A 137 465 137 HOH HOH . C 3 HOH A 138 466 138 HOH HOH . C 3 HOH A 139 467 139 HOH HOH . C 3 HOH A 140 468 140 HOH HOH . C 3 HOH A 141 469 141 HOH HOH . C 3 HOH A 142 470 142 HOH HOH . C 3 HOH A 143 471 143 HOH HOH . C 3 HOH A 144 472 144 HOH HOH . C 3 HOH A 145 473 145 HOH HOH . C 3 HOH A 146 474 146 HOH HOH . C 3 HOH A 147 475 147 HOH HOH . C 3 HOH A 148 476 148 HOH HOH . C 3 HOH A 149 477 149 HOH HOH . C 3 HOH A 150 478 150 HOH HOH . C 3 HOH A 151 479 151 HOH HOH . C 3 HOH A 152 480 152 HOH HOH . C 3 HOH A 153 481 153 HOH HOH . C 3 HOH A 154 482 154 HOH HOH . C 3 HOH A 155 483 155 HOH HOH . C 3 HOH A 156 484 156 HOH HOH . C 3 HOH A 157 485 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 K8X . A . B 2 21.541 8.206 19.985 0.5 52.35 ? C1 K8X 1 A 1 HETATM 2 C C1 K8X . B . B 2 23.283 7.167 18.518 0.5 57.63 ? C1 K8X 1 A 1 HETATM 3 C C2 K8X . A . B 2 22.484 7.441 19.31 0.5 53.08 ? C2 K8X 1 A 1 HETATM 4 C C2 K8X . B . B 2 23.021 6.696 19.799 0.5 55.29 ? C2 K8X 1 A 1 HETATM 5 C C3 K8X . A . B 2 23.067 6.349 19.936 0.5 55.18 ? C3 K8X 1 A 1 HETATM 6 C C3 K8X . B . B 2 22.101 7.351 20.603 0.5 51.41 ? C3 K8X 1 A 1 HETATM 7 C C4 K8X . A . B 2 22.707 6.022 21.238 0.5 57.35 ? C4 K8X 1 A 1 HETATM 8 C C4 K8X . B . B 2 21.441 8.477 20.127 0.5 50.02 ? C4 K8X 1 A 1 HETATM 9 C C5 K8X . A . B 2 21.767 6.787 21.907 0.5 55.4 ? C5 K8X 1 A 1 HETATM 10 C C5 K8X . B . B 2 21.705 8.943 18.851 0.5 52.26 ? C5 K8X 1 A 1 HETATM 11 C C6 K8X . A . B 2 21.185 7.877 21.281 0.5 53.64 ? C6 K8X 1 A 1 HETATM 12 C C6 K8X . B . B 2 22.624 8.29 18.047 0.5 54.22 ? C6 K8X 1 A 1 HETATM 13 I I13 K8X . A . B 2 20.66 9.852 19.043 0.5 53.43 ? I13 K8X 1 A 1 HETATM 14 I I13 K8X . B . B 2 24.67 6.182 17.303 0.5 74.68 ? I13 K8X 1 A 1 HETATM 15 I I15 K8X . A . B 2 19.766 9.027 22.297 0.5 49.38 ? I15 K8X 1 A 1 HETATM 16 I I15 K8X . B . B 2 23.016 8.999 16.121 0.5 50.8 ? I15 K8X 1 A 1 HETATM 17 I I17 K8X . A . B 2 21.225 6.296 23.864 0.5 58.1 ? I17 K8X 1 A 1 HETATM 18 I I17 K8X . B . B 2 20.713 10.638 18.134 0.5 54.99 ? I17 K8X 1 A 1 HETATM 19 I I19 K8X . A . B 2 23.584 4.378 22.185 0.5 65.4 ? I19 K8X 1 A 1 HETATM 20 I I19 K8X . B . B 2 20.053 9.466 21.337 0.5 42.15 ? I19 K8X 1 A 1 HETATM 21 N N21 K8X . A . B 2 23.01 7.526 18.071 0.5 51.45 ? N21 K8X 1 A 1 HETATM 22 N N21 K8X . B . B 2 23.503 5.651 20.502 0.5 53.37 ? N21 K8X 1 A 1 HETATM 23 C C23 K8X . A . B 2 23.897 6.516 17.926 0.5 54.18 ? C23 K8X 1 A 1 HETATM 24 C C23 K8X . B . B 2 22.901 5.651 21.712 0.5 53.56 ? C23 K8X 1 A 1 HETATM 25 N N25 K8X . A . B 2 23.929 5.798 19.071 0.5 53.47 ? N25 K8X 1 A 1 HETATM 26 N N25 K8X . B . B 2 22.043 6.694 21.77 0.5 51.65 ? N25 K8X 1 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #