data_3KYK # _model_server_result.job_id xtp-J6ZZPIkkYJmnItn3NQ _model_server_result.datetime_utc '2024-11-23 16:31:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kyk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":229}' # _entry.id 3KYK # _exptl.entry_id 3KYK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KYK _cell.length_a 90.632 _cell.length_b 90.632 _cell.length_c 215.041 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KYK _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? disulf ? disulf2 A SG CYS 146 H CYS 146 1_555 A SG CYS 202 H CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? disulf ? disulf4 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 3KYK _atom_sites.fract_transf_matrix[1][1] 0.011034 _atom_sites.fract_transf_matrix[1][2] 0.00637 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 H 1 228 1 SO4 SO4 . D 3 SO4 H 1 229 2 SO4 SO4 . E 3 SO4 H 1 230 4 SO4 SO4 . F 3 SO4 L 1 215 5 SO4 SO4 . G 4 HOH H 1 231 6 HOH HOH . G 4 HOH H 2 232 7 HOH HOH . G 4 HOH H 3 233 13 HOH HOH . G 4 HOH H 4 234 17 HOH HOH . G 4 HOH H 5 235 18 HOH HOH . G 4 HOH H 6 236 23 HOH HOH . G 4 HOH H 7 237 25 HOH HOH . G 4 HOH H 8 238 26 HOH HOH . G 4 HOH H 9 239 27 HOH HOH . G 4 HOH H 10 240 28 HOH HOH . G 4 HOH H 11 241 34 HOH HOH . G 4 HOH H 12 242 43 HOH HOH . G 4 HOH H 13 243 49 HOH HOH . G 4 HOH H 14 244 4 HOH HOH . H 4 HOH L 1 216 2 HOH HOH . H 4 HOH L 2 217 3 HOH HOH . H 4 HOH L 3 219 10 HOH HOH . H 4 HOH L 4 220 11 HOH HOH . H 4 HOH L 5 221 12 HOH HOH . H 4 HOH L 6 222 16 HOH HOH . H 4 HOH L 7 223 19 HOH HOH . H 4 HOH L 8 224 20 HOH HOH . H 4 HOH L 9 225 21 HOH HOH . H 4 HOH L 10 226 22 HOH HOH . H 4 HOH L 11 227 24 HOH HOH . H 4 HOH L 12 228 29 HOH HOH . H 4 HOH L 13 229 30 HOH HOH . H 4 HOH L 14 230 31 HOH HOH . H 4 HOH L 15 231 35 HOH HOH . H 4 HOH L 16 232 36 HOH HOH . H 4 HOH L 17 233 38 HOH HOH . H 4 HOH L 18 234 39 HOH HOH . H 4 HOH L 19 235 40 HOH HOH . H 4 HOH L 20 236 41 HOH HOH . H 4 HOH L 21 237 42 HOH HOH . H 4 HOH L 22 238 46 HOH HOH . H 4 HOH L 23 239 47 HOH HOH . H 4 HOH L 24 240 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 3 5.633 20.385 16.686 1 39.52 ? S SO4 229 H 1 HETATM 2 O O1 SO4 . . . D 3 6.378 21.307 15.82 1 40.39 ? O1 SO4 229 H 1 HETATM 3 O O2 SO4 . . . D 3 4.471 19.84 15.98 1 39.78 ? O2 SO4 229 H 1 HETATM 4 O O3 SO4 . . . D 3 6.526 19.288 16.992 1 39.5 ? O3 SO4 229 H 1 HETATM 5 O O4 SO4 . . . D 3 5.195 21.098 17.893 1 38.75 ? O4 SO4 229 H 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #