data_3KZ1 # _model_server_result.job_id mUkcKyOZ2UdzKqGTnVpo9Q _model_server_result.datetime_utc '2024-11-23 20:45:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":550}' # _entry.id 3KZ1 # _exptl.entry_id 3KZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KZ1 _cell.length_a 98.166 _cell.length_b 111.836 _cell.length_c 138.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G,H,I,L 1 1 B,C,E,F,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OG1 THR 20 E THR 19 1_555 E MG MG . E MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc2 C OG1 THR 38 E THR 37 1_555 E MG MG . E MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc3 F O2G GSP . E GSP 538 1_555 E MG MG . E MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc4 F O2B GSP . E GSP 538 1_555 E MG MG . E MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc5 D OG1 THR 20 F THR 19 1_555 G MG MG . F MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc6 D OG1 THR 38 F THR 37 1_555 G MG MG . F MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc7 H O2G GSP . F GSP 538 1_555 G MG MG . F MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc8 H O2B GSP . F GSP 538 1_555 G MG MG . F MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3KZ1 _atom_sites.fract_transf_matrix[1][1] 0.010187 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008942 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG E 1 550 550 MG MG . F 4 GSP E 1 538 538 GSP GSP . G 3 MG F 1 550 550 MG MG . H 4 GSP F 1 538 538 GSP GSP . I 5 HOH A 1 200 200 HOH HOH . I 5 HOH A 2 201 201 HOH HOH . I 5 HOH A 3 202 202 HOH HOH . I 5 HOH A 4 203 203 HOH HOH . I 5 HOH A 5 204 204 HOH HOH . I 5 HOH A 6 205 205 HOH HOH . I 5 HOH A 7 206 206 HOH HOH . I 5 HOH A 8 207 207 HOH HOH . I 5 HOH A 9 208 208 HOH HOH . I 5 HOH A 10 209 209 HOH HOH . I 5 HOH A 11 210 210 HOH HOH . I 5 HOH A 12 211 211 HOH HOH . I 5 HOH A 13 212 212 HOH HOH . I 5 HOH A 14 213 213 HOH HOH . I 5 HOH A 15 214 214 HOH HOH . I 5 HOH A 16 215 215 HOH HOH . I 5 HOH A 17 216 216 HOH HOH . I 5 HOH A 18 217 217 HOH HOH . I 5 HOH A 19 218 218 HOH HOH . I 5 HOH A 20 219 219 HOH HOH . I 5 HOH A 21 220 220 HOH HOH . I 5 HOH A 22 221 221 HOH HOH . I 5 HOH A 23 222 222 HOH HOH . I 5 HOH A 24 223 223 HOH HOH . I 5 HOH A 25 224 224 HOH HOH . I 5 HOH A 26 225 225 HOH HOH . I 5 HOH A 27 226 226 HOH HOH . I 5 HOH A 28 227 227 HOH HOH . I 5 HOH A 29 228 228 HOH HOH . I 5 HOH A 30 229 229 HOH HOH . I 5 HOH A 31 230 230 HOH HOH . I 5 HOH A 32 231 231 HOH HOH . I 5 HOH A 33 232 232 HOH HOH . I 5 HOH A 34 233 233 HOH HOH . I 5 HOH A 35 234 234 HOH HOH . I 5 HOH A 36 235 235 HOH HOH . J 5 HOH B 1 200 200 HOH HOH . J 5 HOH B 2 201 201 HOH HOH . J 5 HOH B 3 202 202 HOH HOH . J 5 HOH B 4 203 203 HOH HOH . J 5 HOH B 5 204 204 HOH HOH . J 5 HOH B 6 205 205 HOH HOH . J 5 HOH B 7 206 206 HOH HOH . J 5 HOH B 8 207 207 HOH HOH . J 5 HOH B 9 208 208 HOH HOH . J 5 HOH B 10 209 209 HOH HOH . J 5 HOH B 11 210 210 HOH HOH . J 5 HOH B 12 211 211 HOH HOH . J 5 HOH B 13 212 212 HOH HOH . J 5 HOH B 14 213 213 HOH HOH . J 5 HOH B 15 214 214 HOH HOH . J 5 HOH B 16 215 215 HOH HOH . J 5 HOH B 17 216 216 HOH HOH . J 5 HOH B 18 217 217 HOH HOH . K 5 HOH E 1 200 200 HOH HOH . K 5 HOH E 2 201 201 HOH HOH . K 5 HOH E 3 202 202 HOH HOH . K 5 HOH E 4 203 203 HOH HOH . K 5 HOH E 5 204 204 HOH HOH . K 5 HOH E 6 205 205 HOH HOH . K 5 HOH E 7 206 206 HOH HOH . K 5 HOH E 8 207 207 HOH HOH . K 5 HOH E 9 208 208 HOH HOH . K 5 HOH E 10 209 209 HOH HOH . K 5 HOH E 11 210 210 HOH HOH . K 5 HOH E 12 211 211 HOH HOH . L 5 HOH F 1 200 200 HOH HOH . L 5 HOH F 2 201 201 HOH HOH . L 5 HOH F 3 202 202 HOH HOH . L 5 HOH F 4 203 203 HOH HOH . L 5 HOH F 5 204 204 HOH HOH . L 5 HOH F 6 205 205 HOH HOH . L 5 HOH F 7 206 206 HOH HOH . L 5 HOH F 8 207 207 HOH HOH . L 5 HOH F 9 208 208 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 10.129 _atom_site.Cartn_y 0.215 _atom_site.Cartn_z 4.768 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 550 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #