data_3KZI # _model_server_result.job_id GWz3MG2jVPwdJzC6zWzwDA _model_server_result.datetime_utc '2024-12-21 16:23:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kzi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":361}' # _entry.id 3KZI # _exptl.entry_id 3KZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 20 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KZI _cell.length_a 119.89 _cell.length_b 224.69 _cell.length_c 337.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonadecameric _pdbx_struct_assembly.oligomeric_count 19 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 20 _struct_asym.id T _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 M SG CYS 19 O CYS 45 1_555 M SG CYS 44 O CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc1 A OD2 ASP 170 A ASP 170 1_555 Z MN4 OEC . A OEC 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc2 A OD1 ASP 170 A ASP 170 1_555 Z CA1 OEC . A OEC 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc3 A OE2 GLU 189 A GLU 189 1_555 Z MN1 OEC . A OEC 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.727 ? metalc ? metalc4 A OE1 GLU 189 A GLU 189 1_555 Z CA1 OEC . A OEC 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc5 A NE2 HIS 215 A HIS 215 1_555 T FE FE2 . A FE2 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc6 A NE2 HIS 272 A HIS 272 1_555 T FE FE2 . A FE2 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc7 A NE2 HIS 332 A HIS 332 1_555 Z MN1 OEC . A OEC 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc8 A OE1 GLU 333 A GLU 333 1_555 Z MN3 OEC . A OEC 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc9 A OD1 ASP 342 A ASP 342 1_555 Z MN2 OEC . A OEC 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc10 A OD2 ASP 342 A ASP 342 1_555 Z MN1 OEC . A OEC 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc11 A O ALA 344 A ALA 344 1_555 Z CA1 OEC . A OEC 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc12 A O ALA 344 A ALA 344 1_555 Z MN2 OEC . A OEC 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc13 T FE FE2 . A FE2 361 1_555 D NE2 HIS 214 D HIS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc14 T FE FE2 . A FE2 361 1_555 D NE2 HIS 268 D HIS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc15 T FE FE2 . A FE2 361 1_555 ZB O3 BCT . D BCT 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc16 T FE FE2 . A FE2 361 1_555 ZB O2 BCT . D BCT 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc17 Z MN3 OEC . A OEC 368 1_555 C OE2 GLU 342 C GLU 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc18 Z MN2 OEC . A OEC 368 1_555 C OE1 GLU 342 C GLU 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc19 C OD1 ASN 27 C ASN 39 1_555 PB MG CLA . C CLA 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc20 E NE2 HIS 22 E HIS 23 1_555 KC FE HEM . F HEM 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc21 F O ARG 44 F ARG 45 1_555 MC CA CA . F CA 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.161 ? metalc ? metalc22 J OD2 ASP 10 K ASP 19 1_555 TC CA CA . K CA 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc23 J OD1 ASP 14 K ASP 23 1_555 TC CA CA . K CA 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc24 J OD2 ASP 14 K ASP 23 1_555 TC CA CA . K CA 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? metalc ? metalc25 M OE1 GLU 114 O GLU 140 1_555 WC CA CA . O CA 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc26 P NE2 HIS 41 V HIS 67 1_555 ZC FE HEM . V HEM 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc27 P NE2 HIS 92 V HIS 118 1_555 ZC FE HEM . V HEM 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? # _chem_comp.formula 'Fe 2' _chem_comp.formula_weight 55.845 _chem_comp.id FE2 _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3KZI _atom_sites.fract_transf_matrix[1][1] 0.008341 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002965 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code T 20 FE2 A 1 361 361 FE2 FE2 . U 21 CLA A 1 362 362 CLA CLA . V 21 CLA A 1 363 363 CLA CLA . W 22 PHO A 1 365 365 PHO PHO . X 21 CLA A 1 366 366 CLA CLA . Y 23 MES A 1 367 367 MES MES . Z 24 OEC A 1 368 368 OEC OEC . AA 25 BCR A 1 369 369 BCR BCR . BA 26 LHG A 1 371 371 LHG LHG . CA 27 LMG A 1 373 373 LMG LMG . DA 28 DGD A 1 375 375 DGD DGD . EA 29 LMT A 1 376 376 LMT LMT . FA 21 CLA A 1 364 364 CLA CLA . GA 21 CLA B 1 511 511 CLA CLA . HA 21 CLA B 1 512 512 CLA CLA . IA 21 CLA B 1 513 513 CLA CLA . JA 21 CLA B 1 514 514 CLA CLA . KA 21 CLA B 1 515 515 CLA CLA . LA 21 CLA B 1 516 516 CLA CLA . MA 21 CLA B 1 517 517 CLA CLA . NA 21 CLA B 1 518 518 CLA CLA . OA 21 CLA B 1 519 519 CLA CLA . PA 21 CLA B 1 520 520 CLA CLA . QA 21 CLA B 1 521 521 CLA CLA . RA 21 CLA B 1 522 522 CLA CLA . SA 21 CLA B 1 523 523 CLA CLA . TA 21 CLA B 1 524 524 CLA CLA . UA 21 CLA B 1 525 525 CLA CLA . VA 21 CLA B 1 526 526 CLA CLA . WA 25 BCR B 1 527 527 BCR BCR . XA 25 BCR B 1 529 529 BCR BCR . YA 25 BCR B 1 530 530 BCR BCR . ZA 27 LMG B 1 531 531 LMG LMG . AB 28 DGD B 1 533 533 DGD DGD . BB 29 LMT B 1 535 535 LMT LMT . CB 28 DGD B 1 528 208 DGD DGD . DB 28 DGD C 1 474 370 DGD DGD . EB 30 SQD C 1 475 372 SQD SQD . FB 26 LHG C 1 476 374 LHG LHG . GB 21 CLA C 1 477 474 CLA CLA . HB 21 CLA C 1 478 475 CLA CLA . IB 21 CLA C 1 479 476 CLA CLA . JB 21 CLA C 1 480 477 CLA CLA . KB 21 CLA C 1 481 478 CLA CLA . LB 21 CLA C 1 482 479 CLA CLA . MB 21 CLA C 1 483 480 CLA CLA . NB 21 CLA C 1 484 481 CLA CLA . OB 21 CLA C 1 485 482 CLA CLA . PB 21 CLA C 1 486 484 CLA CLA . QB 21 CLA C 1 487 485 CLA CLA . RB 21 CLA C 1 488 486 CLA CLA . SB 25 BCR C 1 489 487 BCR BCR . TB 25 BCR C 1 490 488 BCR BCR . UB 28 DGD C 1 491 489 DGD DGD . VB 28 DGD C 1 492 490 DGD DGD . WB 28 DGD C 1 493 491 DGD DGD . XB 27 LMG C 1 494 493 LMG LMG . YB 29 LMT D 1 536 536 LMT LMT . ZB 31 BCT D 1 353 353 BCT BCT . AC 21 CLA D 1 354 354 CLA CLA . BC 22 PHO D 1 355 355 PHO PHO . CC 21 CLA D 1 356 356 CLA CLA . DC 32 PL9 D 1 357 357 PL9 PL9 . EC 25 BCR D 1 358 358 BCR BCR . FC 27 LMG D 1 359 359 LMG LMG . GC 27 LMG D 1 360 360 LMG LMG . HC 30 SQD D 1 361 361 SQD SQD . IC 28 DGD D 1 362 362 DGD DGD . JC 29 LMT D 1 363 363 LMT LMT . KC 33 HEM F 1 85 85 HEM HEM . LC 30 SQD F 1 224 224 SQD SQD . MC 34 CA F 1 225 225 CA CA . NC 27 LMG I 1 220 220 LMG LMG . OC 29 LMT I 1 274 274 LMT LMT . PC 27 LMG J 1 492 492 LMG LMG . QC 25 BCR J 1 115 115 BCR BCR . RC 25 BCR J 1 112 112 BCR BCR . SC 21 CLA K 1 483 483 CLA CLA . TC 34 CA K 1 56 56 CA CA . UC 30 SQD L 1 213 213 SQD SQD . VC 27 LMG M 1 217 217 LMG LMG . WC 34 CA O 1 273 273 CA CA . XC 29 LMT O 1 274 227 LMT LMT . YC 29 LMT T 1 226 226 LMT LMT . ZC 33 HEM V 1 164 164 HEM HEM . AD 25 BCR X 1 107 107 BCR BCR . BD 25 BCR Z 1 116 116 BCR BCR . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE2 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id T _atom_site.label_entity_id 20 _atom_site.Cartn_x 28.957 _atom_site.Cartn_y -32.821 _atom_site.Cartn_z -24.688 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 160.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE2 _atom_site.auth_seq_id 361 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 1 #