data_3KZK # _model_server_result.job_id r02D9AZsrbV4Et65Oh47_Q _model_server_result.datetime_utc '2024-10-14 00:25:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kzk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":345}' # _entry.id 3KZK # _exptl.entry_id 3KZK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 217.222 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(S)-2-ACETAMIDO-5-UREIDOPENTANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KZK _cell.length_a 129.446 _cell.length_b 129.446 _cell.length_c 129.446 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KZK _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_665 -z+3/2,-x+1,y+1/2 0 0 -1 -1 0 0 0 1 0 194.169 129.446 64.723 3 'crystal symmetry operation' 10_646 -y+1,z-1/2,-x+3/2 0 -1 0 0 0 1 -1 0 0 129.446 -64.723 194.169 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id KCX _struct_conn.ptnr1_label_seq_id 322 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id KCX _struct_conn.ptnr1_auth_seq_id 302 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id ALA _struct_conn.ptnr2_label_seq_id 323 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ALA _struct_conn.ptnr2_auth_seq_id 303 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.328 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H15 N3 O4' _chem_comp.formula_weight 217.222 _chem_comp.id OLN _chem_comp.mon_nstd_flag . _chem_comp.name '(S)-2-ACETAMIDO-5-UREIDOPENTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-ACETYL-L-CITRULLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA C OLN sing 263 n n CA CB OLN sing 264 n n CA N1 OLN sing 265 n n CA HA OLN sing 266 n n C O OLN doub 267 n n C OXT OLN sing 268 n n OXT HO OLN sing 269 n n CB CG OLN sing 270 n n CB HB1 OLN sing 271 n n CB HB2 OLN sing 272 n n CG CD OLN sing 273 n n CG HG1 OLN sing 274 n n CG HG2 OLN sing 275 n n CD NE OLN sing 276 n n CD HD1 OLN sing 277 n n CD HD2 OLN sing 278 n n NE CZ OLN sing 279 n n NE HNE OLN sing 280 n n CZ O2 OLN doub 281 n n CZ NH2 OLN sing 282 n n NH2 HH21 OLN sing 283 n n NH2 HH22 OLN sing 284 n n N1 C1 OLN sing 285 n n N1 HN1 OLN sing 286 n n C1 O1 OLN doub 287 n n C1 C2 OLN sing 288 n n C2 H21 OLN sing 289 n n C2 H22 OLN sing 290 n n C2 H23 OLN sing 291 n n # _atom_sites.entry_id 3KZK _atom_sites.fract_transf_matrix[1][1] 0.007725 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLN A 1 345 345 OLN OLN . C 3 SO4 A 1 349 349 SO4 SO4 . D 3 SO4 A 1 350 350 SO4 SO4 . E 4 HOH A 1 340 1 HOH HOH . E 4 HOH A 2 341 2 HOH HOH . E 4 HOH A 3 342 3 HOH HOH . E 4 HOH A 4 343 4 HOH HOH . E 4 HOH A 5 344 5 HOH HOH . E 4 HOH A 6 346 6 HOH HOH . E 4 HOH A 7 347 7 HOH HOH . E 4 HOH A 8 348 8 HOH HOH . E 4 HOH A 9 351 9 HOH HOH . E 4 HOH A 10 352 10 HOH HOH . E 4 HOH A 11 353 11 HOH HOH . E 4 HOH A 12 354 12 HOH HOH . E 4 HOH A 13 355 13 HOH HOH . E 4 HOH A 14 356 14 HOH HOH . E 4 HOH A 15 357 15 HOH HOH . E 4 HOH A 16 358 16 HOH HOH . E 4 HOH A 17 359 17 HOH HOH . E 4 HOH A 18 360 18 HOH HOH . E 4 HOH A 19 361 19 HOH HOH . E 4 HOH A 20 362 20 HOH HOH . E 4 HOH A 21 363 21 HOH HOH . E 4 HOH A 22 364 22 HOH HOH . E 4 HOH A 23 365 23 HOH HOH . E 4 HOH A 24 366 24 HOH HOH . E 4 HOH A 25 367 25 HOH HOH . E 4 HOH A 26 368 26 HOH HOH . E 4 HOH A 27 369 27 HOH HOH . E 4 HOH A 28 370 28 HOH HOH . E 4 HOH A 29 371 29 HOH HOH . E 4 HOH A 30 372 30 HOH HOH . E 4 HOH A 31 373 31 HOH HOH . E 4 HOH A 32 374 32 HOH HOH . E 4 HOH A 33 375 33 HOH HOH . E 4 HOH A 34 376 34 HOH HOH . E 4 HOH A 35 377 35 HOH HOH . E 4 HOH A 36 378 36 HOH HOH . E 4 HOH A 37 379 37 HOH HOH . E 4 HOH A 38 380 38 HOH HOH . E 4 HOH A 39 381 39 HOH HOH . E 4 HOH A 40 382 40 HOH HOH . E 4 HOH A 41 383 41 HOH HOH . E 4 HOH A 42 384 42 HOH HOH . E 4 HOH A 43 385 43 HOH HOH . E 4 HOH A 44 386 44 HOH HOH . E 4 HOH A 45 387 45 HOH HOH . E 4 HOH A 46 388 46 HOH HOH . E 4 HOH A 47 389 47 HOH HOH . E 4 HOH A 48 390 48 HOH HOH . E 4 HOH A 49 391 49 HOH HOH . E 4 HOH A 50 392 50 HOH HOH . E 4 HOH A 51 393 51 HOH HOH . E 4 HOH A 52 394 52 HOH HOH . E 4 HOH A 53 395 53 HOH HOH . E 4 HOH A 54 396 54 HOH HOH . E 4 HOH A 55 397 55 HOH HOH . E 4 HOH A 56 398 56 HOH HOH . E 4 HOH A 57 399 57 HOH HOH . E 4 HOH A 58 400 58 HOH HOH . E 4 HOH A 59 401 59 HOH HOH . E 4 HOH A 60 402 60 HOH HOH . E 4 HOH A 61 403 61 HOH HOH . E 4 HOH A 62 404 62 HOH HOH . E 4 HOH A 63 405 63 HOH HOH . E 4 HOH A 64 406 64 HOH HOH . E 4 HOH A 65 407 65 HOH HOH . E 4 HOH A 66 408 66 HOH HOH . E 4 HOH A 67 409 67 HOH HOH . E 4 HOH A 68 410 68 HOH HOH . E 4 HOH A 69 411 69 HOH HOH . E 4 HOH A 70 412 70 HOH HOH . E 4 HOH A 71 413 71 HOH HOH . E 4 HOH A 72 414 72 HOH HOH . E 4 HOH A 73 415 73 HOH HOH . E 4 HOH A 74 416 74 HOH HOH . E 4 HOH A 75 417 75 HOH HOH . E 4 HOH A 76 418 76 HOH HOH . E 4 HOH A 77 419 77 HOH HOH . E 4 HOH A 78 420 78 HOH HOH . E 4 HOH A 79 421 79 HOH HOH . E 4 HOH A 80 422 80 HOH HOH . E 4 HOH A 81 423 81 HOH HOH . E 4 HOH A 82 424 82 HOH HOH . E 4 HOH A 83 425 83 HOH HOH . E 4 HOH A 84 426 84 HOH HOH . E 4 HOH A 85 427 85 HOH HOH . E 4 HOH A 86 428 86 HOH HOH . E 4 HOH A 87 429 87 HOH HOH . E 4 HOH A 88 430 88 HOH HOH . E 4 HOH A 89 431 89 HOH HOH . E 4 HOH A 90 432 90 HOH HOH . E 4 HOH A 91 433 91 HOH HOH . E 4 HOH A 92 434 92 HOH HOH . E 4 HOH A 93 435 93 HOH HOH . E 4 HOH A 94 436 94 HOH HOH . E 4 HOH A 95 437 95 HOH HOH . E 4 HOH A 96 438 96 HOH HOH . E 4 HOH A 97 439 97 HOH HOH . E 4 HOH A 98 440 98 HOH HOH . E 4 HOH A 99 441 99 HOH HOH . E 4 HOH A 100 442 100 HOH HOH . E 4 HOH A 101 443 101 HOH HOH . E 4 HOH A 102 444 102 HOH HOH . E 4 HOH A 103 445 103 HOH HOH . E 4 HOH A 104 446 104 HOH HOH . E 4 HOH A 105 447 105 HOH HOH . E 4 HOH A 106 448 106 HOH HOH . E 4 HOH A 107 449 107 HOH HOH . E 4 HOH A 108 450 108 HOH HOH . E 4 HOH A 109 451 109 HOH HOH . E 4 HOH A 110 452 110 HOH HOH . E 4 HOH A 111 453 111 HOH HOH . E 4 HOH A 112 454 112 HOH HOH . E 4 HOH A 113 455 113 HOH HOH . E 4 HOH A 114 456 114 HOH HOH . E 4 HOH A 115 457 115 HOH HOH . E 4 HOH A 116 458 116 HOH HOH . E 4 HOH A 117 459 117 HOH HOH . E 4 HOH A 118 460 118 HOH HOH . E 4 HOH A 119 461 119 HOH HOH . E 4 HOH A 120 462 120 HOH HOH . E 4 HOH A 121 463 121 HOH HOH . E 4 HOH A 122 464 122 HOH HOH . E 4 HOH A 123 465 123 HOH HOH . E 4 HOH A 124 466 124 HOH HOH . E 4 HOH A 125 467 125 HOH HOH . E 4 HOH A 126 468 126 HOH HOH . E 4 HOH A 127 469 127 HOH HOH . E 4 HOH A 128 470 128 HOH HOH . E 4 HOH A 129 471 129 HOH HOH . E 4 HOH A 130 472 130 HOH HOH . E 4 HOH A 131 473 131 HOH HOH . E 4 HOH A 132 474 132 HOH HOH . E 4 HOH A 133 475 133 HOH HOH . E 4 HOH A 134 476 134 HOH HOH . E 4 HOH A 135 477 135 HOH HOH . E 4 HOH A 136 478 136 HOH HOH . E 4 HOH A 137 479 137 HOH HOH . E 4 HOH A 138 480 138 HOH HOH . E 4 HOH A 139 481 139 HOH HOH . E 4 HOH A 140 482 140 HOH HOH . E 4 HOH A 141 483 141 HOH HOH . E 4 HOH A 142 484 142 HOH HOH . E 4 HOH A 143 485 143 HOH HOH . E 4 HOH A 144 486 144 HOH HOH . E 4 HOH A 145 487 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA OLN . . . B 2 109.193 42.313 82.273 1 38.44 ? CA OLN 345 A 1 HETATM 2 C C OLN . . . B 2 109.297 43.093 80.965 1 37 ? C OLN 345 A 1 HETATM 3 O O OLN . . . B 2 108.271 43.683 80.578 1 36.08 ? O OLN 345 A 1 HETATM 4 O OXT OLN . . . B 2 110.392 43.123 80.358 1 35.36 ? OXT OLN 345 A 1 HETATM 5 C CB OLN . . . B 2 108.479 43.196 83.302 1 39.24 ? CB OLN 345 A 1 HETATM 6 C CG OLN . . . B 2 108.327 42.593 84.674 1 40 ? CG OLN 345 A 1 HETATM 7 C CD OLN . . . B 2 107.201 43.284 85.421 1 36.56 ? CD OLN 345 A 1 HETATM 8 N NE OLN . . . B 2 107.547 44.606 85.94 1 32.21 ? NE OLN 345 A 1 HETATM 9 C CZ OLN . . . B 2 106.678 45.394 86.568 1 33.66 ? CZ OLN 345 A 1 HETATM 10 O O2 OLN . . . B 2 105.467 45.134 86.617 1 28.57 ? O2 OLN 345 A 1 HETATM 11 N NH2 OLN . . . B 2 107.201 46.473 87.148 1 29.68 ? NH2 OLN 345 A 1 HETATM 12 N N1 OLN . . . B 2 110.52 41.896 82.737 1 38.24 ? N1 OLN 345 A 1 HETATM 13 C C1 OLN . . . B 2 111.183 40.803 82.364 1 39.19 ? C1 OLN 345 A 1 HETATM 14 O O1 OLN . . . B 2 110.677 39.947 81.641 1 41.03 ? O1 OLN 345 A 1 HETATM 15 C C2 OLN . . . B 2 112.602 40.719 82.91 1 39.02 ? C2 OLN 345 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 634 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #