data_3KZO # _model_server_result.job_id BZgccsn7srtqqIHeNqa0iA _model_server_result.datetime_utc '2024-12-13 02:58:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kzo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":347}' # _entry.id 3KZO # _exptl.entry_id 3KZO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KZO _cell.length_a 129.953 _cell.length_b 129.953 _cell.length_c 129.953 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KZO _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_665 -z+3/2,-x+1,y+1/2 0 0 -1 -1 0 0 0 1 0 194.9295 129.953 64.9765 3 'crystal symmetry operation' 10_646 -y+1,z-1/2,-x+3/2 0 -1 0 0 0 1 -1 0 0 129.953 -64.9765 194.9295 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id KCX _struct_conn.ptnr1_label_seq_id 322 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id KCX _struct_conn.ptnr1_auth_seq_id 302 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id ALA _struct_conn.ptnr2_label_seq_id 323 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ALA _struct_conn.ptnr2_auth_seq_id 303 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.327 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 163 n n C1 C2 GOL sing 164 n n C1 H11 GOL sing 165 n n C1 H12 GOL sing 166 n n O1 HO1 GOL sing 167 n n C2 O2 GOL sing 168 n n C2 C3 GOL sing 169 n n C2 H2 GOL sing 170 n n O2 HO2 GOL sing 171 n n C3 O3 GOL sing 172 n n C3 H31 GOL sing 173 n n C3 H32 GOL sing 174 n n O3 HO3 GOL sing 175 n n # _atom_sites.entry_id 3KZO _atom_sites.fract_transf_matrix[1][1] 0.007695 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007695 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AN0 A 1 345 345 AN0 AN0 . C 3 CP A 1 346 346 CP CP . D 4 GOL A 1 347 347 GOL GOL . E 5 SO4 A 1 350 350 SO4 SO4 . F 6 HOH A 1 340 1 HOH HOH . F 6 HOH A 2 341 2 HOH HOH . F 6 HOH A 3 342 3 HOH HOH . F 6 HOH A 4 343 4 HOH HOH . F 6 HOH A 5 344 5 HOH HOH . F 6 HOH A 6 348 6 HOH HOH . F 6 HOH A 7 349 7 HOH HOH . F 6 HOH A 8 351 8 HOH HOH . F 6 HOH A 9 352 9 HOH HOH . F 6 HOH A 10 353 10 HOH HOH . F 6 HOH A 11 354 11 HOH HOH . F 6 HOH A 12 355 12 HOH HOH . F 6 HOH A 13 356 13 HOH HOH . F 6 HOH A 14 357 14 HOH HOH . F 6 HOH A 15 358 15 HOH HOH . F 6 HOH A 16 359 16 HOH HOH . F 6 HOH A 17 360 17 HOH HOH . F 6 HOH A 18 361 18 HOH HOH . F 6 HOH A 19 362 19 HOH HOH . F 6 HOH A 20 363 20 HOH HOH . F 6 HOH A 21 364 21 HOH HOH . F 6 HOH A 22 365 22 HOH HOH . F 6 HOH A 23 366 23 HOH HOH . F 6 HOH A 24 367 24 HOH HOH . F 6 HOH A 25 368 25 HOH HOH . F 6 HOH A 26 369 26 HOH HOH . F 6 HOH A 27 370 27 HOH HOH . F 6 HOH A 28 371 28 HOH HOH . F 6 HOH A 29 372 29 HOH HOH . F 6 HOH A 30 373 30 HOH HOH . F 6 HOH A 31 374 31 HOH HOH . F 6 HOH A 32 375 32 HOH HOH . F 6 HOH A 33 376 33 HOH HOH . F 6 HOH A 34 377 34 HOH HOH . F 6 HOH A 35 378 35 HOH HOH . F 6 HOH A 36 379 36 HOH HOH . F 6 HOH A 37 380 37 HOH HOH . F 6 HOH A 38 381 38 HOH HOH . F 6 HOH A 39 382 39 HOH HOH . F 6 HOH A 40 383 40 HOH HOH . F 6 HOH A 41 384 41 HOH HOH . F 6 HOH A 42 385 42 HOH HOH . F 6 HOH A 43 386 43 HOH HOH . F 6 HOH A 44 387 44 HOH HOH . F 6 HOH A 45 388 45 HOH HOH . F 6 HOH A 46 389 46 HOH HOH . F 6 HOH A 47 390 47 HOH HOH . F 6 HOH A 48 391 48 HOH HOH . F 6 HOH A 49 392 49 HOH HOH . F 6 HOH A 50 393 50 HOH HOH . F 6 HOH A 51 394 51 HOH HOH . F 6 HOH A 52 395 52 HOH HOH . F 6 HOH A 53 396 53 HOH HOH . F 6 HOH A 54 397 54 HOH HOH . F 6 HOH A 55 398 55 HOH HOH . F 6 HOH A 56 399 56 HOH HOH . F 6 HOH A 57 400 57 HOH HOH . F 6 HOH A 58 401 58 HOH HOH . F 6 HOH A 59 402 59 HOH HOH . F 6 HOH A 60 403 60 HOH HOH . F 6 HOH A 61 404 61 HOH HOH . F 6 HOH A 62 405 62 HOH HOH . F 6 HOH A 63 406 63 HOH HOH . F 6 HOH A 64 407 64 HOH HOH . F 6 HOH A 65 408 65 HOH HOH . F 6 HOH A 66 409 66 HOH HOH . F 6 HOH A 67 410 67 HOH HOH . F 6 HOH A 68 411 68 HOH HOH . F 6 HOH A 69 412 69 HOH HOH . F 6 HOH A 70 413 70 HOH HOH . F 6 HOH A 71 414 71 HOH HOH . F 6 HOH A 72 415 72 HOH HOH . F 6 HOH A 73 416 73 HOH HOH . F 6 HOH A 74 417 74 HOH HOH . F 6 HOH A 75 418 75 HOH HOH . F 6 HOH A 76 419 76 HOH HOH . F 6 HOH A 77 420 77 HOH HOH . F 6 HOH A 78 421 78 HOH HOH . F 6 HOH A 79 422 79 HOH HOH . F 6 HOH A 80 423 80 HOH HOH . F 6 HOH A 81 424 81 HOH HOH . F 6 HOH A 82 425 82 HOH HOH . F 6 HOH A 83 426 83 HOH HOH . F 6 HOH A 84 427 84 HOH HOH . F 6 HOH A 85 428 85 HOH HOH . F 6 HOH A 86 429 86 HOH HOH . F 6 HOH A 87 430 87 HOH HOH . F 6 HOH A 88 431 88 HOH HOH . F 6 HOH A 89 432 89 HOH HOH . F 6 HOH A 90 433 90 HOH HOH . F 6 HOH A 91 434 91 HOH HOH . F 6 HOH A 92 435 92 HOH HOH . F 6 HOH A 93 436 93 HOH HOH . F 6 HOH A 94 437 94 HOH HOH . F 6 HOH A 95 438 95 HOH HOH . F 6 HOH A 96 439 96 HOH HOH . F 6 HOH A 97 440 97 HOH HOH . F 6 HOH A 98 441 98 HOH HOH . F 6 HOH A 99 442 99 HOH HOH . F 6 HOH A 100 443 100 HOH HOH . F 6 HOH A 101 444 101 HOH HOH . F 6 HOH A 102 445 102 HOH HOH . F 6 HOH A 103 446 103 HOH HOH . F 6 HOH A 104 447 104 HOH HOH . F 6 HOH A 105 448 105 HOH HOH . F 6 HOH A 106 449 106 HOH HOH . F 6 HOH A 107 450 107 HOH HOH . F 6 HOH A 108 451 108 HOH HOH . F 6 HOH A 109 452 109 HOH HOH . F 6 HOH A 110 453 110 HOH HOH . F 6 HOH A 111 454 111 HOH HOH . F 6 HOH A 112 455 112 HOH HOH . F 6 HOH A 113 456 113 HOH HOH . F 6 HOH A 114 457 114 HOH HOH . F 6 HOH A 115 458 115 HOH HOH . F 6 HOH A 116 459 116 HOH HOH . F 6 HOH A 117 460 117 HOH HOH . F 6 HOH A 118 461 118 HOH HOH . F 6 HOH A 119 462 119 HOH HOH . F 6 HOH A 120 463 120 HOH HOH . F 6 HOH A 121 464 121 HOH HOH . F 6 HOH A 122 465 122 HOH HOH . F 6 HOH A 123 466 123 HOH HOH . F 6 HOH A 124 467 124 HOH HOH . F 6 HOH A 125 468 125 HOH HOH . F 6 HOH A 126 469 126 HOH HOH . F 6 HOH A 127 470 127 HOH HOH . F 6 HOH A 128 471 128 HOH HOH . F 6 HOH A 129 472 129 HOH HOH . F 6 HOH A 130 473 130 HOH HOH . F 6 HOH A 131 474 131 HOH HOH . F 6 HOH A 132 475 132 HOH HOH . F 6 HOH A 133 476 133 HOH HOH . F 6 HOH A 134 477 134 HOH HOH . F 6 HOH A 135 478 135 HOH HOH . F 6 HOH A 136 479 136 HOH HOH . F 6 HOH A 137 480 137 HOH HOH . F 6 HOH A 138 481 138 HOH HOH . F 6 HOH A 139 482 139 HOH HOH . F 6 HOH A 140 483 140 HOH HOH . F 6 HOH A 141 484 141 HOH HOH . F 6 HOH A 142 485 142 HOH HOH . F 6 HOH A 143 486 143 HOH HOH . F 6 HOH A 144 487 144 HOH HOH . F 6 HOH A 145 488 145 HOH HOH . F 6 HOH A 146 489 146 HOH HOH . F 6 HOH A 147 490 147 HOH HOH . F 6 HOH A 148 491 148 HOH HOH . F 6 HOH A 149 492 149 HOH HOH . F 6 HOH A 150 493 150 HOH HOH . F 6 HOH A 151 494 151 HOH HOH . F 6 HOH A 152 495 152 HOH HOH . F 6 HOH A 153 496 153 HOH HOH . F 6 HOH A 154 497 154 HOH HOH . F 6 HOH A 155 498 155 HOH HOH . F 6 HOH A 156 499 156 HOH HOH . F 6 HOH A 157 500 157 HOH HOH . F 6 HOH A 158 501 158 HOH HOH . F 6 HOH A 159 502 159 HOH HOH . F 6 HOH A 160 503 160 HOH HOH . F 6 HOH A 161 504 161 HOH HOH . F 6 HOH A 162 505 162 HOH HOH . F 6 HOH A 163 506 163 HOH HOH . F 6 HOH A 164 507 164 HOH HOH . F 6 HOH A 165 508 165 HOH HOH . F 6 HOH A 166 509 166 HOH HOH . F 6 HOH A 167 510 167 HOH HOH . F 6 HOH A 168 511 168 HOH HOH . F 6 HOH A 169 512 169 HOH HOH . F 6 HOH A 170 513 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 92.17 64.203 76.383 1 60.54 ? C1 GOL 347 A 1 HETATM 2 O O1 GOL . . . D 4 93.209 63.812 75.507 1 61.99 ? O1 GOL 347 A 1 HETATM 3 C C2 GOL . . . D 4 91.936 65.674 76.13 1 60.38 ? C2 GOL 347 A 1 HETATM 4 O O2 GOL . . . D 4 93.165 66.316 76.417 1 61.74 ? O2 GOL 347 A 1 HETATM 5 C C3 GOL . . . D 4 90.829 66.227 77.022 1 61.17 ? C3 GOL 347 A 1 HETATM 6 O O3 GOL . . . D 4 91.131 66.086 78.402 1 60.21 ? O3 GOL 347 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #