data_3KZZ
#
_model_server_result.job_id            wrYMs-XIoyV23ZwxldAV4Q 
_model_server_result.datetime_utc      '2025-03-04 21:20:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kzz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":181}' 
#
_entry.id    3KZZ 
#
_exptl.entry_id    3KZZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              241.249 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-(benzyloxy)-9H-purin-2-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KZZ 
_cell.length_a            77.16 
_cell.length_b            77.16 
_cell.length_c            64.81 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KZZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        95 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 8 A CYS 5 1_555 B ZN ZN . A ZN 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc2 A SG CYS 27 A CYS 24 1_555 B ZN ZN . A ZN 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc3 A NE2 HIS 32 A HIS 29 1_555 B ZN ZN . A ZN 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc4 A ND1 HIS 88 A HIS 85 1_555 B ZN ZN . A ZN 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
#
_chem_comp.formula           'C12 H11 N5 O' 
_chem_comp.formula_weight    241.249 
_chem_comp.id                OBG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-(benzyloxy)-9H-purin-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     o6-benzylguanine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N1 OBG sing 237 n n 
C1 N2 OBG doub 238 n y 
C1 N5 OBG sing 239 n y 
O1 C2 OBG sing 240 n n 
O1 C3 OBG sing 241 n n 
C2 N2 OBG sing 242 n y 
C2 C10 OBG doub 243 n y 
C3 C4 OBG sing 244 n n 
N3 C10 OBG sing 245 n y 
N3 C11 OBG doub 246 n y 
C4 C5 OBG doub 247 n y 
C4 C9 OBG sing 248 n y 
N4 C11 OBG sing 249 n y 
N4 C12 OBG sing 250 n y 
C5 C6 OBG sing 251 n y 
N5 C12 OBG doub 252 n y 
C6 C7 OBG doub 253 n y 
C7 C8 OBG sing 254 n y 
C8 C9 OBG doub 255 n y 
C10 C12 OBG sing 256 n y 
N1 HN1 OBG sing 257 n n 
N1 HN1A OBG sing 258 n n 
C3 H3 OBG sing 259 n n 
C3 H3A OBG sing 260 n n 
N4 HN4 OBG sing 261 n n 
C5 H5 OBG sing 262 n n 
C6 H6 OBG sing 263 n n 
C7 H7 OBG sing 264 n n 
C8 H8 OBG sing 265 n n 
C9 H9 OBG sing 266 n n 
C11 H11 OBG sing 267 n n 
#
_atom_sites.entry_id                     3KZZ 
_atom_sites.fract_transf_matrix[1][1]    0.01296 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01296 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01543 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 180 180 ZN ZN . 
C 3 OBG A 1 181 1 OBG BG . 
D 4 HOH A 1 182 1 HOH HOH . 
D 4 HOH A 2 183 2 HOH HOH . 
D 4 HOH A 3 184 3 HOH HOH . 
D 4 HOH A 4 185 4 HOH HOH . 
D 4 HOH A 5 186 5 HOH HOH . 
D 4 HOH A 6 187 6 HOH HOH . 
D 4 HOH A 7 188 7 HOH HOH . 
D 4 HOH A 8 189 8 HOH HOH . 
D 4 HOH A 9 190 9 HOH HOH . 
D 4 HOH A 10 191 10 HOH HOH . 
D 4 HOH A 11 192 11 HOH HOH . 
D 4 HOH A 12 193 12 HOH HOH . 
D 4 HOH A 13 194 13 HOH HOH . 
D 4 HOH A 14 195 14 HOH HOH . 
D 4 HOH A 15 196 15 HOH HOH . 
D 4 HOH A 16 197 16 HOH HOH . 
D 4 HOH A 17 198 17 HOH HOH . 
D 4 HOH A 18 199 18 HOH HOH . 
D 4 HOH A 19 200 19 HOH HOH . 
D 4 HOH A 20 201 20 HOH HOH . 
D 4 HOH A 21 202 21 HOH HOH . 
D 4 HOH A 22 203 22 HOH HOH . 
D 4 HOH A 23 204 23 HOH HOH . 
D 4 HOH A 24 205 24 HOH HOH . 
D 4 HOH A 25 206 25 HOH HOH . 
D 4 HOH A 26 207 26 HOH HOH . 
D 4 HOH A 27 208 27 HOH HOH . 
D 4 HOH A 28 209 28 HOH HOH . 
D 4 HOH A 29 210 29 HOH HOH . 
D 4 HOH A 30 211 30 HOH HOH . 
D 4 HOH A 31 212 31 HOH HOH . 
D 4 HOH A 32 213 32 HOH HOH . 
D 4 HOH A 33 214 33 HOH HOH . 
D 4 HOH A 34 215 34 HOH HOH . 
D 4 HOH A 35 216 35 HOH HOH . 
D 4 HOH A 36 217 36 HOH HOH . 
D 4 HOH A 37 218 37 HOH HOH . 
D 4 HOH A 38 219 38 HOH HOH . 
D 4 HOH A 39 220 39 HOH HOH . 
D 4 HOH A 40 221 40 HOH HOH . 
D 4 HOH A 41 222 41 HOH HOH . 
D 4 HOH A 42 223 42 HOH HOH . 
D 4 HOH A 43 224 43 HOH HOH . 
D 4 HOH A 44 225 44 HOH HOH . 
D 4 HOH A 45 226 45 HOH HOH . 
D 4 HOH A 46 227 46 HOH HOH . 
D 4 HOH A 47 228 47 HOH HOH . 
D 4 HOH A 48 229 48 HOH HOH . 
D 4 HOH A 49 230 49 HOH HOH . 
D 4 HOH A 50 231 50 HOH HOH . 
D 4 HOH A 51 232 51 HOH HOH . 
D 4 HOH A 52 233 52 HOH HOH . 
D 4 HOH A 53 234 53 HOH HOH . 
D 4 HOH A 54 235 54 HOH HOH . 
D 4 HOH A 55 236 55 HOH HOH . 
D 4 HOH A 56 237 56 HOH HOH . 
D 4 HOH A 57 238 57 HOH HOH . 
D 4 HOH A 58 239 58 HOH HOH . 
D 4 HOH A 59 240 59 HOH HOH . 
D 4 HOH A 60 241 60 HOH HOH . 
D 4 HOH A 61 242 61 HOH HOH . 
D 4 HOH A 62 243 62 HOH HOH . 
D 4 HOH A 63 244 63 HOH HOH . 
D 4 HOH A 64 245 64 HOH HOH . 
D 4 HOH A 65 246 65 HOH HOH . 
D 4 HOH A 66 247 66 HOH HOH . 
D 4 HOH A 67 248 67 HOH HOH . 
D 4 HOH A 68 249 68 HOH HOH . 
D 4 HOH A 69 250 69 HOH HOH . 
D 4 HOH A 70 251 70 HOH HOH . 
D 4 HOH A 71 252 71 HOH HOH . 
D 4 HOH A 72 253 72 HOH HOH . 
D 4 HOH A 73 254 73 HOH HOH . 
D 4 HOH A 74 255 74 HOH HOH . 
D 4 HOH A 75 256 75 HOH HOH . 
D 4 HOH A 76 257 76 HOH HOH . 
D 4 HOH A 77 258 77 HOH HOH . 
D 4 HOH A 78 259 78 HOH HOH . 
D 4 HOH A 79 260 79 HOH HOH . 
D 4 HOH A 80 261 80 HOH HOH . 
D 4 HOH A 81 262 81 HOH HOH . 
D 4 HOH A 82 263 82 HOH HOH . 
D 4 HOH A 83 264 83 HOH HOH . 
D 4 HOH A 84 265 84 HOH HOH . 
D 4 HOH A 85 266 85 HOH HOH . 
D 4 HOH A 86 267 86 HOH HOH . 
D 4 HOH A 87 268 87 HOH HOH . 
D 4 HOH A 88 269 88 HOH HOH . 
D 4 HOH A 89 270 89 HOH HOH . 
D 4 HOH A 90 271 90 HOH HOH . 
D 4 HOH A 91 272 91 HOH HOH . 
D 4 HOH A 92 273 92 HOH HOH . 
D 4 HOH A 93 274 93 HOH HOH . 
D 4 HOH A 94 275 94 HOH HOH . 
D 4 HOH A 95 276 95 HOH HOH . 
D 4 HOH A 96 277 96 HOH HOH . 
D 4 HOH A 97 278 97 HOH HOH . 
D 4 HOH A 98 279 98 HOH HOH . 
D 4 HOH A 99 280 99 HOH HOH . 
D 4 HOH A 100 281 100 HOH HOH . 
D 4 HOH A 101 282 101 HOH HOH . 
D 4 HOH A 102 283 102 HOH HOH . 
D 4 HOH A 103 284 103 HOH HOH . 
D 4 HOH A 104 285 104 HOH HOH . 
D 4 HOH A 105 286 105 HOH HOH . 
D 4 HOH A 106 287 106 HOH HOH . 
D 4 HOH A 107 288 107 HOH HOH . 
D 4 HOH A 108 289 108 HOH HOH . 
D 4 HOH A 109 290 109 HOH HOH . 
D 4 HOH A 110 291 110 HOH HOH . 
D 4 HOH A 111 292 111 HOH HOH . 
D 4 HOH A 112 293 112 HOH HOH . 
D 4 HOH A 113 294 113 HOH HOH . 
D 4 HOH A 114 295 114 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OBG . . . C 3 -13.831 -27.016 3.647 1 21.91 ? C1 OBG 181 A 1 
HETATM 2 N N1 OBG . . . C 3 -12.791 -27.202 2.811 1 19.57 ? N1 OBG 181 A 1 
HETATM 3 O O1 OBG . . . C 3 -17.29 -26.113 3.104 1 26.87 ? O1 OBG 181 A 1 
HETATM 4 C C2 OBG . . . C 3 -16.132 -26.445 3.756 1 21.44 ? C2 OBG 181 A 1 
HETATM 5 N N2 OBG . . . C 3 -15.009 -26.653 3.06 1 21.5 ? N2 OBG 181 A 1 
HETATM 6 C C3 OBG . . . C 3 -17.338 -25.791 1.703 1 24.87 ? C3 OBG 181 A 1 
HETATM 7 N N3 OBG . . . C 3 -16.893 -26.513 6.283 1 24.13 ? N3 OBG 181 A 1 
HETATM 8 C C4 OBG . . . C 3 -18.768 -25.848 1.176 1 29.55 ? C4 OBG 181 A 1 
HETATM 9 N N4 OBG . . . C 3 -14.857 -27.089 7.116 1 25.25 ? N4 OBG 181 A 1 
HETATM 10 C C5 OBG . . . C 3 -19.28 -27.04 0.643 1 30.16 ? C5 OBG 181 A 1 
HETATM 11 N N5 OBG . . . C 3 -13.667 -27.183 4.994 1 20.11 ? N5 OBG 181 A 1 
HETATM 12 C C6 OBG . . . C 3 -20.587 -27.111 0.123 1 30.75 ? C6 OBG 181 A 1 
HETATM 13 C C7 OBG . . . C 3 -21.387 -25.966 0.157 1 29.23 ? C7 OBG 181 A 1 
HETATM 14 C C8 OBG . . . C 3 -20.878 -24.772 0.694 1 30.99 ? C8 OBG 181 A 1 
HETATM 15 C C9 OBG . . . C 3 -19.57 -24.699 1.188 1 29.91 ? C9 OBG 181 A 1 
HETATM 16 C C10 OBG . . . C 3 -16.057 -26.608 5.231 1 24.89 ? C10 OBG 181 A 1 
HETATM 17 C C11 OBG . . . C 3 -16.162 -26.787 7.404 1 28.27 ? C11 OBG 181 A 1 
HETATM 18 C C12 OBG . . . C 3 -14.743 -26.983 5.787 1 24.7 ? C12 OBG 181 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           18 
#