data_3L03 # _model_server_result.job_id 6HzxzV0-g3DnVk6_FkkKSg _model_server_result.datetime_utc '2024-11-27 03:42:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l03 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2}' # _entry.id 3L03 # _exptl.entry_id 3L03 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.08 _cell.angle_gamma 90 _cell.entry_id 3L03 _cell.length_a 56.027 _cell.length_b 84.203 _cell.length_c 58.762 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L03 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 232 A LYS 529 1_555 A N CME 233 A CME 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C CME 233 A CME 530 1_555 A N LYS 234 A LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 B C LYS 232 B LYS 529 1_555 B N CME 233 B CME 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale4 B C CME 233 B CME 530 1_555 B N LYS 234 B LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 199 n n C1 C2 GOL sing 200 n n C1 H11 GOL sing 201 n n C1 H12 GOL sing 202 n n O1 HO1 GOL sing 203 n n C2 O2 GOL sing 204 n n C2 C3 GOL sing 205 n n C2 H2 GOL sing 206 n n O2 HO2 GOL sing 207 n n C3 O3 GOL sing 208 n n C3 H31 GOL sing 209 n n C3 H32 GOL sing 210 n n O3 HO3 GOL sing 211 n n # _atom_sites.entry_id 3L03 _atom_sites.fract_transf_matrix[1][1] 0.017849 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006174 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CL A 1 1 1 CL CL . F 4 GOL A 1 2 2 GOL GOL . G 5 4OH A 1 551 1 4OH 4OH . H 5 4OH B 1 2 2 4OH 4OH . I 6 HOH A 1 3 3 HOH HOH . I 6 HOH A 2 4 4 HOH HOH . I 6 HOH A 3 5 5 HOH HOH . I 6 HOH A 4 6 6 HOH HOH . I 6 HOH A 5 7 7 HOH HOH . I 6 HOH A 6 8 8 HOH HOH . I 6 HOH A 7 9 9 HOH HOH . I 6 HOH A 8 10 10 HOH HOH . I 6 HOH A 9 11 11 HOH HOH . I 6 HOH A 10 18 18 HOH HOH . I 6 HOH A 11 21 21 HOH HOH . I 6 HOH A 12 26 26 HOH HOH . I 6 HOH A 13 28 28 HOH HOH . I 6 HOH A 14 30 30 HOH HOH . I 6 HOH A 15 31 31 HOH HOH . I 6 HOH A 16 39 39 HOH HOH . I 6 HOH A 17 40 40 HOH HOH . I 6 HOH A 18 41 41 HOH HOH . I 6 HOH A 19 43 43 HOH HOH . I 6 HOH A 20 46 46 HOH HOH . I 6 HOH A 21 48 48 HOH HOH . I 6 HOH A 22 49 49 HOH HOH . I 6 HOH A 23 50 50 HOH HOH . I 6 HOH A 24 51 51 HOH HOH . I 6 HOH A 25 54 54 HOH HOH . I 6 HOH A 26 55 55 HOH HOH . I 6 HOH A 27 56 56 HOH HOH . I 6 HOH A 28 58 58 HOH HOH . I 6 HOH A 29 67 67 HOH HOH . I 6 HOH A 30 69 69 HOH HOH . I 6 HOH A 31 70 70 HOH HOH . I 6 HOH A 32 72 72 HOH HOH . I 6 HOH A 33 73 73 HOH HOH . I 6 HOH A 34 74 74 HOH HOH . I 6 HOH A 35 78 78 HOH HOH . I 6 HOH A 36 83 83 HOH HOH . I 6 HOH A 37 84 84 HOH HOH . I 6 HOH A 38 88 88 HOH HOH . I 6 HOH A 39 93 93 HOH HOH . I 6 HOH A 40 94 94 HOH HOH . I 6 HOH A 41 95 95 HOH HOH . I 6 HOH A 42 97 97 HOH HOH . I 6 HOH A 43 98 98 HOH HOH . I 6 HOH A 44 100 100 HOH HOH . I 6 HOH A 45 101 101 HOH HOH . I 6 HOH A 46 102 102 HOH HOH . I 6 HOH A 47 103 103 HOH HOH . I 6 HOH A 48 104 104 HOH HOH . I 6 HOH A 49 105 105 HOH HOH . I 6 HOH A 50 106 106 HOH HOH . I 6 HOH A 51 119 119 HOH HOH . I 6 HOH A 52 120 120 HOH HOH . I 6 HOH A 53 121 121 HOH HOH . I 6 HOH A 54 552 1 HOH HOH . I 6 HOH A 55 553 2 HOH HOH . J 6 HOH B 1 12 12 HOH HOH . J 6 HOH B 2 13 13 HOH HOH . J 6 HOH B 3 14 14 HOH HOH . J 6 HOH B 4 15 15 HOH HOH . J 6 HOH B 5 16 16 HOH HOH . J 6 HOH B 6 17 17 HOH HOH . J 6 HOH B 7 19 19 HOH HOH . J 6 HOH B 8 20 20 HOH HOH . J 6 HOH B 9 22 22 HOH HOH . J 6 HOH B 10 23 23 HOH HOH . J 6 HOH B 11 24 24 HOH HOH . J 6 HOH B 12 25 25 HOH HOH . J 6 HOH B 13 27 27 HOH HOH . J 6 HOH B 14 29 29 HOH HOH . J 6 HOH B 15 32 32 HOH HOH . J 6 HOH B 16 33 33 HOH HOH . J 6 HOH B 17 34 34 HOH HOH . J 6 HOH B 18 35 35 HOH HOH . J 6 HOH B 19 36 36 HOH HOH . J 6 HOH B 20 37 37 HOH HOH . J 6 HOH B 21 38 38 HOH HOH . J 6 HOH B 22 42 42 HOH HOH . J 6 HOH B 23 44 44 HOH HOH . J 6 HOH B 24 45 45 HOH HOH . J 6 HOH B 25 47 47 HOH HOH . J 6 HOH B 26 52 52 HOH HOH . J 6 HOH B 27 53 53 HOH HOH . J 6 HOH B 28 57 57 HOH HOH . J 6 HOH B 29 59 59 HOH HOH . J 6 HOH B 30 60 60 HOH HOH . J 6 HOH B 31 61 61 HOH HOH . J 6 HOH B 32 62 62 HOH HOH . J 6 HOH B 33 63 63 HOH HOH . J 6 HOH B 34 64 64 HOH HOH . J 6 HOH B 35 65 65 HOH HOH . J 6 HOH B 36 66 66 HOH HOH . J 6 HOH B 37 68 68 HOH HOH . J 6 HOH B 38 71 71 HOH HOH . J 6 HOH B 39 75 75 HOH HOH . J 6 HOH B 40 76 76 HOH HOH . J 6 HOH B 41 77 77 HOH HOH . J 6 HOH B 42 79 79 HOH HOH . J 6 HOH B 43 80 80 HOH HOH . J 6 HOH B 44 81 81 HOH HOH . J 6 HOH B 45 82 82 HOH HOH . J 6 HOH B 46 85 85 HOH HOH . J 6 HOH B 47 86 86 HOH HOH . J 6 HOH B 48 87 87 HOH HOH . J 6 HOH B 49 89 89 HOH HOH . J 6 HOH B 50 90 90 HOH HOH . J 6 HOH B 51 91 91 HOH HOH . J 6 HOH B 52 92 92 HOH HOH . J 6 HOH B 53 96 96 HOH HOH . J 6 HOH B 54 99 99 HOH HOH . J 6 HOH B 55 107 107 HOH HOH . J 6 HOH B 56 108 108 HOH HOH . J 6 HOH B 57 109 109 HOH HOH . J 6 HOH B 58 110 110 HOH HOH . J 6 HOH B 59 111 111 HOH HOH . J 6 HOH B 60 112 112 HOH HOH . J 6 HOH B 61 113 113 HOH HOH . J 6 HOH B 62 114 114 HOH HOH . J 6 HOH B 63 115 115 HOH HOH . J 6 HOH B 64 116 116 HOH HOH . J 6 HOH B 65 117 117 HOH HOH . J 6 HOH B 66 118 118 HOH HOH . J 6 HOH B 67 122 122 HOH HOH . J 6 HOH B 68 123 123 HOH HOH . J 6 HOH B 69 124 124 HOH HOH . J 6 HOH B 70 125 125 HOH HOH . J 6 HOH B 71 126 126 HOH HOH . J 6 HOH B 72 127 127 HOH HOH . J 6 HOH B 73 128 128 HOH HOH . J 6 HOH B 74 129 129 HOH HOH . J 6 HOH B 75 130 130 HOH HOH . J 6 HOH B 76 131 131 HOH HOH . J 6 HOH B 77 132 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 1.244 8.624 5.403 1 65.98 ? C1 GOL 2 A 1 HETATM 2 O O1 GOL . . . F 4 1.011 7.447 6.166 1 64.73 ? O1 GOL 2 A 1 HETATM 3 C C2 GOL . . . F 4 0.491 9.816 5.996 1 67.73 ? C2 GOL 2 A 1 HETATM 4 O O2 GOL . . . F 4 1.15 10.329 7.132 1 67.84 ? O2 GOL 2 A 1 HETATM 5 C C3 GOL . . . F 4 0.313 10.931 4.97 1 66.08 ? C3 GOL 2 A 1 HETATM 6 O O3 GOL . . . F 4 -0.364 12.03 5.553 1 61.98 ? O3 GOL 2 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #