data_3L04 # _model_server_result.job_id lzDrxAaM4qB7GW6Ky0qUcw _model_server_result.datetime_utc '2024-11-05 10:57:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":346}' # _entry.id 3L04 # _exptl.entry_id 3L04 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 141.02 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHORIC ACID MONO(FORMAMIDE)ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L04 _cell.length_a 129.018 _cell.length_b 129.018 _cell.length_c 129.018 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_665 -z+3/2,-x+1,y+1/2 0 0 -1 -1 0 0 0 1 0 193.527 129.018 64.509 3 'crystal symmetry operation' 10_646 -y+1,z-1/2,-x+3/2 0 -1 0 0 0 1 -1 0 0 129.018 -64.509 193.527 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id KCX _struct_conn.ptnr1_label_seq_id 322 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id KCX _struct_conn.ptnr1_auth_seq_id 302 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id ALA _struct_conn.ptnr2_label_seq_id 323 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ALA _struct_conn.ptnr2_auth_seq_id 303 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.327 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C H4 N O5 P' _chem_comp.formula_weight 141.02 _chem_comp.id CP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHORIC ACID MONO(FORMAMIDE)ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C CP sing 70 n n N HN1 CP sing 71 n n N HN2 CP sing 72 n n C O CP doub 73 n n C O4P CP sing 74 n n O4P P CP sing 75 n n P O1P CP doub 76 n n P O2P CP sing 77 n n P O3P CP sing 78 n n O2P HOP2 CP sing 79 n n O3P HOP3 CP sing 80 n n # _atom_sites.entry_id 3L04 _atom_sites.fract_transf_matrix[1][1] 0.007751 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007751 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007751 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SN0 A 1 345 345 SN0 SN0 . C 3 CP A 1 346 346 CP CP . D 4 SO4 A 1 350 350 SO4 SO4 . E 5 HOH A 1 340 1 HOH TIP . E 5 HOH A 2 341 2 HOH TIP . E 5 HOH A 3 342 3 HOH TIP . E 5 HOH A 4 343 4 HOH TIP . E 5 HOH A 5 344 5 HOH TIP . E 5 HOH A 6 347 6 HOH TIP . E 5 HOH A 7 348 7 HOH TIP . E 5 HOH A 8 349 8 HOH TIP . E 5 HOH A 9 351 9 HOH TIP . E 5 HOH A 10 352 10 HOH TIP . E 5 HOH A 11 353 11 HOH TIP . E 5 HOH A 12 354 12 HOH TIP . E 5 HOH A 13 355 13 HOH TIP . E 5 HOH A 14 356 14 HOH TIP . E 5 HOH A 15 357 15 HOH TIP . E 5 HOH A 16 358 16 HOH TIP . E 5 HOH A 17 359 17 HOH TIP . E 5 HOH A 18 360 18 HOH TIP . E 5 HOH A 19 361 19 HOH TIP . E 5 HOH A 20 362 20 HOH TIP . E 5 HOH A 21 363 21 HOH TIP . E 5 HOH A 22 364 22 HOH TIP . E 5 HOH A 23 365 23 HOH TIP . E 5 HOH A 24 366 24 HOH TIP . E 5 HOH A 25 367 25 HOH TIP . E 5 HOH A 26 368 26 HOH TIP . E 5 HOH A 27 369 27 HOH TIP . E 5 HOH A 28 370 28 HOH TIP . E 5 HOH A 29 371 29 HOH TIP . E 5 HOH A 30 372 30 HOH TIP . E 5 HOH A 31 373 31 HOH TIP . E 5 HOH A 32 374 32 HOH TIP . E 5 HOH A 33 375 33 HOH TIP . E 5 HOH A 34 376 34 HOH TIP . E 5 HOH A 35 377 35 HOH TIP . E 5 HOH A 36 378 36 HOH TIP . E 5 HOH A 37 379 37 HOH TIP . E 5 HOH A 38 380 38 HOH TIP . E 5 HOH A 39 381 39 HOH TIP . E 5 HOH A 40 382 40 HOH TIP . E 5 HOH A 41 383 41 HOH TIP . E 5 HOH A 42 384 42 HOH TIP . E 5 HOH A 43 385 43 HOH TIP . E 5 HOH A 44 386 44 HOH TIP . E 5 HOH A 45 387 45 HOH TIP . E 5 HOH A 46 388 46 HOH TIP . E 5 HOH A 47 389 47 HOH TIP . E 5 HOH A 48 390 48 HOH TIP . E 5 HOH A 49 391 49 HOH TIP . E 5 HOH A 50 392 50 HOH TIP . E 5 HOH A 51 393 51 HOH TIP . E 5 HOH A 52 394 52 HOH TIP . E 5 HOH A 53 395 53 HOH TIP . E 5 HOH A 54 396 54 HOH TIP . E 5 HOH A 55 397 55 HOH TIP . E 5 HOH A 56 398 56 HOH TIP . E 5 HOH A 57 399 57 HOH TIP . E 5 HOH A 58 400 58 HOH TIP . E 5 HOH A 59 401 59 HOH TIP . E 5 HOH A 60 402 60 HOH TIP . E 5 HOH A 61 403 61 HOH TIP . E 5 HOH A 62 404 62 HOH TIP . E 5 HOH A 63 405 63 HOH TIP . E 5 HOH A 64 406 64 HOH TIP . E 5 HOH A 65 407 65 HOH TIP . E 5 HOH A 66 408 66 HOH TIP . E 5 HOH A 67 409 67 HOH TIP . E 5 HOH A 68 410 68 HOH TIP . E 5 HOH A 69 411 69 HOH TIP . E 5 HOH A 70 412 70 HOH TIP . E 5 HOH A 71 413 71 HOH TIP . E 5 HOH A 72 414 72 HOH TIP . E 5 HOH A 73 415 73 HOH TIP . E 5 HOH A 74 416 74 HOH TIP . E 5 HOH A 75 417 75 HOH TIP . E 5 HOH A 76 418 76 HOH TIP . E 5 HOH A 77 419 77 HOH TIP . E 5 HOH A 78 420 78 HOH TIP . E 5 HOH A 79 421 79 HOH TIP . E 5 HOH A 80 422 80 HOH TIP . E 5 HOH A 81 423 81 HOH TIP . E 5 HOH A 82 424 82 HOH TIP . E 5 HOH A 83 425 83 HOH TIP . E 5 HOH A 84 426 84 HOH TIP . E 5 HOH A 85 427 85 HOH TIP . E 5 HOH A 86 428 86 HOH TIP . E 5 HOH A 87 429 87 HOH TIP . E 5 HOH A 88 430 88 HOH TIP . E 5 HOH A 89 431 89 HOH TIP . E 5 HOH A 90 432 90 HOH TIP . E 5 HOH A 91 433 91 HOH TIP . E 5 HOH A 92 434 92 HOH TIP . E 5 HOH A 93 435 93 HOH TIP . E 5 HOH A 94 436 94 HOH TIP . E 5 HOH A 95 437 95 HOH TIP . E 5 HOH A 96 438 96 HOH TIP . E 5 HOH A 97 439 97 HOH TIP . E 5 HOH A 98 440 98 HOH TIP . E 5 HOH A 99 441 99 HOH TIP . E 5 HOH A 100 442 100 HOH TIP . E 5 HOH A 101 443 101 HOH TIP . E 5 HOH A 102 444 102 HOH TIP . E 5 HOH A 103 445 103 HOH TIP . E 5 HOH A 104 446 104 HOH TIP . E 5 HOH A 105 447 105 HOH TIP . E 5 HOH A 106 448 106 HOH TIP . E 5 HOH A 107 449 107 HOH TIP . E 5 HOH A 108 450 108 HOH TIP . E 5 HOH A 109 451 109 HOH TIP . E 5 HOH A 110 452 110 HOH TIP . E 5 HOH A 111 453 111 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N CP . . . C 3 106.545 46.345 87.075 1 27.27 ? N CP 346 A 1 HETATM 2 C C CP . . . C 3 105.873 45.205 87.216 1 27.07 ? C CP 346 A 1 HETATM 3 O O CP . . . C 3 104.802 44.997 86.656 1 30.68 ? O CP 346 A 1 HETATM 4 O O4P CP . . . C 3 106.476 44.237 88.081 1 27.76 ? O4P CP 346 A 1 HETATM 5 P P CP . . . C 3 106.03 42.667 88.088 1 26.14 ? P CP 346 A 1 HETATM 6 O O1P CP . . . C 3 106.62 41.957 86.796 1 26.31 ? O1P CP 346 A 1 HETATM 7 O O2P CP . . . C 3 104.436 42.546 88.098 1 23.45 ? O2P CP 346 A 1 HETATM 8 O O3P CP . . . C 3 106.683 42.001 89.408 1 25.49 ? O3P CP 346 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #