data_3L05 # _model_server_result.job_id KDgvbcgizOLXDnafzo2v1w _model_server_result.datetime_utc '2024-10-20 01:29:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l05 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":345}' # _entry.id 3L05 # _exptl.entry_id 3L05 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 217.219 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3-CARBOXYPROPANOYL)-L-NORVALINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L05 _cell.length_a 128.974 _cell.length_b 128.974 _cell.length_c 128.974 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L05 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_665 -z+3/2,-x+1,y+1/2 0 0 -1 -1 0 0 0 1 0 193.461 128.974 64.487 3 'crystal symmetry operation' 10_646 -y+1,z-1/2,-x+3/2 0 -1 0 0 0 1 -1 0 0 128.974 -64.487 193.461 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 321 A VAL 301 1_555 A N KCX 322 A KCX 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C KCX 322 A KCX 302 1_555 A N ALA 323 A ALA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C9 H15 N O5' _chem_comp.formula_weight 217.219 _chem_comp.id SN0 _chem_comp.mon_nstd_flag . _chem_comp.name N-(3-CARBOXYPROPANOYL)-L-NORVALINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA C SN0 sing 327 n n CA CB SN0 sing 328 n n CA N1 SN0 sing 329 n n CA HA SN0 sing 330 n n C O SN0 sing 331 n n C OXT SN0 doub 332 n n O HO SN0 sing 333 n n CB CG SN0 sing 334 n n CB HB1 SN0 sing 335 n n CB HB2 SN0 sing 336 n n CG CD SN0 sing 337 n n CG HG1 SN0 sing 338 n n CG HG2 SN0 sing 339 n n CD HD1A SN0 sing 340 n n CD HD2 SN0 sing 341 n n CD HD3 SN0 sing 342 n n N1 C1 SN0 sing 343 n n N1 HN1 SN0 sing 344 n n C1 O1 SN0 doub 345 n n C1 C2 SN0 sing 346 n n C2 C3 SN0 sing 347 n n C2 H21 SN0 sing 348 n n C2 H22 SN0 sing 349 n n C3 C4 SN0 sing 350 n n C3 H31 SN0 sing 351 n n C3 H32 SN0 sing 352 n n C4 OD1 SN0 sing 353 n n C4 OD2 SN0 doub 354 n n OD1 HD1 SN0 sing 355 n n # _atom_sites.entry_id 3L05 _atom_sites.fract_transf_matrix[1][1] 0.007754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007754 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SN0 A 1 345 345 SN0 SN0 . C 3 CP A 1 346 346 CP CP . D 4 SO4 A 1 350 350 SO4 SO4 . E 5 HOH A 1 340 1 HOH TIP . E 5 HOH A 2 341 2 HOH TIP . E 5 HOH A 3 342 3 HOH TIP . E 5 HOH A 4 343 4 HOH TIP . E 5 HOH A 5 344 5 HOH TIP . E 5 HOH A 6 347 6 HOH TIP . E 5 HOH A 7 348 7 HOH TIP . E 5 HOH A 8 349 8 HOH TIP . E 5 HOH A 9 351 9 HOH TIP . E 5 HOH A 10 352 10 HOH TIP . E 5 HOH A 11 353 11 HOH TIP . E 5 HOH A 12 354 12 HOH TIP . E 5 HOH A 13 355 13 HOH TIP . E 5 HOH A 14 356 14 HOH TIP . E 5 HOH A 15 357 15 HOH TIP . E 5 HOH A 16 358 16 HOH TIP . E 5 HOH A 17 359 17 HOH TIP . E 5 HOH A 18 360 18 HOH TIP . E 5 HOH A 19 361 19 HOH TIP . E 5 HOH A 20 362 20 HOH TIP . E 5 HOH A 21 363 21 HOH TIP . E 5 HOH A 22 364 22 HOH TIP . E 5 HOH A 23 365 23 HOH TIP . E 5 HOH A 24 366 24 HOH TIP . E 5 HOH A 25 367 25 HOH TIP . E 5 HOH A 26 368 26 HOH TIP . E 5 HOH A 27 369 27 HOH TIP . E 5 HOH A 28 370 28 HOH TIP . E 5 HOH A 29 371 29 HOH TIP . E 5 HOH A 30 372 30 HOH TIP . E 5 HOH A 31 373 31 HOH TIP . E 5 HOH A 32 374 32 HOH TIP . E 5 HOH A 33 375 33 HOH TIP . E 5 HOH A 34 376 34 HOH TIP . E 5 HOH A 35 377 35 HOH TIP . E 5 HOH A 36 378 36 HOH TIP . E 5 HOH A 37 379 37 HOH TIP . E 5 HOH A 38 380 38 HOH TIP . E 5 HOH A 39 381 39 HOH TIP . E 5 HOH A 40 382 40 HOH TIP . E 5 HOH A 41 383 41 HOH TIP . E 5 HOH A 42 384 42 HOH TIP . E 5 HOH A 43 385 43 HOH TIP . E 5 HOH A 44 386 44 HOH TIP . E 5 HOH A 45 387 45 HOH TIP . E 5 HOH A 46 388 46 HOH TIP . E 5 HOH A 47 389 47 HOH TIP . E 5 HOH A 48 390 48 HOH TIP . E 5 HOH A 49 391 49 HOH TIP . E 5 HOH A 50 392 50 HOH TIP . E 5 HOH A 51 393 51 HOH TIP . E 5 HOH A 52 394 52 HOH TIP . E 5 HOH A 53 395 53 HOH TIP . E 5 HOH A 54 396 54 HOH TIP . E 5 HOH A 55 397 55 HOH TIP . E 5 HOH A 56 398 56 HOH TIP . E 5 HOH A 57 399 57 HOH TIP . E 5 HOH A 58 400 58 HOH TIP . E 5 HOH A 59 401 59 HOH TIP . E 5 HOH A 60 402 60 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA SN0 . . . B 2 108.69 41.761 81.789 1 43.22 ? CA SN0 345 A 1 HETATM 2 C C SN0 . . . B 2 108.718 42.599 80.506 1 43.56 ? C SN0 345 A 1 HETATM 3 O O SN0 . . . B 2 107.662 43.147 80.115 1 43.23 ? O SN0 345 A 1 HETATM 4 O OXT SN0 . . . B 2 109.806 42.694 79.903 1 43.6 ? OXT SN0 345 A 1 HETATM 5 C CB SN0 . . . B 2 107.931 42.486 82.904 1 44.19 ? CB SN0 345 A 1 HETATM 6 C CG SN0 . . . B 2 108.479 43.86 83.251 1 44.54 ? CG SN0 345 A 1 HETATM 7 C CD SN0 . . . B 2 107.507 44.621 84.135 1 44.16 ? CD SN0 345 A 1 HETATM 8 N N1 SN0 . . . B 2 110.054 41.434 82.212 1 42.34 ? N1 SN0 345 A 1 HETATM 9 C C1 SN0 . . . B 2 110.621 40.27 81.908 1 41.81 ? C1 SN0 345 A 1 HETATM 10 O O1 SN0 . . . B 2 109.972 39.336 81.427 1 43.13 ? O1 SN0 345 A 1 HETATM 11 C C2 SN0 . . . B 2 112.119 40.207 82.212 1 39.07 ? C2 SN0 345 A 1 HETATM 12 C C3 SN0 . . . B 2 112.341 39.081 83.222 1 38.37 ? C3 SN0 345 A 1 HETATM 13 C C4 SN0 . . . B 2 113.774 38.761 83.527 1 37.87 ? C4 SN0 345 A 1 HETATM 14 O OD1 SN0 . . . B 2 114.702 39.505 83.156 1 39.06 ? OD1 SN0 345 A 1 HETATM 15 O OD2 SN0 . . . B 2 113.983 37.718 84.169 1 37.74 ? OD2 SN0 345 A 1 # _model_server_stats.io_time_ms 214 _model_server_stats.parse_time_ms 96 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #