data_3L09 # _model_server_result.job_id eVptlLTX4lm8d4PG-EiD2Q _model_server_result.datetime_utc '2024-11-05 00:31:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3l09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":270}' # _entry.id 3L09 # _exptl.entry_id 3L09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3L09 _cell.length_a 69.953 _cell.length_b 81.722 _cell.length_c 199.921 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,O,P 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 2 1 C,D,G,H,I,J,K,L,M,N,Q,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 54 A ARG 53 1_555 A N MSE 55 A MSE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 55 A MSE 54 1_555 A N GLY 56 A GLY 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C ALA 61 A ALA 60 1_555 A N MSE 62 A MSE 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale4 A C MSE 62 A MSE 61 1_555 A N ARG 63 A ARG 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 A C GLY 117 A GLY 116 1_555 A N MSE 118 A MSE 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale6 A C MSE 118 A MSE 117 1_555 A N PRO 119 A PRO 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale7 B C ARG 54 B ARG 53 1_555 B N MSE 55 B MSE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 B C MSE 55 B MSE 54 1_555 B N GLY 56 B GLY 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 B C ALA 61 B ALA 60 1_555 B N MSE 62 B MSE 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale10 B C MSE 62 B MSE 61 1_555 B N ARG 63 B ARG 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale11 B C GLY 117 B GLY 116 1_555 B N MSE 118 B MSE 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 B C MSE 118 B MSE 117 1_555 B N PRO 119 B PRO 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale13 C C ARG 54 C ARG 53 1_555 C N MSE 55 C MSE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 C C MSE 55 C MSE 54 1_555 C N GLY 56 C GLY 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 C C ALA 61 C ALA 60 1_555 C N MSE 62 C MSE 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale16 C C MSE 62 C MSE 61 1_555 C N ARG 63 C ARG 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale17 C C GLY 117 C GLY 116 1_555 C N MSE 118 C MSE 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale18 C C MSE 118 C MSE 117 1_555 C N PRO 119 C PRO 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale19 D C ARG 54 D ARG 53 1_555 D N MSE 55 D MSE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale20 D C MSE 55 D MSE 54 1_555 D N GLY 56 D GLY 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale21 D C ALA 61 D ALA 60 1_555 D N MSE 62 D MSE 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale22 D C MSE 62 D MSE 61 1_555 D N ARG 63 D ARG 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale23 D C GLY 117 D GLY 116 1_555 D N MSE 118 D MSE 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale24 D C MSE 118 D MSE 117 1_555 D N PRO 119 D PRO 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3L09 _atom_sites.fract_transf_matrix[1][1] 0.014295 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 266 3 SO4 SO4 . F 2 SO4 B 1 266 7 SO4 SO4 . G 2 SO4 C 1 266 4 SO4 SO4 . H 2 SO4 C 1 267 5 SO4 SO4 . I 2 SO4 C 1 268 6 SO4 SO4 . J 2 SO4 C 1 269 8 SO4 SO4 . K 2 SO4 C 1 270 9 SO4 SO4 . L 2 SO4 D 1 266 1 SO4 SO4 . M 2 SO4 D 1 267 2 SO4 SO4 . N 2 SO4 D 1 268 10 SO4 SO4 . O 3 HOH A 1 267 22 HOH HOH . O 3 HOH A 2 268 23 HOH HOH . O 3 HOH A 3 269 24 HOH HOH . O 3 HOH A 4 270 25 HOH HOH . O 3 HOH A 5 271 26 HOH HOH . O 3 HOH A 6 272 27 HOH HOH . O 3 HOH A 7 273 28 HOH HOH . O 3 HOH A 8 274 40 HOH HOH . O 3 HOH A 9 275 42 HOH HOH . P 3 HOH B 1 267 14 HOH HOH . P 3 HOH B 2 268 29 HOH HOH . P 3 HOH B 3 269 30 HOH HOH . P 3 HOH B 4 270 43 HOH HOH . P 3 HOH B 5 271 44 HOH HOH . Q 3 HOH C 1 271 13 HOH HOH . Q 3 HOH C 2 272 17 HOH HOH . Q 3 HOH C 3 273 18 HOH HOH . Q 3 HOH C 4 274 19 HOH HOH . Q 3 HOH C 5 275 21 HOH HOH . Q 3 HOH C 6 276 32 HOH HOH . Q 3 HOH C 7 277 33 HOH HOH . R 3 HOH D 1 269 11 HOH HOH . R 3 HOH D 2 270 12 HOH HOH . R 3 HOH D 3 271 15 HOH HOH . R 3 HOH D 4 272 16 HOH HOH . R 3 HOH D 5 273 20 HOH HOH . R 3 HOH D 6 274 31 HOH HOH . R 3 HOH D 7 275 34 HOH HOH . R 3 HOH D 8 276 35 HOH HOH . R 3 HOH D 9 277 36 HOH HOH . R 3 HOH D 10 278 37 HOH HOH . R 3 HOH D 11 279 38 HOH HOH . R 3 HOH D 12 280 39 HOH HOH . R 3 HOH D 13 281 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . K 2 -0.024 20.608 45.271 0.5 71.18 ? S SO4 270 C 1 HETATM 2 O O1 SO4 . . . K 2 1.324 21.156 45.018 0.5 75.57 ? O1 SO4 270 C 1 HETATM 3 O O2 SO4 . . . K 2 -1.03 21.572 44.813 0.5 76.12 ? O2 SO4 270 C 1 HETATM 4 O O3 SO4 . . . K 2 -0.162 19.357 44.537 0.5 76.11 ? O3 SO4 270 C 1 HETATM 5 O O4 SO4 . . . K 2 -0.227 20.378 46.717 0.5 76.46 ? O4 SO4 270 C 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 5 #