data_3L0D
#
_model_server_result.job_id            tllZWucGtU_M42oWy_QKEQ 
_model_server_result.datetime_utc      '2025-09-03 19:00:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3l0d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":336}' 
#
_entry.id    3L0D 
#
_exptl.entry_id    3L0D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3L0D 
_cell.length_a            91.776 
_cell.length_b            91.776 
_cell.length_c            161.402 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3L0D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2 
A,C,E 3 1 
B,D,F 3 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -53.800667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     3L0D 
_atom_sites.fract_transf_matrix[1][1]    0.010896 
_atom_sites.fract_transf_matrix[1][2]    0.006291 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012582 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006196 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 336 336 NAD NAD . 
D 2 NAD B 1 336 336 NAD NAD . 
E 3 HOH A 1 337 1 HOH HOH . 
E 3 HOH A 2 338 3 HOH HOH . 
E 3 HOH A 3 339 5 HOH HOH . 
E 3 HOH A 4 340 8 HOH HOH . 
E 3 HOH A 5 341 9 HOH HOH . 
E 3 HOH A 6 342 10 HOH HOH . 
E 3 HOH A 7 343 11 HOH HOH . 
E 3 HOH A 8 344 13 HOH HOH . 
E 3 HOH A 9 345 14 HOH HOH . 
E 3 HOH A 10 346 15 HOH HOH . 
E 3 HOH A 11 347 17 HOH HOH . 
E 3 HOH A 12 348 18 HOH HOH . 
E 3 HOH A 13 349 20 HOH HOH . 
E 3 HOH A 14 350 21 HOH HOH . 
E 3 HOH A 15 351 22 HOH HOH . 
E 3 HOH A 16 352 24 HOH HOH . 
E 3 HOH A 17 353 25 HOH HOH . 
E 3 HOH A 18 354 26 HOH HOH . 
E 3 HOH A 19 355 28 HOH HOH . 
E 3 HOH A 20 356 29 HOH HOH . 
E 3 HOH A 21 357 30 HOH HOH . 
E 3 HOH A 22 358 31 HOH HOH . 
E 3 HOH A 23 359 33 HOH HOH . 
E 3 HOH A 24 360 34 HOH HOH . 
E 3 HOH A 25 361 35 HOH HOH . 
E 3 HOH A 26 362 36 HOH HOH . 
E 3 HOH A 27 363 37 HOH HOH . 
E 3 HOH A 28 364 39 HOH HOH . 
E 3 HOH A 29 365 40 HOH HOH . 
E 3 HOH A 30 366 41 HOH HOH . 
E 3 HOH A 31 367 42 HOH HOH . 
E 3 HOH A 32 368 43 HOH HOH . 
E 3 HOH A 33 369 45 HOH HOH . 
E 3 HOH A 34 370 46 HOH HOH . 
E 3 HOH A 35 371 47 HOH HOH . 
E 3 HOH A 36 372 48 HOH HOH . 
E 3 HOH A 37 373 49 HOH HOH . 
E 3 HOH A 38 374 50 HOH HOH . 
E 3 HOH A 39 375 51 HOH HOH . 
E 3 HOH A 40 376 52 HOH HOH . 
E 3 HOH A 41 377 53 HOH HOH . 
E 3 HOH A 42 378 54 HOH HOH . 
E 3 HOH A 43 379 55 HOH HOH . 
E 3 HOH A 44 380 56 HOH HOH . 
E 3 HOH A 45 381 57 HOH HOH . 
E 3 HOH A 46 382 58 HOH HOH . 
E 3 HOH A 47 383 59 HOH HOH . 
E 3 HOH A 48 384 60 HOH HOH . 
E 3 HOH A 49 385 61 HOH HOH . 
E 3 HOH A 50 386 62 HOH HOH . 
E 3 HOH A 51 387 64 HOH HOH . 
E 3 HOH A 52 388 65 HOH HOH . 
E 3 HOH A 53 389 66 HOH HOH . 
E 3 HOH A 54 390 67 HOH HOH . 
E 3 HOH A 55 391 68 HOH HOH . 
E 3 HOH A 56 392 69 HOH HOH . 
E 3 HOH A 57 393 70 HOH HOH . 
E 3 HOH A 58 394 71 HOH HOH . 
E 3 HOH A 59 395 72 HOH HOH . 
E 3 HOH A 60 396 73 HOH HOH . 
E 3 HOH A 61 397 74 HOH HOH . 
E 3 HOH A 62 398 75 HOH HOH . 
E 3 HOH A 63 399 76 HOH HOH . 
E 3 HOH A 64 400 77 HOH HOH . 
E 3 HOH A 65 401 78 HOH HOH . 
E 3 HOH A 66 402 79 HOH HOH . 
E 3 HOH A 67 403 80 HOH HOH . 
E 3 HOH A 68 404 82 HOH HOH . 
E 3 HOH A 69 405 88 HOH HOH . 
E 3 HOH A 70 406 89 HOH HOH . 
E 3 HOH A 71 407 90 HOH HOH . 
E 3 HOH A 72 408 91 HOH HOH . 
E 3 HOH A 73 409 92 HOH HOH . 
E 3 HOH A 74 410 93 HOH HOH . 
E 3 HOH A 75 411 94 HOH HOH . 
E 3 HOH A 76 412 95 HOH HOH . 
E 3 HOH A 77 413 96 HOH HOH . 
E 3 HOH A 78 414 97 HOH HOH . 
F 3 HOH B 1 337 2 HOH HOH . 
F 3 HOH B 2 338 4 HOH HOH . 
F 3 HOH B 3 339 6 HOH HOH . 
F 3 HOH B 4 340 7 HOH HOH . 
F 3 HOH B 5 341 12 HOH HOH . 
F 3 HOH B 6 342 16 HOH HOH . 
F 3 HOH B 7 343 19 HOH HOH . 
F 3 HOH B 8 344 23 HOH HOH . 
F 3 HOH B 9 345 27 HOH HOH . 
F 3 HOH B 10 346 32 HOH HOH . 
F 3 HOH B 11 347 38 HOH HOH . 
F 3 HOH B 12 348 44 HOH HOH . 
F 3 HOH B 13 349 63 HOH HOH . 
F 3 HOH B 14 350 81 HOH HOH . 
F 3 HOH B 15 351 83 HOH HOH . 
F 3 HOH B 16 352 84 HOH HOH . 
F 3 HOH B 17 353 85 HOH HOH . 
F 3 HOH B 18 354 86 HOH HOH . 
F 3 HOH B 19 355 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . C 2 30.873 18.951 -26.432 1 69.94 ? PA NAD 336 A 1 
HETATM 2 O O1A NAD . . . C 2 30.403 17.681 -27.112 1 69.48 ? O1A NAD 336 A 1 
HETATM 3 O O2A NAD . . . C 2 32.173 19.552 -26.94 1 71.42 ? O2A NAD 336 A 1 
HETATM 4 O O5B NAD . . . C 2 29.749 20.112 -26.507 1 68.04 ? O5B NAD 336 A 1 
HETATM 5 C C5B NAD . . . C 2 30.086 21.471 -26.827 1 64.41 ? C5B NAD 336 A 1 
HETATM 6 C C4B NAD . . . C 2 29.195 21.921 -27.984 1 61.93 ? C4B NAD 336 A 1 
HETATM 7 O O4B NAD . . . C 2 29.083 23.343 -28.063 1 59.99 ? O4B NAD 336 A 1 
HETATM 8 C C3B NAD . . . C 2 29.707 21.429 -29.338 1 61.22 ? C3B NAD 336 A 1 
HETATM 9 O O3B NAD . . . C 2 28.578 20.849 -30.004 1 60.75 ? O3B NAD 336 A 1 
HETATM 10 C C2B NAD . . . C 2 30.212 22.665 -30.074 1 59.85 ? C2B NAD 336 A 1 
HETATM 11 O O2B NAD . . . C 2 29.975 22.624 -31.488 1 54.65 ? O2B NAD 336 A 1 
HETATM 12 C C1B NAD . . . C 2 29.437 23.795 -29.384 1 59.78 ? C1B NAD 336 A 1 
HETATM 13 N N9A NAD . . . C 2 30.149 25.108 -29.342 1 59.47 ? N9A NAD 336 A 1 
HETATM 14 C C8A NAD . . . C 2 31.45 25.359 -29.099 1 58.72 ? C8A NAD 336 A 1 
HETATM 15 N N7A NAD . . . C 2 31.631 26.704 -29.161 1 60.24 ? N7A NAD 336 A 1 
HETATM 16 C C5A NAD . . . C 2 30.437 27.298 -29.443 1 60.07 ? C5A NAD 336 A 1 
HETATM 17 C C6A NAD . . . C 2 29.978 28.614 -29.632 1 60.16 ? C6A NAD 336 A 1 
HETATM 18 N N6A NAD . . . C 2 30.801 29.674 -29.546 1 61.43 ? N6A NAD 336 A 1 
HETATM 19 N N1A NAD . . . C 2 28.674 28.865 -29.906 1 60.3 ? N1A NAD 336 A 1 
HETATM 20 C C2A NAD . . . C 2 27.8 27.851 -30.004 1 59.7 ? C2A NAD 336 A 1 
HETATM 21 N N3A NAD . . . C 2 28.206 26.579 -29.832 1 59.57 ? N3A NAD 336 A 1 
HETATM 22 C C4A NAD . . . C 2 29.511 26.273 -29.556 1 59.79 ? C4A NAD 336 A 1 
HETATM 23 O O3 NAD . . . C 2 31.042 18.748 -24.81 1 70.69 ? O3 NAD 336 A 1 
HETATM 24 P PN NAD . . . C 2 29.961 18.166 -23.721 1 69.84 ? PN NAD 336 A 1 
HETATM 25 O O1N NAD . . . C 2 30.472 16.791 -23.351 1 67.35 ? O1N NAD 336 A 1 
HETATM 26 O O2N NAD . . . C 2 28.562 18.403 -24.27 1 69.94 ? O2N NAD 336 A 1 
HETATM 27 O O5D NAD . . . C 2 30.06 19.07 -22.371 1 70.53 ? O5D NAD 336 A 1 
HETATM 28 C C5D NAD . . . C 2 29.54 20.408 -22.299 1 71.12 ? C5D NAD 336 A 1 
HETATM 29 C C4D NAD . . . C 2 29.634 20.965 -20.879 1 71.6 ? C4D NAD 336 A 1 
HETATM 30 O O4D NAD . . . C 2 28.94 20.075 -20.002 1 72.57 ? O4D NAD 336 A 1 
HETATM 31 C C3D NAD . . . C 2 31.068 21.066 -20.357 1 72.04 ? C3D NAD 336 A 1 
HETATM 32 O O3D NAD . . . C 2 31.338 22.387 -19.882 1 70.29 ? O3D NAD 336 A 1 
HETATM 33 C C2D NAD . . . C 2 31.187 20.069 -19.214 1 72.02 ? C2D NAD 336 A 1 
HETATM 34 O O2D NAD . . . C 2 31.812 20.66 -18.075 1 73.44 ? O2D NAD 336 A 1 
HETATM 35 C C1D NAD . . . C 2 29.749 19.721 -18.861 1 71.86 ? C1D NAD 336 A 1 
HETATM 36 N N1N NAD . . . C 2 29.549 18.317 -18.44 1 71.12 ? N1N NAD 336 A 1 
HETATM 37 C C2N NAD . . . C 2 29.728 17.285 -19.296 1 70.33 ? C2N NAD 336 A 1 
HETATM 38 C C3N NAD . . . C 2 29.521 15.958 -18.901 1 69.04 ? C3N NAD 336 A 1 
HETATM 39 C C7N NAD . . . C 2 29.751 14.805 -19.856 1 66.5 ? C7N NAD 336 A 1 
HETATM 40 O O7N NAD . . . C 2 30.248 13.634 -19.438 1 66 ? O7N NAD 336 A 1 
HETATM 41 N N7N NAD . . . C 2 29.492 14.949 -21.141 1 63.84 ? N7N NAD 336 A 1 
HETATM 42 C C4N NAD . . . C 2 29.127 15.727 -17.589 1 69.8 ? C4N NAD 336 A 1 
HETATM 43 C C5N NAD . . . C 2 28.947 16.802 -16.728 1 70.04 ? C5N NAD 336 A 1 
HETATM 44 C C6N NAD . . . C 2 29.161 18.094 -17.178 1 70.33 ? C6N NAD 336 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#